mRNA_H-canaliculatus_M_contigs9962.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9962.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9962.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9962.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L840_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 2.960e-76
Identity = 125/187 (66.84%), Postives = 146/187 (78.07%), Query Frame = 1 
Query:    1 QLPGLPLEILEEVILVTFCGPRDLAQVFAVSRGLRSLRQGCVTSLLEKLFGGRPGAADALPWIRSHHGDKV-----------NGNNLHDVSLVHWLHGIRDDAATGAYRVSFGKAHTLVVTPGGRALAAGSGRYGVLGARGNMNRFLFTEVDLKWGQFPGRVPVAAVACGYHHTLILSAVGTVHSCG 528
            QL GLPLE+L+  ILV F  PRD+A + A SRGLRSLR+G V+ +L+ LF GRPGA +A+PWIRSHHG K            NG +  DVSLV WL G+RD +ATGAYR S G+ H+L+VTPGGRAL+AGSGR+GVLGA G MNRFLFTEVDL WG+FPGR+PVAAVACG  HTLIL+AVGTVHSCG
Sbjct:    6 QLSGLPLEVLQGCILVPFGTPRDVAHLLAASRGLRSLRRGYVSGVLDLLFQGRPGAGNAIPWIRSHHGGKDKXXXXXNKLKGNGGSHDDVSLVDWLCGLRDMSATGAYRASLGETHSLLVTPGGRALSAGSGRHGVLGASGRMNRFLFTEVDLGWGRFPGRIPVAAVACGQRHTLILTAVGTVHSCG 192
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BLAST of mRNA_H-canaliculatus_M_contigs9962.1.1 vs.
Match: Hect (E3 ubiquitin ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL9_ECTSI)

HSP 1 Score: 241 bits (614), Expect = 1.610e-73
Identity = 119/189 (62.96%), Postives = 145/189 (76.72%), Query Frame = 1 
Query:    1 QLPGLPLEILEEVILVTFCGPRDLAQVFAVSRGLRSLRQGCVTSLLEKLFGGRPGAADALPWIRSHHGDKV-------------NGNNLHDVSLVHWLHGIRDDAATGAYRVSFGKAHTLVVTPGGRALAAGSGRYGVLGARGNMNRFLFTEVDLKWGQFPGRVPVAAVACGYHHTLILSAVGTVHSCG 528
            +L GLPLE+L+  ILV F  PRD+A + A SRGLRSLR+G V+ +L+ LF G+PGA +A+PWIRSHHG K              NG ++ DVS+V WL G+RD +ATGAY  S G+ H+L+VTPGGRAL+AGSGR+GVLG+ G MNRFLFTEVDL WG+FPGR+PV AVACG  HTLIL+AVGTVHSCG
Sbjct:    4 ELSGLPLEVLQGCILVPFGTPRDVAHLLAASRGLRSLRRGYVSGVLDLLFQGKPGAGNAIPWIRSHHGGKDXXXXXXXXNKLKGNGGSVDDVSVVDWLCGLRDTSATGAYSASLGETHSLLVTPGGRALSAGSGRHGVLGSSGRMNRFLFTEVDLGWGRFPGRIPVVAVACGQRHTLILTAVGTVHSCG 192
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BLAST of mRNA_H-canaliculatus_M_contigs9962.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IID6_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 1.550e-6
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:  295 VSFGKAHTLVVTPGGRALAAGSGRYGVLGARGN--MNRFLFTEVDLKWGQFPGRVPVAAVACGYHHTLILSAVGTVHSCG 528
            V  G+AH++ +T  G+ LA GS  +G LG  GN  +   LFT +  KW +   +  + ++ACG +HTL+L+ +G V+SCG
Sbjct:    8 VECGQAHSIAITKTGKILACGSNEHGQLGL-GNEVLYHTLFTTI--KWHE---KTHIISIACGNNHTLLLTGLGHVYSCG 81
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BLAST of mRNA_H-canaliculatus_M_contigs9962.1.1 vs.
