mRNA_H-canaliculatus_M_contigs9951.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9951.2.1
Unique NamemRNA_H-canaliculatus_M_contigs9951.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLY5_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 1.420e-95
Identity = 159/229 (69.43%), Postives = 175/229 (76.42%), Query Frame = 1
Query:    1 QPLSGRFLLAAVGTGVLEAIAYCPLELVKTRMQAC--SPAGVTVWSTGLQIYRQHGLFNGCYRGFSSMLLKEGLGNTVYFGSYEICKQQAFTGESAGTGAGA-------ERDGQAEQARPGVGPIVAAGGCAGVMYTAVTHPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPR-----------SGGSGGRKGFLGLYRGLSPAIARAFVGNSILFLTYENVLDALGR 627
            QPLSGRF+LAA+GTGVLEAIAYCPLELVKTRMQ    SPAGVTVW+TG QIYR HG+F G Y+GFSSMLLKEGLGNTVYFGSYE+CKQ A  G S G   G+              Q + G+GPIVAAGGCAGV+YT  THPIDTVKSL+QTDS+KAPRYRGFLDGWRQ LA             +G  GG K FLGLYRGLSPAIARAF+GNS LF+TYE+VLD LGR
Sbjct:  149 QPLSGRFMLAAMGTGVLEAIAYCPLELVKTRMQVLRGSPAGVTVWTTGAQIYRHHGIFKGSYKGFSSMLLKEGLGNTVYFGSYELCKQ-ALGGRSTGGAVGSGXXXXXXXXXXXXHQEQAGIGPIVAAGGCAGVLYTVATHPIDTVKSLVQTDSIKAPRYRGFLDGWRQALAQGRRRHGVGRGDGAGAVGGVKAFLGLYRGLSPAIARAFLGNSALFVTYESVLDVLGR 376          
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IN12_KLENI)

HSP 1 Score: 117 bits (292), Expect = 9.780e-27
Identity = 80/223 (35.87%), Postives = 111/223 (49.78%), Query Frame = 1
Query:   13 GRFLLAAVGTGVLEAIAYCPLELVKTRMQACSPA----GVTVWSTGLQI--YRQHGLFN-------------GCYRGFSSMLLKEGLGNTVYFGSYEICKQQAFTGESAGTGAGAERDGQAEQARPGVGPIVAAGGCAGVMYTAVTHPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPRSGGSGGRKGFLGLYRGLSPAIARAFVGNSILFLTYENVLDALG 624
            G+  LA  G GV  A+  CP EL+K R+QA  PA    GVT  ++ +QI   R +G  +             G Y+G    LL+E  GN   FG+YE  KQ    G+              + ++ G G ++ AGG  G M+ A  +P D +KSL+Q D  K P+Y G +D  R++LA         +G  GLYRG  PA+AR+   N+  FL YE V  +LG
Sbjct:  114 GQQFLAGSGAGVGAALVACPTELIKCRLQAQGPAAALAGVTGGTSEVQIKTLRYNGPIDVARHVLQAERGVIGLYKGLVPTLLREVPGNAFMFGAYEYTKQLLAGGK--------------DTSKLGTGSLLVAGGVGGAMFWATVYPTDVIKSLVQIDDFKNPKYSGTIDAARKILAS--------EGVKGLYRGFGPAMARSVPANAAAFLAYEMVRSSLG 314          
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Match: Uncharacterized (protein n=6 Tax=Malvoideae TaxID=214907 RepID=A0A0D2RPP0_GOSRA)

HSP 1 Score: 109 bits (273), Expect = 2.210e-24
Identity = 70/212 (33.02%), Postives = 99/212 (46.70%), Query Frame = 1
Query:   25 LAAVGTGVLEAIAYCPLELVKTRMQACSPAGVTVWSTGL------------QIYRQHGLFNGCYRGFSSMLLKEGLGNTVYFGSYEICKQQAFTGESAGTGAGAERDGQAEQARPGVGPIVAAGGCAGVMYTAVTHPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPRSGGSGGRKGFLGLYRGLSPAIARAFVGNSILFLTYENVLDALG 624
