mRNA_H-canaliculatus_M_contigs9965.1.2 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9965.1.2 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ5_ECTSI) HSP 1 Score: 404 bits (1037), Expect = 5.050e-136 Identity = 212/252 (84.13%), Postives = 224/252 (88.89%), Query Frame = 2
Query: 62 MLLRSIRPRALMRLGGTVPAAAPTSPAVASGNGFRRTTRSYSSTRRAEMNYLPMVLESSPRGERAYDIYSRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDRDFYMTAQEAIEFGVVDKILTKRPKEGVGSGNVE 817
MLL SI RAL L G PAAA S R R+YSSTRR EMNYLPMVLES+PRGERAYDIYSRLLRERIIC+HGPVTEQM+SLVTAQLL+LESE+P KPINMYINSPGG+VTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSP+MRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLN+IYAEHTG++V EIEKVMDRDFYMTAQEAIEFGVVDKIL KRPKEG GSG V+
Sbjct: 1 MLLTSIHARALASLAGAGPAAAKNS---------RIAFRAYSSTRRVEMNYLPMVLESTPRGERAYDIYSRLLRERIICMHGPVTEQMTSLVTAQLLFLESENPDKPINMYINSPGGVVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPEMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNDIYAEHTGREVGEIEKVMDRDFYMTAQEAIEFGVVDKILKKRPKEGEGSGTVQ 243
BLAST of mRNA_H-canaliculatus_M_contigs9965.1.2 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6X3_9STRA) HSP 1 Score: 295 bits (756), Expect = 7.010e-94 Identity = 152/211 (72.04%), Postives = 180/211 (85.31%), Query Frame = 2
Query: 158 GFRRTTRSYSSTRRAEMNYLPMVLESSP-RGERAYDIYSRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDRDFYMTAQEAIEFGVVDKILTKRP 787
G R+ RS SST +PMV+ES+P +GER +DIYSRLLRERI+ L GPV+E+M+S+VTAQLL+LESEDP+KPI+MYINSPGG+VTAGLAIYDTMQYV P+ICT+CMGQAASM SLLLTAG P MR+ILPNA+VMLHQPSGGA+GMAADIAI+AEEI++TR+ LN +Y+ HTGQ V EIEKVMDRD + AQ+AI FGVVD I KRP
Sbjct: 13 GARQLHRSISSTA-VSRALVPMVVESTPGKGERGFDIYSRLLRERIVFLQGPVSEEMASVVTAQLLFLESEDPEKPISMYINSPGGLVTAGLAIYDTMQYVGPKICTVCMGQAASMASLLLTAGEPGMRYILPNARVMLHQPSGGAHGMAADIAIVAEEILRTRSVLNNLYSHHTGQPVSEIEKVMDRDTHYDAQQAIAFGVVDAIHEKRP 222
BLAST of mRNA_H-canaliculatus_M_contigs9965.1.2 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KZ88_9STRA) HSP 1 Score: 286 bits (732), Expect = 5.260e-90 Identity = 137/195 (70.26%), Postives = 167/195 (85.64%), Query Frame = 2
Query: 215 LPMVLESSPRGERAYDIYSRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDRDFYMTAQEAIEFGVVDKILTKRPKEGV 799
+P+VLES GER++DIYSRLLRERIIC+HG VT+ M+SLVTAQLL+LESE+P +P+ MYINSPGG+VTAG+A+YDTMQY+RPE+ TICMGQAASMGS+LL G P RF LPN+++MLHQPSGGA GMAADI I A EI++TRA LN I AEHT Q +EEIE+VMDRDF+M AQ+A +FGV+D ILTKR K+ +
Sbjct: 46 VPIVLESGAMGERSFDIYSRLLRERIICVHGEVTDVMASLVTAQLLFLESENPDRPVYMYINSPGGLVTAGMAMYDTMQYIRPEVQTICMGQAASMGSVLLAGGEPGYRFALPNSRIMLHQPSGGAQGMAADIDIQAREILRTRANLNRIMAEHTKQSIEEIERVMDRDFFMDAQQAKDFGVIDHILTKRTKDEI 240
BLAST of mRNA_H-canaliculatus_M_contigs9965.1.2 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3X7K7_9STRA) HSP 1 Score: 284 bits (726), Expect = 1.150e-89 Identity = 136/190 (71.58%), Postives = 163/190 (85.79%), Query Frame = 2
Query: 215 LPMVLESSPRGERAYDIYSRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDRDFYMTAQEAIEFGVVDKILTKR 784
+P+VLE + RGERAYDIYSRLLRERIICLHGPVTE M+SLVTAQLL+LESE P +P++MYINSPGG+V+AGLAIYDTMQY++PE+ T+CMGQAASMGSLLL G+P R+ LPNAK+MLHQPSGGA GMA+DIAI AEEI+KTRA LN +Y HTGQ ++ +EK MDRD + +A EFGV+D+ILT R
Sbjct: 21 VPIVLEQTSRGERAYDIYSRLLRERIICLHGPVTEDMASLVTAQLLFLESELPDQPLSMYINSPGGLVSAGLAIYDTMQYIKPEVRTMCMGQAASMGSLLLAGGAPGHRYALPNAKIMLHQPSGGAQGMASDIAIQAEEILKTRATLNNLYVRHTGQPLDRVEKAMDRDTWFDVTQAKEFGVIDQILTNR 210
BLAST of mRNA_H-canaliculatus_M_contigs9965.1.2 vs.
