mRNA_H-canaliculatus_M_contigs9977.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9977.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9977.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9977.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6N1_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.920e-32
Identity = 81/169 (47.93%), Postives = 104/169 (61.54%), Query Frame = 1 
Query:  424 ASTLEQSQSLGMGESLSNGRTVLTVRPSGDLELADGNDVVWRGPGSKKRRSVVGWVWRRLRRQTPGAPPCTGCRLTVTLSGQLELRERSKLLWSSGKPSKKDRKRIKAHQAASRXXXXXXXXXXXXXGIAEAVGSRGSVGMLRLVVSGDGNLVLHWGNSTEVVWKALDR 930
            A+TLEQ +S+G+ ++L+NG T L V P+GDL LAD    VW   GSKKRRS+VGW+WR++RRQ     PCT CRLTV   G++ELRE  KLLWS G+  KK R++ K      R                +  G+ GS G  RLV++ DGN +L    S EVVWKAL+R
Sbjct:  362 AATLEQRRSIGLEDALTNGSTELRVMPNGDLVLADNGRPVWTARGSKKRRSLVGWIWRKIRRQQ-AVRPCTACRLTVAPEGRVELREEGKLLWSGGQRQKKARQQ-KRQTTQQRKRVPRAN---------DREGADGS-GAFRLVITDDGNAILEREGS-EVVWKALNR 517
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BLAST of mRNA_H-canaliculatus_M_contigs9977.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6H1_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 5.480e-23
Identity = 74/179 (41.34%), Postives = 94/179 (52.51%), Query Frame = 1 
Query:  424 ASTLEQSQSLGMGESLSNGRTVLTVRPSGDLELADGNDVVWRGPGSKKRRSVVGWVWRRLRRQTPGAPPCTGCRLTVTLSGQLELRERSKLLWSSGKPSKKD----------RKRIKAHQAASRXXXXXXXXXXXXXGIAEAVGSRGSVGMLRLVVSGDGNLVLHWGNSTEVVWKALDR 930
            A+TLEQ++S+G+ ++LSNG T L V P+GDL LAD    VW   GSKKRRS+VGW+WR++RRQ                  Q ELRE  KLLWS G+  K            RKR+ +                      +  G+ GS  M RL+V+ DGN +L    S EVVWKALDR
Sbjct:  365 AATLEQTRSIGLEDALSNGSTELRVMPNGDLVLADNGRPVWTARGSKKRRSLVGWIWRKIRRQ------------------QAELREEGKLLWSGGQRQKXXXXXXXXXXXXRKRVPSAN--------------------DREGADGS-DMFRLIVTDDGNAILEREGS-EVVWKALDR 503
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9977.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.920e-3247.93protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.480e-2341.34protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9977contigH-canaliculatus_M_contigs9977:80..3124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Model size933
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionBulb-type lectin domain
Ec32 orthologEc-05_006180.1
Cds size933
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854237.7376645-CDS-H-canaliculatus_M_contigs9977:79..1931696854237.7376645-CDS-H-canaliculatus_M_contigs9977:79..193Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9977 80..193 +
1696854237.7528956-CDS-H-canaliculatus_M_contigs9977:283..5811696854237.7528956-CDS-H-canaliculatus_M_contigs9977:283..581Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9977 284..581 +
1696854237.7672505-CDS-H-canaliculatus_M_contigs9977:1148..12761696854237.7672505-CDS-H-canaliculatus_M_contigs9977:1148..1276Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9977 1149..1276 +