            +A  G GV  +   CP EL+K R+QA S   V   S G+            Q+ R  G   G ++G    L +E  GN   FG YE  KQ    G               + ++ G G ++ AGG AG  + +  +P D VKS+LQ D  K P+Y+G +  +R +LA         +G  GLY+G  PA+AR+   N+  FL YE    +LG
Sbjct:   83 IAGAGAGVAVSFLACPTELIKCRLQAQSALAVDAGSAGVAVKYGGPMDVAKQVLRSEGGARGLFKGLVPTLAREVPGNAAMFGVYEALKQYMAGGT--------------DTSKLGRGSLIVAGGLAGASFWSSVYPTDVVKSVLQVDDYKNPKYKGSMHAFRSILAS--------EGVKGLYKGFGPAMARSIPANAACFLAYEVTRSSLG 272          
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Match: Predicted (protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A9TMK8_PHYPA)

HSP 1 Score: 110 bits (274), Expect = 3.100e-24
Identity = 70/223 (31.39%), Postives = 107/223 (47.98%), Query Frame = 1
Query:   13 GRFLLAAVGTGVLEAIAYCPLELVKTRMQACSPAGVTV-------------------WSTGLQIYRQHGLFNGCYRGFSSMLLKEGLGNTVYFGSYEICKQQAFTGESAGTGAGAERDGQAEQARPGVGPIVAAGGCAGVMYTAVTHPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPRSGGSGGRKGFLGLYRGLSPAIARAFVGNSILFLTYENVLDALG 624
            G+ ++A  G GV  ++  CP ELVK R+QA S    TV                   +     + +  G   G Y+G +  L++E  GN   FG+YE  KQ    G+              + ++   G ++ AGG AG M+    +P D +KS++Q D  + P+Y+G +D +R+V A         +G  GLYRG  PA+AR+   N+  FL YE V ++LG
Sbjct:  106 GQQMVAGAGAGVACSMVACPTELVKCRLQAQSALATTVEIPVLAGIGGAPAGRYNGPFDVAKHVLKSEGGVLGLYKGLTPTLMREVPGNAAMFGAYEATKQYLAGGQ--------------DTSKLSRGSMLFAGGVAGAMFWVSVYPTDVIKSVIQVDDHRNPKYKGTMDAFRKVFAA--------EGVKGLYRGFGPAMARSVPANAACFLAYELVRESLG 306          
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Match: mitochondrial (carnitine/acylcarnitine carrier-like protein n=25 Tax=Malvaceae TaxID=3629 RepID=A0A1U8MST0_GOSHI)

HSP 1 Score: 109 bits (273), Expect = 3.710e-24
Identity = 70/212 (33.02%), Postives = 99/212 (46.70%), Query Frame = 1
Query:   25 LAAVGTGVLEAIAYCPLELVKTRMQACSPAGVTVWSTGL------------QIYRQHGLFNGCYRGFSSMLLKEGLGNTVYFGSYEICKQQAFTGESAGTGAGAERDGQAEQARPGVGPIVAAGGCAGVMYTAVTHPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPRSGGSGGRKGFLGLYRGLSPAIARAFVGNSILFLTYENVLDALG 624
            +A  G GV  +   CP EL+K R+QA S   V   S G+            Q+ R  G   G ++G    L +E  GN   FG YE  KQ    G               + ++ G G ++ AGG AG  + +  +P D VKS+LQ D  K P+Y+G +  +R +LA         +G  GLY+G  PA+AR+   N+  FL YE    +LG
Sbjct:  109 IAGAGAGVAVSFLACPTELIKCRLQAQSALAVDAGSAGVAVKYGGPMDVAKQVLRSEGGARGLFKGLVPTLAREVPGNAAMFGVYEALKQYMAGGT--------------DTSKLGRGSLIVAGGLAGASFWSSVYPTDVVKSVLQVDDYKNPKYKGSMHAFRSILAS--------EGVKGLYKGFGPAMARSIPANAACFLAYEVTRSSLG 298          