Match: Similar (to UVB-resistance protein UVR8 n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V7F3_CYAM1)

HSP 1 Score: 54.7 bits (130), Expect = 1.470e-5
Identity = 32/91 (35.16%), Postives = 47/91 (51.65%), Query Frame = 1 
Query:  295 VSFGKAHTLVVTPGGRALAAGSGRYGVLGARGNMNRFLFTEVDLKWGQFPGR---------VP----VAAVACGYHHTLILSAVGTVHSCG 528
            V+ G+ HT  V+  GR  + G G+ G LG    +  FL   V     + PG+         +P    + AV CGYHH++ LSA+G V++CG
Sbjct:  135 VACGRYHTFAVSSDGRLFSWGGGKNGRLGTGTELRSFLPWPVSTVQEKVPGQPGNVRRSLAIPSECQIVAVECGYHHSVALSAIGVVYTCG 225
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BLAST of mRNA_H-canaliculatus_M_contigs9962.1.1 vs.
Match: HECT (domain-containing protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672I1F1_SALFA)

HSP 1 Score: 53.9 bits (128), Expect = 3.120e-5
Identity = 36/81 (44.44%), Postives = 44/81 (54.32%), Query Frame = 1 
Query:  295 VSFGKAHTLVVTPGGRALAAGSGRYGVLGA---RGNMNRFLFTEVDLKWGQFPGRVPVAAVACGYHHTLILSAVGTVHSCG 528
            VS G+AHT V+T  G     G GR+G LG    R  +   L TE+   WG       V AVACG HHTL+L+  G+V S G
Sbjct:  239 VSCGRAHTAVLTKDGAVFTFGCGRHGQLGHNSYRDELRPRLVTEL---WGS-----KVVAVACGSHHTLVLTRSGSVFSFG 311
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BLAST of mRNA_H-canaliculatus_M_contigs9962.1.1 vs.
Match: probable (E3 ubiquitin-protein ligase HERC3 isoform X3 n=1 Tax=Salarias fasciatus TaxID=181472 RepID=UPI0011765416)

HSP 1 Score: 53.9 bits (128), Expect = 3.130e-5
Identity = 36/81 (44.44%), Postives = 44/81 (54.32%), Query Frame = 1 
Query:  295 VSFGKAHTLVVTPGGRALAAGSGRYGVLGA---RGNMNRFLFTEVDLKWGQFPGRVPVAAVACGYHHTLILSAVGTVHSCG 528
            VS G+AHT V+T  G     G GR+G LG    R  +   L TE+   WG       V AVACG HHTL+L+  G+V S G
Sbjct:  239 VSCGRAHTAVLTKDGAVFTFGCGRHGQLGHNSYRDELRPRLVTEL---WGS-----KVVAVACGSHHTLVLTRSGSVFSFG 311
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BLAST of mRNA_H-canaliculatus_M_contigs9962.1.1 vs.
