mRNA_H-canaliculatus_M_contigs9951.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLY5_ECTSI) HSP 1 Score: 297 bits (760), Expect = 1.420e-95 Identity = 159/229 (69.43%), Postives = 175/229 (76.42%), Query Frame = 1
Query: 1 QPLSGRFLLAAVGTGVLEAIAYCPLELVKTRMQAC--SPAGVTVWSTGLQIYRQHGLFNGCYRGFSSMLLKEGLGNTVYFGSYEICKQQAFTGESAGTGAGA-------ERDGQAEQARPGVGPIVAAGGCAGVMYTAVTHPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPR-----------SGGSGGRKGFLGLYRGLSPAIARAFVGNSILFLTYENVLDALGR 627
QPLSGRF+LAA+GTGVLEAIAYCPLELVKTRMQ SPAGVTVW+TG QIYR HG+F G Y+GFSSMLLKEGLGNTVYFGSYE+CKQ A G S G G+ Q + G+GPIVAAGGCAGV+YT THPIDTVKSL+QTDS+KAPRYRGFLDGWRQ LA +G GG K FLGLYRGLSPAIARAF+GNS LF+TYE+VLD LGR
Sbjct: 149 QPLSGRFMLAAMGTGVLEAIAYCPLELVKTRMQVLRGSPAGVTVWTTGAQIYRHHGIFKGSYKGFSSMLLKEGLGNTVYFGSYELCKQ-ALGGRSTGGAVGSGXXXXXXXXXXXXHQEQAGIGPIVAAGGCAGVLYTVATHPIDTVKSLVQTDSIKAPRYRGFLDGWRQALAQGRRRHGVGRGDGAGAVGGVKAFLGLYRGLSPAIARAFLGNSALFVTYESVLDVLGR 376
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IN12_KLENI) HSP 1 Score: 117 bits (292), Expect = 9.780e-27 Identity = 80/223 (35.87%), Postives = 111/223 (49.78%), Query Frame = 1
Query: 13 GRFLLAAVGTGVLEAIAYCPLELVKTRMQACSPA----GVTVWSTGLQI--YRQHGLFN-------------GCYRGFSSMLLKEGLGNTVYFGSYEICKQQAFTGESAGTGAGAERDGQAEQARPGVGPIVAAGGCAGVMYTAVTHPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPRSGGSGGRKGFLGLYRGLSPAIARAFVGNSILFLTYENVLDALG 624
G+ LA G GV A+ CP EL+K R+QA PA GVT ++ +QI R +G + G Y+G LL+E GN FG+YE KQ G+ + ++ G G ++ AGG G M+ A +P D +KSL+Q D K P+Y G +D R++LA +G GLYRG PA+AR+ N+ FL YE V +LG
Sbjct: 114 GQQFLAGSGAGVGAALVACPTELIKCRLQAQGPAAALAGVTGGTSEVQIKTLRYNGPIDVARHVLQAERGVIGLYKGLVPTLLREVPGNAFMFGAYEYTKQLLAGGK--------------DTSKLGTGSLLVAGGVGGAMFWATVYPTDVIKSLVQIDDFKNPKYSGTIDAARKILAS--------EGVKGLYRGFGPAMARSVPANAAAFLAYEMVRSSLG 314
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Match: Uncharacterized (protein n=6 Tax=Malvoideae TaxID=214907 RepID=A0A0D2RPP0_GOSRA) HSP 1 Score: 109 bits (273), Expect = 2.210e-24 Identity = 70/212 (33.02%), Postives = 99/212 (46.70%), Query Frame = 1
Query: 25 LAAVGTGVLEAIAYCPLELVKTRMQACSPAGVTVWSTGL------------QIYRQHGLFNGCYRGFSSMLLKEGLGNTVYFGSYEICKQQAFTGESAGTGAGAERDGQAEQARPGVGPIVAAGGCAGVMYTAVTHPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPRSGGSGGRKGFLGLYRGLSPAIARAFVGNSILFLTYENVLDALG 624
+A G GV + CP EL+K R+QA S V S G+ Q+ R G G ++G L +E GN FG YE KQ G + ++ G G ++ AGG AG + + +P D VKS+LQ D K P+Y+G + +R +LA +G GLY+G PA+AR+ N+ FL YE +LG