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Match: Mitochondrial (carnitine/acylcarnitine carrier-like protein n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AWU4_9ASPA)

HSP 1 Score: 107 bits (268), Expect = 1.900e-23
Identity = 72/212 (33.96%), Postives = 101/212 (47.64%), Query Frame = 1
Query:   25 LAAVGTGVLEAIAYCPLELVKTRMQA------CSPAGVTVWSTG------LQIYRQHGLFNGCYRGFSSMLLKEGLGNTVYFGSYEICKQQAFTGESAGTGAGAERDGQAEQARPGVGPIVAAGGCAGVMYTAVTHPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPRSGGSGGRKGFLGLYRGLSPAIARAFVGNSILFLTYENVLDALG 624
            +   G GV  +   CP EL+K R+QA       S A       G       Q+ R  G   G Y+G    L +E  GN + FG YE  KQ  F G               + +R G GP++ AGG AG  + A  +P D VKS++Q D+ + P++ G +D +R++LA         +G  GLYRG  PA+AR+   N+  FL YE    +LG
Sbjct:  109 ICGAGAGVAVSFLACPTELIKCRLQAQSALAESSSAATRAIKYGGPLDVAKQVLRSEGGIRGLYKGLLPTLAREIPGNAIMFGVYEALKQ-FFAGGP-------------DTSRLGRGPLIVAGGLAGASFWASVYPTDVVKSVIQVDNYRNPKFSGSVDAFRKILAS--------EGVKGLYRGFGPAMARSVPANAACFLAYEVTRSSLG 298          
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QKX6_VANPL)

HSP 1 Score: 105 bits (263), Expect = 2.410e-23
Identity = 72/212 (33.96%), Postives = 99/212 (46.70%), Query Frame = 1
Query:   25 LAAVGTGVLEAIAYCPLELVKTRMQA-------CSPAGVTVWSTG-----LQIYRQHGLFNGCYRGFSSMLLKEGLGNTVYFGSYEICKQQAFTGESAGTGAGAERDGQAEQARPGVGPIVAAGGCAGVMYTAVTHPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPRSGGSGGRKGFLGLYRGLSPAIARAFVGNSILFLTYENVLDALG 624
            +   G G   +   CP EL+K R+QA        SPA   V   G      Q+ R  G   G ++G    L +E  GN   FG YE  KQ  F G    +G G              G +V AGG AG  +    +P D +KS++Q D  + P+YRG +D +R++L+         +G  GLYRG SPA+AR+   N+  FL YE    +LG
Sbjct:   41 ICGAGAGAAVSFLACPTELIKCRLQAQGALAESASPATSVVKYGGPMDVAKQVLRSEGGLRGLFKGLVPTLAREVPGNAAMFGVYEALKQY-FAGGRDASGLGR-------------GSLVVAGGVAGASFWLSVYPTDVIKSVIQVDDYRNPKYRGSIDAFRKILSS--------EGVRGLYRGFSPAMARSVPANAACFLAYEVTRTSLG 230          
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Match: Uncharacterized (protein n=6 Tax=Prunus TaxID=3754 RepID=M5VLF3_PRUPE)

HSP 1 Score: 107 bits (267), Expect = 2.590e-23
Identity = 73/215 (33.95%), Postives = 103/215 (47.91%), Query Frame = 1
Query:   13 GRFLLAAVGTGVLEAIAYCPLELVKTRMQACSP------AGVTVWSTG-----LQIYRQHGLFNGCYRGFSSMLLKEGLGNTVYFGSYEICKQQAFTGESAGTGAGAERDGQAEQARPGVGPIVAAGGCAGVMYTAVTHPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPRSGGSGGRKGFLGLYRGLSPAIARAFVGNSILFLTYENVLDALG 624