Match: HECT (domain-containing protein n=2 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672I2G7_SALFA)

HSP 1 Score: 53.9 bits (128), Expect = 3.150e-5
Identity = 36/81 (44.44%), Postives = 44/81 (54.32%), Query Frame = 1 
Query:  295 VSFGKAHTLVVTPGGRALAAGSGRYGVLGA---RGNMNRFLFTEVDLKWGQFPGRVPVAAVACGYHHTLILSAVGTVHSCG 528
            VS G+AHT V+T  G     G GR+G LG    R  +   L TE+   WG       V AVACG HHTL+L+  G+V S G
Sbjct:  239 VSCGRAHTAVLTKDGAVFTFGCGRHGQLGHNSYRDELRPRLVTEL---WGS-----KVVAVACGSHHTLVLTRSGSVFSFG 311
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BLAST of mRNA_H-canaliculatus_M_contigs9962.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IF97_9RHOD)

HSP 1 Score: 52.4 bits (124), Expect = 8.210e-5
Identity = 29/91 (31.87%), Postives = 47/91 (51.65%), Query Frame = 1 
Query:  295 VSFGKAHTLVVTPGGRALAAGSGRYGVLGARGNMNRFLFTEVDLKWGQFPGR---------VP----VAAVACGYHHTLILSAVGTVHSCG 528
            +  G+ H+L VT  GR  + G G+ G LG    +  FL   V     + PG+         +P    +  + CGYHH++++SA GT+++CG
Sbjct:  135 IGCGRYHSLAVTSDGRLFSWGGGKNGRLGTGTELRSFLPWPVSHVHEKVPGQPENVRRSLAIPSECRIVTIECGYHHSMVVSASGTLYTCG 225
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9962.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
Uncharacterized2.960e-7666.84protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hect1.610e-7362.96E3 ubiquitin ligase n=1 Tax=Ectocarpus siliculosus... [more]
Hypothetical1.550e-640.00protein (Fragment) n=1 Tax=Vannella sp. CB-2014 Ta... [more]
Similar1.470e-535.16to UVB-resistance protein UVR8 n=1 Tax=Cyanidiosch... [more]
HECT3.120e-544.44domain-containing protein n=1 Tax=Salarias fasciat... [more]
probable3.130e-544.44E3 ubiquitin-protein ligase HERC3 isoform X3 n=1 T... [more]
HECT3.150e-544.44domain-containing protein n=2 Tax=Salarias fasciat... [more]
Uncharacterized8.210e-531.87protein n=1 Tax=Cyanidiococcus yangmingshanensis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9962contigH-canaliculatus_M_contigs9962:596..3291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LDL9
PFAMsRCC1
Model size531
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.63e-74
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
Ec32 ortholog descriptionRegulator of chromosome condensation, RCC1
Ec32 orthologEc-15_000090.1
Descriptionguanyl-nucleotide exchange factor activity
Cds size531
COG categoryDZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854236.580088-CDS-H-canaliculatus_M_contigs9962:595..7121696854236.580088-CDS-H-canaliculatus_M_contigs9962:595..712Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9962 596..712 -