Sbjct: 83 IAGAGAGVAVSFLACPTELIKCRLQAQSALAVDAGSAGVAVKYGGPMDVAKQVLRSEGGARGLFKGLVPTLAREVPGNAAMFGVYEALKQYMAGGT--------------DTSKLGRGSLIVAGGLAGASFWSSVYPTDVVKSVLQVDDYKNPKYKGSMHAFRSILAS--------EGVKGLYKGFGPAMARSIPANAACFLAYEVTRSSLG 272
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Match: Predicted (protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A9TMK8_PHYPA) HSP 1 Score: 110 bits (274), Expect = 3.100e-24 Identity = 70/223 (31.39%), Postives = 107/223 (47.98%), Query Frame = 1
Query: 13 GRFLLAAVGTGVLEAIAYCPLELVKTRMQACSPAGVTV-------------------WSTGLQIYRQHGLFNGCYRGFSSMLLKEGLGNTVYFGSYEICKQQAFTGESAGTGAGAERDGQAEQARPGVGPIVAAGGCAGVMYTAVTHPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPRSGGSGGRKGFLGLYRGLSPAIARAFVGNSILFLTYENVLDALG 624
G+ ++A G GV ++ CP ELVK R+QA S TV + + + G G Y+G + L++E GN FG+YE KQ G+ + ++ G ++ AGG AG M+ +P D +KS++Q D + P+Y+G +D +R+V A +G GLYRG PA+AR+ N+ FL YE V ++LG
Sbjct: 106 GQQMVAGAGAGVACSMVACPTELVKCRLQAQSALATTVEIPVLAGIGGAPAGRYNGPFDVAKHVLKSEGGVLGLYKGLTPTLMREVPGNAAMFGAYEATKQYLAGGQ--------------DTSKLSRGSMLFAGGVAGAMFWVSVYPTDVIKSVIQVDDHRNPKYKGTMDAFRKVFAA--------EGVKGLYRGFGPAMARSVPANAACFLAYELVRESLG 306
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Match: mitochondrial (carnitine/acylcarnitine carrier-like protein n=25 Tax=Malvaceae TaxID=3629 RepID=A0A1U8MST0_GOSHI) HSP 1 Score: 109 bits (273), Expect = 3.710e-24 Identity = 70/212 (33.02%), Postives = 99/212 (46.70%), Query Frame = 1
Query: 25 LAAVGTGVLEAIAYCPLELVKTRMQACSPAGVTVWSTGL------------QIYRQHGLFNGCYRGFSSMLLKEGLGNTVYFGSYEICKQQAFTGESAGTGAGAERDGQAEQARPGVGPIVAAGGCAGVMYTAVTHPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPRSGGSGGRKGFLGLYRGLSPAIARAFVGNSILFLTYENVLDALG 624
+A G GV + CP EL+K R+QA S V S G+ Q+ R G G ++G L +E GN FG YE KQ G + ++ G G ++ AGG AG + + +P D VKS+LQ D K P+Y+G + +R +LA +G GLY+G PA+AR+ N+ FL YE +LG
Sbjct: 109 IAGAGAGVAVSFLACPTELIKCRLQAQSALAVDAGSAGVAVKYGGPMDVAKQVLRSEGGARGLFKGLVPTLAREVPGNAAMFGVYEALKQYMAGGT--------------DTSKLGRGSLIVAGGLAGASFWSSVYPTDVVKSVLQVDDYKNPKYKGSMHAFRSILAS--------EGVKGLYKGFGPAMARSIPANAACFLAYEVTRSSLG 298
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Match: Mitochondrial (carnitine/acylcarnitine carrier-like protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AWU4_9ASPA) HSP 1 Score: 107 bits (268), Expect = 1.900e-23 Identity = 72/212 (33.96%), Postives = 101/212 (47.64%), Query Frame = 1