            G+ ++   G GV  +   CP EL+K R+QA S        G TV   G      Q+ R  G   G ++G    + +E  GN   FG+YE  KQ  F G    +G G              G ++ AGG AG  + A  +P D VKS++Q D  K P++ G +D +R++LA         +G  GLYRG  PA+AR+   N+  FL YE    +LG
Sbjct:  105 GQQVICGAGAGVAVSFLACPTELIKCRLQAQSAMGDSGSVGATVKYGGPLDVAKQVLRSEGGTRGLFKGLVPTMAREIPGNAALFGAYEALKQ-FFAGGQDTSGLGR-------------GSLIVAGGLAGAAFWASVYPTDVVKSVIQVDDYKNPKFSGSIDAFRKILAS--------EGVKGLYRGFGPAMARSVPANAACFLAYEVTRSSLG 297          
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8JTJ7_MUSBA)

HSP 1 Score: 108 bits (270), Expect = 3.310e-23
Identity = 72/211 (34.12%), Postives = 99/211 (46.92%), Query Frame = 1
Query:   25 LAAVGTGVLEAIAYCPLELVKTRMQACSPAGVTVWSTGLQIY-----------RQHGLFNGCYRGFSSMLLKEGLGNTVYFGSYEICKQQAFTGESAGTGAGAERDGQAEQARPGVGPIVAAGGCAGVMYTAVTHPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPRSGGSGGRKGFLGLYRGLSPAIARAFVGNSILFLTYENVLDALG 624
            +   G GV  +    P EL+K R+QA S    +  S+    Y           R+ G F G Y+G    L +E  GN   FG YE  KQ    G+              + +R G GP++ AGG AG  +    +P D VKS++Q D  K P+Y G LD +R++LA         +G  GLYRG  PA+AR+   N+  FL YE    +LG
Sbjct:  186 VCGAGAGVAVSFLASPTELIKCRLQAQSALADSAASSAAAKYGGPIDVAKHVVREAG-FRGLYKGLVPTLAREAPGNAAMFGVYEALKQYFAGGQ--------------DTSRLGRGPLIVAGGLAGASFWLFVYPTDVVKSVIQVDGFKNPKYSGSLDAFRRILAA--------EGMKGLYRGFGPAMARSVPANAACFLAYEVTRSSLG 373          
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Match: Uncharacterized (protein n=4 Tax=Cucumis TaxID=3655 RepID=A0A0A0LI40_CUCSA)

HSP 1 Score: 105 bits (263), Expect = 3.520e-23
Identity = 68/211 (32.23%), Postives = 101/211 (47.87%), Query Frame = 1
Query:   25 LAAVGTGVLEAIAYCPLELVKTRMQACSP------AGVTVWSTG-----LQIYRQHGLFNGCYRGFSSMLLKEGLGNTVYFGSYEICKQQAFTGESAGTGAGAERDGQAEQARPGVGPIVAAGGCAGVMYTAVTHPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPRSGGSGGRKGFLGLYRGLSPAIARAFVGNSILFLTYENVLDALG 624
            +   G G+  ++  CP EL+K R+QA S        GV V   G       + + HG+ NG ++G    L +E  GN V FG YE+ KQQ   G                 +  G G ++ AGG +G  Y    +P D +KS++Q D  K P++ G +D +R++LA         +G  GLY+G  PA+ R+   N+  FL YE    +LG
Sbjct:   60 VCGAGAGIAVSLVACPTELIKCRLQAQSALAASNSVGVAVKYGGPMDVAKHVLKSHGI-NGLFKGMVPTLAREVPGNAVVFGVYELLKQQFAGGRKT--------------SNLGRGSLMVAGGVSGAAYWLAVYPTDVIKSVIQVDDFKNPKFSGSMDAFRKILA--------LEGVKGLYKGFGPAMLRSVPANAACFLVYEITRSSLG 247          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9951.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.420e-9569.43protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLY5... [more]