1696854236.5963461-CDS-H-canaliculatus_M_contigs9962:1237..13291696854236.5963461-CDS-H-canaliculatus_M_contigs9962:1237..1329Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9962 1238..1329 -
1696854236.607221-CDS-H-canaliculatus_M_contigs9962:2594..28211696854236.607221-CDS-H-canaliculatus_M_contigs9962:2594..2821Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9962 2595..2821 -
1696854236.6204646-CDS-H-canaliculatus_M_contigs9962:3196..32911696854236.6204646-CDS-H-canaliculatus_M_contigs9962:3196..3291Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9962 3197..3291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9962.1.1prot_H-canaliculatus_M_contigs9962.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9962 596..3291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9962.1.1

>prot_H-canaliculatus_M_contigs9962.1.1 ID=prot_H-canaliculatus_M_contigs9962.1.1|Name=mRNA_H-canaliculatus_M_contigs9962.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=177bp
QLPGLPLEILEEVILVTFCGPRDLAQVFAVSRGLRSLRQGCVTSLLEKLF
GGRPGAADALPWIRSHHGDKVNGNNLHDVSLVHWLHGIRDDAATGAYRVS
FGKAHTLVVTPGGRALAAGSGRYGVLGARGNMNRFLFTEVDLKWGQFPGR
VPVAAVACGYHHTLILSAVGTVHSCG*
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mRNA from alignment at H-canaliculatus_M_contigs9962:596..3291-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9962.1.1 ID=mRNA_H-canaliculatus_M_contigs9962.1.1|Name=mRNA_H-canaliculatus_M_contigs9962.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2696bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9962:596..3291- (Hapterophycus canaliculatus Oshoro7m male)
CAGCTCCCCGGCCTGCCGCTGGAGATCCTAGAAGAAGTTATCCTTGTGAC
TTTCTGCGGCCCGAGGGACCTTGCTCAAGTCTTCGCCGTCTCGCGGTGCG
TGTATTAAATCTCCTGCGTAGCGGTTGTGGTCCACCTGAGTTCAACCAAC
AAGCGATAGCGCCGTTCGTCTTATGTTCTTGCTCGATGGAGTTGGACTTC
CAGGGGTTGGTGCACCACAGGTTTGCGAAGGTTGTTCAGCTGGGCGTGAG
CGTTGATGGATTTTTGCCAGGTTTCCTGCCGACCGCTTTAGGTTTTCGAT
TCACGCGGCGTTTGGTGTCAAGTGCAGGACGTCGGACGTCGATTTTGTGT
TCCGATGCCGCGGTAGCGTAAGCGCGTGGCCTTCATTACGCGCACGCCAT
GCTCTCGCACACACCCATAAACACGAATCCCCGGGCCATGTTTGCACCGC
TACCATGTGTACAACGACAGCGGTCTCCGGTCTCTTCGTCAAGGGTGCGT
CACTAGTCTTCTGGAAAAGCTGTTCGGCGGAAGACCCGGGGCAGCTGATG
CCCTCCCATGGATCCGCTCGCACCACGGCGACAAGGTCAACGGCAACAAT
CTGCATGACGTCAGCCTGGTGCATTGGTTGCACGGCATAAGGGACGACGC
GGCCACGGGGGCCTACCGCGTCTCGTTTGGAAAGGCCCACACCCTCGGTA
GGAGGAGAGTAGAGGCAAGGGAGGTGGAGGAACAGAATGGGACAGGAGTT
AAAAAAACAAGTCAACAAGACCGAAGGAGTTCCCAGATGAGACACTGTCC
ATCTCAAGGGGCTTTTGTCAATTCCATTCAGTGAGGGGTCCATTCGAGTG
ACAGGATGAAATTGTGTATCAGTAGGCAAGTGGTGGACAACTGCGCGAAA
AACATGGGATGGGGGATGGATAAAAACAGAGAGGTGGTTTTTAAGAGATG
GATGGGATGTGGAAGAGAACAACAACGTATGCACCGCGAGATCTTTGATA
CCTCCTGCCTGTGATGATTCGCCGTGTGAGAGAATTCGCTGCCCGGGAGC