1696854237.7824197-CDS-H-canaliculatus_M_contigs9977:2138..22701696854237.7824197-CDS-H-canaliculatus_M_contigs9977:2138..2270Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9977 2139..2270 +
1696854237.7987487-CDS-H-canaliculatus_M_contigs9977:2863..31241696854237.7987487-CDS-H-canaliculatus_M_contigs9977:2863..3124Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9977 2864..3124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9977.1.1prot_H-canaliculatus_M_contigs9977.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9977 80..3124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9977.1.1

>prot_H-canaliculatus_M_contigs9977.1.1 ID=prot_H-canaliculatus_M_contigs9977.1.1|Name=mRNA_H-canaliculatus_M_contigs9977.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=311bp
QKLGRQQAEEERRKRQEAARRKGREEKARQEVADAAAAREVRLAAEKKRR
EEEARALRDKQHRDQQLAQREREQQQQQQQQQQQQRAREEEKARQEQVER
QQREQKAREEQKARDEAAAQKKAKAKTKAKPRAKKKVPNLAASTLEQSQS
LGMGESLSNGRTVLTVRPSGDLELADGNDVVWRGPGSKKRRSVVGWVWRR
LRRQTPGAPPCTGCRLTVTLSGQLELRERSKLLWSSGKPSKKDRKRIKAH
QAASRRRKKLRAAEGGGGGIAEAVGSRGSVGMLRLVVSGDGNLVLHWGNS
TEVVWKALDR*
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mRNA from alignment at H-canaliculatus_M_contigs9977:80..3124+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9977.1.1 ID=mRNA_H-canaliculatus_M_contigs9977.1.1|Name=mRNA_H-canaliculatus_M_contigs9977.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3045bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9977:80..3124+ (Hapterophycus canaliculatus Oshoro7m male)
CAGAAGCTAGGGCGGCAGCAGGCGGAAGAGGAGAGGCGAAAGAGGCAGGA
GGCCGCTCGTAGGAAGGGGCGGGAGGAGAAGGCACGGCAAGAGGTCGCGG
ACGCGGCGGCGGCGGTGGCGGCGGCGGGGGAGGAAGAGAGGAAGCGGCGG
CAGCTGAGGGAAGCGGATGAGCAAAAAAAGGACTGGGAAAGGAGGGAACG
GGAGCGGGAGGTGAGGTTAGCGGCCGAGAAGAAGAGGCGAGAAGAGGAGG
CGCGGGCTTTAAGGGACAAGCAACATCGGGATCAGCAGCTGGCACAGAGA
GAGCGCGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGC
GAGGGAGGAAGAGAAGGCGAGGCAGGAACAAGTGGAGAGGCAGCAACGAG
AGCAAAAAGCGAGAGAGGAACAGAAGGCGCGGGACGAGGCGGCGGCGCAG
AAGAAGGCGAAGGCAAAGACGAAGGCAAAGCCGAGGGCAAAGAAGAAGGT
GCGTGCCCTTGGCCTCTTCAGAATTCCCCTCGTTTGTGGCTGTCCACAGT
TACGTGGGGCATCCAGGGCACAAGTCGCGGCCGCGCGCATAAGTGTCGCT
ACCTGCACATGTGCGGAGAGTCTTAAGTCAATTTGCTTTGTATCGTAGTG
TGAGGTGGAGTTTCTACGCAGTACTTGGGCGCCGAAGCGTAAAGATGAAG
CAGCTTATACACACTTGTTTCGAGGGCATCTTGTTGTATCTACATGGAAC
ATGCACGTTTGTGAGCTTCGGGTCTTACAGCAAGCTGTTGTACTTCGGAA
ATATCTGTAGAGGACTGATCGGTAGAGTTCGAGGGGAAGAAGGGCCGGCC
GTGGCATGTAGCTCGAGACGCCCGACGATGCTGCGCTTGTGGGTATCTCG
GACGCTTTTCCTGACTCCAACTTCCCTTGGCTTATCACGATCGCCGAGCA
CTTGTTAATGTCGAGCTTCTCTGTAGAGCTTGTTTCATGTCTCGTATTTC
CTCTTCTCCCACTCACCTTTCTTCGGCCTTCCCCTGGTCCAATCTTCCCC
CGCCACCAGAGCAAGAAAGCCAACCTGGCTGCGTCCACCTTGGAGCAAAG
CCAATCCCTTGGGATGGGAGAGTCGTTGTCGAACGGGCGTACCGTGCTGA
CCGTCAGGCCTAGCGGCGACCTCGAGCTTGCCGATGGCAACGACGTGGTG
AGAGAAAACACCCGGGTGGGTGATTGCCATGTCTAGATGGGGGAAATCGA
TGGTTTTGTTTCACTTCCTCGCCGTCGATGGCGCATCTAAACTGAGGCTC
GCCAATGATTCGTTGAAGAATGCACCGTCCGCACATGCGACGGCTCACTC
CAAGGGCACGTGCTACTTGGAGGAGTTCCACACCAGCGATTCGTCGGTTT
GCCGGAGATCGCGCGTTCTAGCCCAAGGGCAAAGATGAAACTCACTAGCA