Uncharacterized9.780e-2735.87protein n=1 Tax=Klebsormidium nitens TaxID=105231 ... [more]
Uncharacterized2.210e-2433.02protein n=6 Tax=Malvoideae TaxID=214907 RepID=A0A0... [more]
Predicted3.100e-2431.39protein n=3 Tax=Physcomitrium patens TaxID=3218 Re... [more]
mitochondrial3.710e-2433.02carnitine/acylcarnitine carrier-like protein n=25 ... [more]
Mitochondrial1.900e-2333.96carnitine/acylcarnitine carrier-like protein n=1 T... [more]
Uncharacterized2.410e-2333.96protein n=1 Tax=Vanilla planifolia TaxID=51239 Rep... [more]
Uncharacterized2.590e-2333.95protein n=6 Tax=Prunus TaxID=3754 RepID=M5VLF3_PRU... [more]
Uncharacterized3.310e-2334.12protein n=1 Tax=Musa balbisiana TaxID=52838 RepID=... [more]
Uncharacterized3.520e-2332.23protein n=4 Tax=Cucumis TaxID=3655 RepID=A0A0A0LI4... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9951contigH-canaliculatus_M_contigs9951:1509..4336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LLY5
PFAMsMito_carr
Model size996
Max annot lvl2759|Eukaryota
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.08e-77
EggNOG OGsKOG0762@1|root,KOG0762@2759|Eukaryota
Ec32 ortholog descriptionMitochondrial carrier domain
Ec32 orthologEc-14_002120.1
DescriptionBelongs to the mitochondrial carrier (TC 2.A.29) family
Cds size537
COG categoryU
BRITEko00000,ko00001,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9951.2.1prot_H-canaliculatus_M_contigs9951.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9951 1875..4243 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854235.9907806-UTR-H-canaliculatus_M_contigs9951:1508..18741696854235.9907806-UTR-H-canaliculatus_M_contigs9951:1508..1874Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs9951 1509..1874 -
1696854236.0526316-UTR-H-canaliculatus_M_contigs9951:4243..43361696854236.0526316-UTR-H-canaliculatus_M_contigs9951:4243..4336Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs9951 4244..4336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854236.0039306-CDS-H-canaliculatus_M_contigs9951:1874..22461696854236.0039306-CDS-H-canaliculatus_M_contigs9951:1874..2246Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9951 1875..2246 -
1696854236.0149078-CDS-H-canaliculatus_M_contigs9951:2899..29861696854236.0149078-CDS-H-canaliculatus_M_contigs9951:2899..2986Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9951 2900..2986 -