TTGGTGATCCATCGATTGATCCATCGGTCGAACCCTTGATGTCTGGTCAC
ATGTCTAATCCTTCATTGTCTTCCAGCAGTGGACCGAAATTACTCGAATT
TTACACACCTGAGAACACGCATACCGTTTGAGCTCGTCAGGGACACCGTG
GTGGGATAAGTCGCCGTCCCATATCTCGGTGCTGCTGCACCTGACAGTTC
CTTTCCGCTACGACCGTTTTGTCCACGCACCCCGTCGTCGGCTTTTGATT
ACGGGGCCGTCGTTGTCCACGAAGCTCAGCCGCCAAGGAGCGTGGAAGGG
TAGAGTGCCACAGGGGTGGCCACTGGGTGTGTGGCGTTCACTGGAGCTGT
TTGACTTGTTTCGACGAGGCTTCGAAGAGCCGAACTGCTTTCGCATCTTT
GGGCGTGTTTCGTCTCCAAGCGTGTGCTGCTTCCGGGGGTTCGAGCGAAA
AGCCTACGCATGAAAACCTCAATCATGAGATGGCAAAGGAACGGGCACAG
CACGTTGCAACGATAGCATGCAGCATGCATGGCGATGTCAGTGGCACATC
CATGGGAATAGTACCCTTCATGACGATGGCGACGGCGATCGTCATGACCC
CACACTTACCGCAGGGACGGAGCCGCTCGTCGGGCAGGATCGCGGGCGCA
GACCACATTTCAGCGTCGCACCACCGAGTATGCCTCTGCCAAGGCCCGAA
CTAAAAATGTACCCCAACGCGAAACAACCGATGTTTATTGCATTTTCCAG
TCGTGCTCGCTCGCGGTGCCTCTGTCGATGACGATGGAGCTTTTTATGCC
CTATCCTACATTTAACGACGTAGGTGGTTCTGCCCGCACTTTCGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGTTGCTCCCGTCGCTGAC
GACTTTCGTCAGTCGTGACCCCTGGCGGAAGGGCCCTCGCGGCCGGTAGC
GGGCGTTACGGTGTCTTGGGAGCCAGGGGCAACATGAACCGCTTCCTCTT
CACGGTAAGAAATCGAACAGCGCTGCACCGGCTGTTTTGCGCCTCCGAAA
GCTAGGCAAGGGAGACGGAAAGGCCCCAGGGAAAACAAGCGTGTTCATCT
GTGGATGCAACACCCTCATCCCGTCACCTTCGGTCTCCCGATTTCAGGGC
TGCAGTACGCGTATTTACGCCTCGGAGACGTGTCGTGCGCGCTCCCGCTT
CTGTTGCCTGGCCGTGCAAACATTAGCCTTCTCATTCCGCTCCCGTGTAT
CAGCCGAGATCAAGAGGGACAAAATTGAGGAATCTTGGGGTGACCTGGGT
GTTGTTGCGCTTCCCTTCCCCTGCCGATTACCTCGTCTCGACGGCTGTGC
TCGCTCCGGAGCGACCATCTTGTGCCTCTTCTGTATTTCGGCTGAGAAAA
GAAGGAGAAAGAAGACAAAATTGTGATGACCTATCCCTTCCCCTGCCACC
TCCCTTGGCCGTCGACCACCTCCCCCCACTGATTCCGCTGGCCGTCTTCT
CGTACCAACCACCTTTCCTTCCCTTTCAGGAGGTGGACCTGAAGTGGGGC
CAATTTCCCGGGCGAGTTCCGGTTGCGGCCGTGGCGTGCGGGTACCACCA
CACGCTTATCCTTTCCGCGGTGGGTACCGTGCACTCGTGTGGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9962:596..3291-

>mRNA_H-canaliculatus_M_contigs9962.1.1 ID=mRNA_H-canaliculatus_M_contigs9962.1.1|Name=mRNA_H-canaliculatus_M_contigs9962.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=531bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9962:596..3291- (Hapterophycus canaliculatus Oshoro7m male)
CAGCTCCCCGGCCTGCCGCTGGAGATCCTAGAAGAAGTTATCCTTGTGAC
TTTCTGCGGCCCGAGGGACCTTGCTCAAGTCTTCGCCGTCTCGCGCGGTC
TCCGGTCTCTTCGTCAAGGGTGCGTCACTAGTCTTCTGGAAAAGCTGTTC
GGCGGAAGACCCGGGGCAGCTGATGCCCTCCCATGGATCCGCTCGCACCA
CGGCGACAAGGTCAACGGCAACAATCTGCATGACGTCAGCCTGGTGCATT
GGTTGCACGGCATAAGGGACGACGCGGCCACGGGGGCCTACCGCGTCTCG
TTTGGAAAGGCCCACACCCTCGTCGTGACCCCTGGCGGAAGGGCCCTCGC
GGCCGGTAGCGGGCGTTACGGTGTCTTGGGAGCCAGGGGCAACATGAACC
GCTTCCTCTTCACGGAGGTGGACCTGAAGTGGGGCCAATTTCCCGGGCGA
GTTCCGGTTGCGGCCGTGGCGTGCGGGTACCACCACACGCTTATCCTTTC
CGCGGTGGGTACCGTGCACTCGTGTGGGTGA
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