Match: ATP-dependent (Clp protease proteolytic subunit (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVD6_THAPS) HSP 1 Score: 280 bits (716), Expect = 1.820e-88 Identity = 131/190 (68.95%), Postives = 165/190 (86.84%), Query Frame = 2
Query: 215 LPMVLESSPRGERAYDIYSRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDRDFYMTAQEAIEFGVVDKILTKR 784
+P+VLES GERA+DIYSRLLRERIIC+HG VT+ M+SLVTAQLL+LE+E P+KP+ MYINSPGG+VTAG+A+YDTMQY+ PE+ TICMGQAASMGSLLL GS RF LPNA++MLHQPSGGA GMA+DI I A EI++TRA LN++Y HTG+++EEIE+VMDRD +M ++A++FGV+D++LTKR
Sbjct: 2 VPVVLESGTTGERAFDIYSRLLRERIICVHGEVTDSMASLVTAQLLFLEAEAPEKPVYMYINSPGGLVTAGMAMYDTMQYIHPEVHTICMGQAASMGSLLLAGGSAGCRFALPNARIMLHQPSGGAQGMASDIDIQAREILRTRANLNQLYVHHTGRELEEIERVMDRDTFMDVRQAVDFGVIDEVLTKR 191
BLAST of mRNA_H-canaliculatus_M_contigs9965.1.2 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KWE2_HETAK) HSP 1 Score: 280 bits (715), Expect = 1.550e-87 Identity = 137/216 (63.43%), Postives = 175/216 (81.02%), Query Frame = 2
Query: 176 RSYSSTRRAEMNYLPMVLESSPRGERAYDIYSRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDRDFYMTAQEAIEFGVVDKILTKRPK---EGVGSGNV 814
R ++S+ N +PMVLESS RGERAYDIYSRLLRERII +HGP+TEQ++S+VTAQLL+LE+EDP K + MYINSPGG+VTAG+AIYDTMQ+++ ++ TICMGQAASMGSLLL G+P R LPNA++MLHQPSGGA GMA+DIAI AEEI++ R+ LN++Y HTGQ + +IE+VM+RD + AQ+A+ FGV+DK+L+KR E SG V
Sbjct: 29 RFFTSSWEPTANLVPMVLESSNRGERAYDIYSRLLRERIIYVHGPITEQLASVVTAQLLFLEAEDPDKKLYMYINSPGGVVTAGMAIYDTMQFIQSDVATICMGQAASMGSLLLAGGAPGQRSALPNARIMLHQPSGGAQGMASDIAIQAEEILRIRSSLNQLYQHHTGQALADIERVMERDTFFDAQQALNFGVIDKVLSKRDNSSDESCESGKV 244
BLAST of mRNA_H-canaliculatus_M_contigs9965.1.2 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHM6_AURAN) HSP 1 Score: 276 bits (707), Expect = 4.480e-87 Identity = 132/193 (68.39%), Postives = 168/193 (87.05%), Query Frame = 2
Query: 215 LPMVLESSPRGERAYDIYSRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDRDFYMTAQEAIEFGVVDKILTKRPKE 793
+PMV+E S RGERA+DIYSRLL+ERII L+GPV ++++S+VTAQLL+LESEDP PI+MYINSPGG+VTAGLAIYDTMQY++P + T+CMGQAASMGSLLL AG+ MR LPNA++MLHQPSGGA G A+DIAI+A+EI+KTRA+LN+IY HT + + ++EKVMDRD Y TAQEA++FGVVD+++ R K+
Sbjct: 2 VPMVIERSSRGERAFDIYSRLLKERIIILNGPVHDELASVVTAQLLFLESEDPTSPISMYINSPGGVVTAGLAIYDTMQYIQPAVATLCMGQAASMGSLLLAAGADGMRRALPNAQIMLHQPSGGAQGQASDIAIVAKEILKTRAKLNDIYVHHTKKPLADVEKVMDRDSYFTAQEAMDFGVVDEVVHPRTKD 194
BLAST of mRNA_H-canaliculatus_M_contigs9965.1.2 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUT0_9STRA) HSP 1 Score: 278 bits (710), Expect = 5.240e-87 Identity = 133/195 (68.21%), Postives = 164/195 (84.10%), Query Frame = 2
Query: 215 LPMVLESSPRGERAYDIYSRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDRDFYMTAQEAIEFGVVDKILTKRPKEGV 799
+P+VLE S RGER+YDIYSRLLRERIICLHG VTE+M+S+VTAQLL+LE+EDP +P +MYINSPGG+V+AGLAIYDTMQY+RP + T+CMGQAASMGSLLL G RF LPNAK+MLHQPSGG GMA+DIAI AEEI+KTR+ LN++Y H Q++ ++E VMDRD + +AQEA++FGV+D +L KR E V