1696854236.0260103-CDS-H-canaliculatus_M_contigs9951:3631..36991696854236.0260103-CDS-H-canaliculatus_M_contigs9951:3631..3699Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9951 3632..3699 -
1696854236.0392282-CDS-H-canaliculatus_M_contigs9951:4233..42431696854236.0392282-CDS-H-canaliculatus_M_contigs9951:4233..4243Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9951 4234..4243 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9951.2.1

>prot_H-canaliculatus_M_contigs9951.2.1 ID=prot_H-canaliculatus_M_contigs9951.2.1|Name=mRNA_H-canaliculatus_M_contigs9951.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=179bp
MQACSPAGVTVWSTGLQIYRQHGLFNGCYRGFSSMLLKEGLGNTVYFGSY
EICKQQAFTGESAGTGAGAERDGQAEQARPGVGPIVAAGGCAGVMYTAVT
HPIDTVKSLLQTDSMKAPRYRGFLDGWRQVLAPRSGGSGGRKGFLGLYRG
LSPAIARAFVGNSILFLTYENVLDALGR*
back to top

mRNA from alignment at H-canaliculatus_M_contigs9951:1509..4336-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9951.2.1 ID=mRNA_H-canaliculatus_M_contigs9951.2.1|Name=mRNA_H-canaliculatus_M_contigs9951.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2828bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9951:1509..4336- (Hapterophycus canaliculatus Oshoro7m male)
CAGCCCTTGAGCGGGCGGTTCCTACTGGCGGCGGTCGGGACGGGTGTCCT GGAGGCGATCGCGTACTGTCCTCTCGAGCTCGTCAAGACTCGCATGCAGG CATGTTTTGAAAGCGGGAGGCACGGGGAGTTCTGTCGCACGTGGCGCACG CGTTGCTTTCTGTACGCGCTTCGTAGCAGACCACCACGCACACCAGCAGT TTCGAGGTGCAGCGGCAGAACCTCGGGCATGCCCGCACGGAGGCCAATGG TTGCCGGTCGAGGGGGCTTGCGTTACGCCTGACTTCCTCGAGAAAGTGGC GTGCTTGCGCTGCACAGTCGTGGGCATGTATAGCGTGTACAATCGACAAC CACGTTTACCGATTGCTTTTGGTCGTCGTCTCGTTTCGCTCGTGATATTT TCCCCCAAGTTCGGTTGGCTTGCGACTTCTTGAAATTTTTGCTGGTATGG GCTGGCTTTTCCTTCCGCTGAGTCTCCGGCCTTCAAACGACATACAATGA CCAATGACCATTATCTGTCAGACGAGGTGATCACTTCACTACCAATTTTT GTCGCATCCGTGTCCCGAAAGCACATACTGTATTTACGTCGTTTTTCATT CCGTCCCTTTTTTTTTTATTCGGTTAGGTGCTGAGAGGTTCCCCCGCGGG CGTGACGGTGTGGTCCACGGGCCTCCAAATTTACCGCCAGCACGGGCTCT TTAATGTGAGCAAGGCGACTACTGTAGCCGCGAAACTATGATCGCAAACG AGGCTGAGGAACAGAACGGATCACTTACGGAGGCTGGCGACTTTCGCTGC CGCGCCGCTCTCTGGTCCTGCTGGTCGGCAAACAACACGGAGTGATTGCT CGCTTCCTCGTTCTTTGGTTGATGCCTCTAGCAATCGATTTTCAGACGCT ATCATTGTAACGCCAAGTTCGTCCTGACTCGGCGAACAAACTCGTAGTAA CATCCGAACCTATTCTGCATACCCTCTCCCTTCTTGCCAAGGGGATGACA GTAGTCAATTCGTGGCATCTGCTCTCCCTTGATCTGAGCTTTCAAAAAGA AGCGAAACGAAAATCAGCGGCACGATTTCTACTGCTCTTCAGGGTTGTCT TTTTCGACCCCGGTGTCTGCATACCAAGGCTTTGCAAACATCATGAAACA TAACGCCGTGTATTGATGGAGGAGCTCCGGAGGCTGGGTCGAGAGGAAAA TGCCACGCATTTTTTACGAGTGTCATCACCTCCCTCTCTCGTACTCGCGA GAGCTCTACCCTGTTCATTTCCATTACTCTGTCTCGTCCAACTGTCCCCC