Query: 25 LAAVGTGVLEAIAYCPLELVKTRMQA------CSPAGVTVWSTG------LQIYRQHGLFNGCYRGFSSMLLKEGLGNTVYFGSYEICKQQAFTGESAGTGAGAERDGQAEQARPGVGPIVAAGGCAGVMYTAVTHPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPRSGGSGGRKGFLGLYRGLSPAIARAFVGNSILFLTYENVLDALG 624
+ G GV + CP EL+K R+QA S A G Q+ R G G Y+G L +E GN + FG YE KQ F G + +R G GP++ AGG AG + A +P D VKS++Q D+ + P++ G +D +R++LA +G GLYRG PA+AR+ N+ FL YE +LG
Sbjct: 109 ICGAGAGVAVSFLACPTELIKCRLQAQSALAESSSAATRAIKYGGPLDVAKQVLRSEGGIRGLYKGLLPTLAREIPGNAIMFGVYEALKQ-FFAGGP-------------DTSRLGRGPLIVAGGLAGASFWASVYPTDVVKSVIQVDNYRNPKFSGSVDAFRKILAS--------EGVKGLYRGFGPAMARSVPANAACFLAYEVTRSSLG 298
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QKX6_VANPL) HSP 1 Score: 105 bits (263), Expect = 2.410e-23 Identity = 72/212 (33.96%), Postives = 99/212 (46.70%), Query Frame = 1
Query: 25 LAAVGTGVLEAIAYCPLELVKTRMQA-------CSPAGVTVWSTG-----LQIYRQHGLFNGCYRGFSSMLLKEGLGNTVYFGSYEICKQQAFTGESAGTGAGAERDGQAEQARPGVGPIVAAGGCAGVMYTAVTHPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPRSGGSGGRKGFLGLYRGLSPAIARAFVGNSILFLTYENVLDALG 624
+ G G + CP EL+K R+QA SPA V G Q+ R G G ++G L +E GN FG YE KQ F G +G G G +V AGG AG + +P D +KS++Q D + P+YRG +D +R++L+ +G GLYRG SPA+AR+ N+ FL YE +LG
Sbjct: 41 ICGAGAGAAVSFLACPTELIKCRLQAQGALAESASPATSVVKYGGPMDVAKQVLRSEGGLRGLFKGLVPTLAREVPGNAAMFGVYEALKQY-FAGGRDASGLGR-------------GSLVVAGGVAGASFWLSVYPTDVIKSVIQVDDYRNPKYRGSIDAFRKILSS--------EGVRGLYRGFSPAMARSVPANAACFLAYEVTRTSLG 230
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Match: Uncharacterized (protein n=6 Tax=Prunus TaxID=3754 RepID=M5VLF3_PRUPE) HSP 1 Score: 107 bits (267), Expect = 2.590e-23 Identity = 73/215 (33.95%), Postives = 103/215 (47.91%), Query Frame = 1
Query: 13 GRFLLAAVGTGVLEAIAYCPLELVKTRMQACSP------AGVTVWSTG-----LQIYRQHGLFNGCYRGFSSMLLKEGLGNTVYFGSYEICKQQAFTGESAGTGAGAERDGQAEQARPGVGPIVAAGGCAGVMYTAVTHPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPRSGGSGGRKGFLGLYRGLSPAIARAFVGNSILFLTYENVLDALG 624
G+ ++ G GV + CP EL+K R+QA S G TV G Q+ R G G ++G + +E GN FG+YE KQ F G +G G G ++ AGG AG + A +P D VKS++Q D K P++ G +D +R++LA +G GLYRG PA+AR+ N+ FL YE +LG
Sbjct: 105 GQQVICGAGAGVAVSFLACPTELIKCRLQAQSAMGDSGSVGATVKYGGPLDVAKQVLRSEGGTRGLFKGLVPTMAREIPGNAALFGAYEALKQ-FFAGGQDTSGLGR-------------GSLIVAGGLAGAAFWASVYPTDVVKSVIQVDDYKNPKFSGSIDAFRKILAS--------EGVKGLYRGFGPAMARSVPANAACFLAYEVTRSSLG 297
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8JTJ7_MUSBA) HSP 1 Score: 108 bits (270), Expect = 3.310e-23 Identity = 72/211 (34.12%), Postives = 99/211 (46.92%), Query Frame = 1