Sbjct: 25 VPIVLEQSSRGERSYDIYSRLLRERIICLHGAVTEEMASVVTAQLLFLEAEDPDRPCSMYINSPGGLVSAGLAIYDTMQYIRPPVHTVCMGQAASMGSLLLAGGEAGKRFALPNAKIMLHQPSGGTQGMASDIAIAAEEILKTRSSLNKLYVHHCQQELAQVEAVMDRDTWFSAQEALDFGVIDDMLRKREDEPV 219
BLAST of mRNA_H-canaliculatus_M_contigs9965.1.2 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AV16_9STRA) HSP 1 Score: 280 bits (716), Expect = 1.070e-86 Identity = 139/214 (64.95%), Postives = 172/214 (80.37%), Query Frame = 2
Query: 170 TTRSYSS-TRRAEMNYLPMVLESSPRGERAYDIYSRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDRDFYMTAQEAIEFGVVDKILTKRPKEGVGSG 808
T RS SS T+ +P+V+ES GER++DI+SRLLRERIIC+HG V + M+SLVTAQLL+LE+E+P PI MYINSPGG+VTAG+A+YDTMQYV+P++ TICMGQAASMGSLLL G+P R LPNA++MLHQPSGGA GMA DI IMA+EI++TRA LN++Y HTGQ +EEIE+VMDRD++M +AIEFGV+DKIL KR G G
Sbjct: 88 THRSISSATKPVSAGLVPIVIESGAGGERSFDIFSRLLRERIICVHGQVDDHMASLVTAQLLFLEAENPTSPIYMYINSPGGVVTAGMAMYDTMQYVQPDVHTICMGQAASMGSLLLAGGAPGCRHALPNARIMLHQPSGGAQGMATDIDIMAKEILRTRANLNKLYVHHTGQSLEEIERVMDRDYFMDVNQAIEFGVIDKILDKRGDADGGEG 301
BLAST of mRNA_H-canaliculatus_M_contigs9965.1.2 vs.
Match: ATP-dependent (Clp protease proteolytic subunit n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N593_9STRA) HSP 1 Score: 278 bits (712), Expect = 1.880e-86 Identity = 132/192 (68.75%), Postives = 163/192 (84.90%), Query Frame = 2
Query: 215 LPMVLESSPRGERAYDIYSRLLRERIICLHGPVTEQMSSLVTAQLLYLESEDPQKPINMYINSPGGIVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPDMRFILPNAKVMLHQPSGGANGMAADIAIMAEEIIKTRARLNEIYAEHTGQKVEEIEKVMDRDFYMTAQEAIEFGVVDKILTKRPK 790
+P+VLESSP GER++DI+SRLLRERIIC+HG VT+ M+SLVTAQLL+LE+E P +PI MYINSPGG+VTAG+A+YDTMQYVRPE+ TICMGQAASMGSLLL G+ RF LPN+++MLHQP GGA GMAADI I A EI++TRA LN +Y HTGQ ++EIE+VMDRDF+M ++IEFGV+D +L +R K
Sbjct: 69 VPVVLESSPGGERSFDIFSRLLRERIICVHGEVTDHMASLVTAQLLFLEAEAPDRPIYMYINSPGGLVTAGMAMYDTMQYVRPEVHTICMGQAASMGSLLLAGGAKGCRFALPNSRIMLHQPRGGAQGMAADIDIQAREILRTRANLNNLYVHHTGQTLDEIERVMDRDFFMDVNQSIEFGVIDDVLDRRDK 260 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9965.1.2 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs9965.1.2 >prot_H-canaliculatus_M_contigs9965.1.2 ID=prot_H-canaliculatus_M_contigs9965.1.2|Name=mRNA_H-canaliculatus_M_contigs9965.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=253bp MLLRSIRPRALMRLGGTVPAAAPTSPAVASGNGFRRTTRSYSSTRRAEMNback to top mRNA from alignment at H-canaliculatus_M_contigs9965:345..4492- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs9965.1.2 ID=mRNA_H-canaliculatus_M_contigs9965.1.2|Name=mRNA_H-canaliculatus_M_contigs9965.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4148bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9965:345..4492- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9965:345..4492- >mRNA_H-canaliculatus_M_contigs9965.1.2 ID=mRNA_H-canaliculatus_M_contigs9965.1.2|Name=mRNA_H-canaliculatus_M_contigs9965.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=759bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9965:345..4492- (Hapterophycus canaliculatus Oshoro7m male)back to top |