TGCGGGTTATGTCGTTCGCAGCCGTGTTTCTTGTGCAGATTTCTCGGGCA
ACAACCCGCGGGGAGAGAAAATAAAAATGGCTCGCCCTTTCTTCAACCGC
TCGCGGCTTCCCCTCACAACTTGGATGCGAACAGTATGCCACCCAGGAGA
GGCTGCGCAAGCTGCACGTTTGCTCCCTTTCTTGCCGGGCGCTCTGTGCG
TGTGTCTGCTTCTGTGACCGTCGTGGGGGTGGTGTCTCCATCCTGCATCT
CCGTCTCCGCCACCAGAGCGGATTGGCAGCTAGTTGAAGCGCACGCGCGT
GCCGTCTTCGCTGCTCAACGCGCTTTTTCGCGAGCTCTGCGGCTCGCTTC
GCTGCACACCGAGACAGCAGCCTGGCGGCGAAACCTTTCACCCTCTCCCG
CCTCTGCCTTTCGTTCTAGGCCTTGTTTCTGTGTCCGCGTGTGCTCTTTC
TTTGGCCGGGTGCCGAAGAGTTGTTTTTGATTTCGAGAACCTTCCTTGTT
AGCCTCCTTCTGGACAACTCGATTGCGAGGCAGGGCCAAGCATGTGGTGT
GGCTCGCTTGCTTCCTTGCCTGATTGCCCACGTACGTGCTTCCTATCCGC
CTTCCACAGGTTTGGCGAGGTCCGGGATCGAAGAAGCGCCGCAGCGTTGT
TGGGTGGGTGTGGCGAAGATTACGGCGCCAAACGCCGGGGGCGCCACCTT
GCACCGGGTGTCGGCTAACCGTCACCCTGTCGGGGCAATTGGTGCGTTTC
ATCCTGTGCGCTCGAGCTGCACAAGGTTTTGCTTGCGACAAGTGTTTTTG
TTGTTTGCCGATCATACCAGGGAACACTCCGCCGGCACCAAGGTCCTTGG
GGTACCTTGGCGCCCCCGCTCCGCGCCGGGCTACCGTGCTAGAAGTTGGG
CAGTAGCGAAAAAAGCAAAAGCTCTTGCAAGTGGGTACACCTGCCGCGGC
CAGGCTCCCTTACGTAGAGGTGCTGCCCCACTTCAAGGCGATGTTTGCCA
AGAGGCCTTCTGCTCGTTTCGTGCCCACGATGGCAGGCAGTCGTGGTGCT
GAACACTTCCATGGTTCTGGTTTTCCTCCGATTGTCTCTTCCACTGATTT
TTCCGCGCGAATTCCTGATCCCCCGCGACCGTCGCGCACTGTTCACGGCG
TGAACAAGTGCTCCTTGTCGTGCCGCCTTTTGGATGTGCGCCGCTAGGGC
AAGAGCCGGGGATAGACTCCGACTGGATCCCGCCTGCAAATCTGTTCGCC
AGCTCGTACGGAACCGGTAACTCTCCGCTCGTTGTTATGTTTTCTTCCGT
TTCCTGCCCACGGGTGGCGAATGGCATCCTGCAGGAGCTACGCGAGAGGA
GTAAGCTTCTTTGGTCCAGCGGAAAGCCCAGCAAGAAGGACAGAAAAAGA
ATCAAGGCTCACCAAGCAGCATCGCGGCGGCGGAAGAAGCTGAGGGCGGC
GGAGGGTGGTGGTGGCGGCATTGCGGAAGCCGTCGGCAGCCGCGGCAGCG
TCGGCATGTTGAGGCTGGTGGTCTCCGGCGACGGGAACCTTGTCTTGCAC
TGGGGAAATTCCACCGAGGTGGTTTGGAAAGCTTTGGATCGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9977:80..3124+

>mRNA_H-canaliculatus_M_contigs9977.1.1 ID=mRNA_H-canaliculatus_M_contigs9977.1.1|Name=mRNA_H-canaliculatus_M_contigs9977.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=933bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9977:80..3124+ (Hapterophycus canaliculatus Oshoro7m male)
CAGAAGCTAGGGCGGCAGCAGGCGGAAGAGGAGAGGCGAAAGAGGCAGGA
GGCCGCTCGTAGGAAGGGGCGGGAGGAGAAGGCACGGCAAGAGGTCGCGG
ACGCGGCGGCGGCGCGGGAGGTGAGGTTAGCGGCCGAGAAGAAGAGGCGA
GAAGAGGAGGCGCGGGCTTTAAGGGACAAGCAACATCGGGATCAGCAGCT
GGCACAGAGAGAGCGCGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGGGCGAGGGAGGAAGAGAAGGCGAGGCAGGAACAAGTGGAGAGG
CAGCAACGAGAGCAAAAAGCGAGAGAGGAACAGAAGGCGCGGGACGAGGC
GGCGGCGCAGAAGAAGGCGAAGGCAAAGACGAAGGCAAAGCCGAGGGCAA
AGAAGAAGGTGCCCAACCTGGCTGCGTCCACCTTGGAGCAAAGCCAATCC
CTTGGGATGGGAGAGTCGTTGTCGAACGGGCGTACCGTGCTGACCGTCAG
GCCTAGCGGCGACCTCGAGCTTGCCGATGGCAACGACGTGGTTTGGCGAG
GTCCGGGATCGAAGAAGCGCCGCAGCGTTGTTGGGTGGGTGTGGCGAAGA
TTACGGCGCCAAACGCCGGGGGCGCCACCTTGCACCGGGTGTCGGCTAAC
CGTCACCCTGTCGGGGCAATTGGAGCTACGCGAGAGGAGTAAGCTTCTTT
GGTCCAGCGGAAAGCCCAGCAAGAAGGACAGAAAAAGAATCAAGGCTCAC
CAAGCAGCATCGCGGCGGCGGAAGAAGCTGAGGGCGGCGGAGGGTGGTGG
TGGCGGCATTGCGGAAGCCGTCGGCAGCCGCGGCAGCGTCGGCATGTTGA
GGCTGGTGGTCTCCGGCGACGGGAACCTTGTCTTGCACTGGGGAAATTCC
ACCGAGGTGGTTTGGAAAGCTTTGGATCGGTGA
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