Query: 25 LAAVGTGVLEAIAYCPLELVKTRMQACSPAGVTVWSTGLQIY-----------RQHGLFNGCYRGFSSMLLKEGLGNTVYFGSYEICKQQAFTGESAGTGAGAERDGQAEQARPGVGPIVAAGGCAGVMYTAVTHPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPRSGGSGGRKGFLGLYRGLSPAIARAFVGNSILFLTYENVLDALG 624
+ G GV + P EL+K R+QA S + S+ Y R+ G F G Y+G L +E GN FG YE KQ G+ + +R G GP++ AGG AG + +P D VKS++Q D K P+Y G LD +R++LA +G GLYRG PA+AR+ N+ FL YE +LG
Sbjct: 186 VCGAGAGVAVSFLASPTELIKCRLQAQSALADSAASSAAAKYGGPIDVAKHVVREAG-FRGLYKGLVPTLAREAPGNAAMFGVYEALKQYFAGGQ--------------DTSRLGRGPLIVAGGLAGASFWLFVYPTDVVKSVIQVDGFKNPKYSGSLDAFRRILAA--------EGMKGLYRGFGPAMARSVPANAACFLAYEVTRSSLG 373
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Match: Uncharacterized (protein n=4 Tax=Cucumis TaxID=3655 RepID=A0A0A0LI40_CUCSA) HSP 1 Score: 105 bits (263), Expect = 3.520e-23 Identity = 68/211 (32.23%), Postives = 101/211 (47.87%), Query Frame = 1
Query: 25 LAAVGTGVLEAIAYCPLELVKTRMQACSP------AGVTVWSTG-----LQIYRQHGLFNGCYRGFSSMLLKEGLGNTVYFGSYEICKQQAFTGESAGTGAGAERDGQAEQARPGVGPIVAAGGCAGVMYTAVTHPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPRSGGSGGRKGFLGLYRGLSPAIARAFVGNSILFLTYENVLDALG 624
+ G G+ ++ CP EL+K R+QA S GV V G + + HG+ NG ++G L +E GN V FG YE+ KQQ G + G G ++ AGG +G Y +P D +KS++Q D K P++ G +D +R++LA +G GLY+G PA+ R+ N+ FL YE +LG
Sbjct: 60 VCGAGAGIAVSLVACPTELIKCRLQAQSALAASNSVGVAVKYGGPMDVAKHVLKSHGI-NGLFKGMVPTLAREVPGNAVVFGVYELLKQQFAGGRKT--------------SNLGRGSLMVAGGVSGAAYWLAVYPTDVIKSVIQVDDFKNPKFSGSMDAFRKILA--------LEGVKGLYKGFGPAMLRSVPANAACFLVYEITRSSLG 247 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs9951.2.1 >prot_H-canaliculatus_M_contigs9951.2.1 ID=prot_H-canaliculatus_M_contigs9951.2.1|Name=mRNA_H-canaliculatus_M_contigs9951.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=179bp MQACSPAGVTVWSTGLQIYRQHGLFNGCYRGFSSMLLKEGLGNTVYFGSYback to top mRNA from alignment at H-canaliculatus_M_contigs9951:1509..4336- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs9951.2.1 ID=mRNA_H-canaliculatus_M_contigs9951.2.1|Name=mRNA_H-canaliculatus_M_contigs9951.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2828bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9951:1509..4336- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9951:1509..4336- >mRNA_H-canaliculatus_M_contigs9951.2.1 ID=mRNA_H-canaliculatus_M_contigs9951.2.1|Name=mRNA_H-canaliculatus_M_contigs9951.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=537bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9951:1509..4336- (Hapterophycus canaliculatus Oshoro7m male)back to top |