TGTGCTCGTCGTGTTTTGTTTTGAACGGCCCTGTCCGTCGTCGCGCGCAG GGCTGCTACAGAGGGTTTTCGTCGATGCTCCTCAAAGAGGGCCTCGGCAA CACCGTCTACTTCGGCTCGTACGAGATCTGCAAGCAGGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGCATGTGTGTCGGGAAG CCCAACCTGCGGCTTCTTTCTCCACGGTGGATCGATCTTCTTGGTTGCGA AGGGACCGAGGACGGGCAGCATCAACTATTACAATGCGATGAAAGTAAGA ACGAGGACAGAAAAAGTCTGCCACAGCTGAGCGAGCTTCGCGGCGGCACC TCGACGCACGCGCGAGATCCAAACACTCGCCCCTGCTCCGGTCCTCCCTG TTGTATGGCTATCGGCGCCTCATCGTCTCACACCCCGAATCCCCTCACCT TCGTTACCTGCGGCCACGATAAACACCCCCGTACTTCTCACTCATGTAAA TGTGCCGGTGCGCAACAAAAGGGTTTGACCATCCGATCGCACAGTAGCCA CCCACAGTGGCGATCCCCTCGAGCATTTCCGTGGGCATGCGTATTCACAC ACAACCGAAAGACGAACGTTCTTCTTTATCCATCTATATGCTTGTGGCTT GAAGGAGACTTCATTTTTCGCTGATGAGCCGGTAAAATATTGGCCGCGTG GATGGTGCCAGCTGTGTAGACTGGCAATCCACGTGCTCACGCTCACGCGT GCCTCGTTCACGCCACAAAATCTCTACGCGGGCGTTCGAGCAGGCGTTCA CGGGCGAGAGCGCGGGGACAGGAGCCGGCGCGGAGAGAGACGGACAAGCC GAGCAGGCTCGCCCCGGGGTCGGTCCAATAGTGGCGGCGGGGGGGTGCGC AGGCGTCATGTACACCGCCGTTACTCACCCGATCGATACCGTGAAGTCGT TGCTCCAGACCGACTCGATGAAGGCTCCGAGGTATCGAGGCTTCTTGGAC GGCTGGCGACAAGTGTTGGCGCCAAGGAGCGGGGGCAGCGGCGGCCGGAA GGGTTTCCTAGGGCTTTACAGGGGGCTATCGCCGGCGATAGCTCGGGCGT TTGTGGGGAACTCGATCTTGTTTTTGACGTACGAGAATGTGCTAGACGCG TTGGGGCGATGACGGCGACACCAGCGCTCACAGCGACCGCTGCTCTCAGT GGTGATGGCATTACAGTGGCCCGATCTCTCCTCGAACGTGTGATGGTACT CTGGGAGGCACGCTCAGCACATGGATAGGCTATAGGCGATGATCCCGTTG CTGTGGGTTGAGCGCAGGAAATAGTGTTGCTTATCCGGCAGAGAACTCCA TATTGACGTAGTGCTGCCAGCAGAAAGAGAGGGCTATTGCGGCTGGTGCT GCTGCGCTACTCCATGGTGGATCGTGTGTTTGGCGACGCGTGCTGCGTGT CACGAGGCTGGGCGAAGTTTACCGTACCATGTGGTTTCGACACACATGTG AGAAAAGCGTGCCACGACTGTAGTCGGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9951:1509..4336-

>mRNA_H-canaliculatus_M_contigs9951.2.1 ID=mRNA_H-canaliculatus_M_contigs9951.2.1|Name=mRNA_H-canaliculatus_M_contigs9951.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=537bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9951:1509..4336- (Hapterophycus canaliculatus Oshoro7m male)
ATGCAGGCATGTTCCCCCGCGGGCGTGACGGTGTGGTCCACGGGCCTCCA
AATTTACCGCCAGCACGGGCTCTTTAATGGCTGCTACAGAGGGTTTTCGT
CGATGCTCCTCAAAGAGGGCCTCGGCAACACCGTCTACTTCGGCTCGTAC
GAGATCTGCAAGCAGCAGGCGTTCACGGGCGAGAGCGCGGGGACAGGAGC
CGGCGCGGAGAGAGACGGACAAGCCGAGCAGGCTCGCCCCGGGGTCGGTC
CAATAGTGGCGGCGGGGGGGTGCGCAGGCGTCATGTACACCGCCGTTACT
CACCCGATCGATACCGTGAAGTCGTTGCTCCAGACCGACTCGATGAAGGC
TCCGAGGTATCGAGGCTTCTTGGACGGCTGGCGACAAGTGTTGGCGCCAA
GGAGCGGGGGCAGCGGCGGCCGGAAGGGTTTCCTAGGGCTTTACAGGGGG
CTATCGCCGGCGATAGCTCGGGCGTTTGTGGGGAACTCGATCTTGTTTTT
GACGTACGAGAATGTGCTAGACGCGTTGGGGCGATGA
back to top