mRNA_H-canaliculatus_M_contigs9947.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9947.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9947.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9947.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX98_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.390e-11
Identity = 32/54 (59.26%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 KDPMFSECIVFPIRDGGMSTVVGSGEDTDIRLAGGDILPRHAVIKLEPGNAALI 162
            KD +FSECI FPIR  G  TVVGSGE+ DIRL G D+LP HA I L     A++
Sbjct:  525 KDLLFSECISFPIRKEGAPTVVGSGEEADIRLDGDDVLPHHATIVLRTDGTAVL 578
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BLAST of mRNA_H-canaliculatus_M_contigs9947.1.1 vs.
Match: Kinesin (motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3M1_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 4.850e-9
Identity = 29/57 (50.88%), Postives = 36/57 (63.16%), Query Frame = 1 
Query:    1 KDPMFSECIVFPIRDGGMSTVVGSGEDTDIRLAGGDILPRHAVIKLEPGNAALIVAN 171
            +D +FSECI FPI   G  T+VGSGE+ DIRL G D+ P HA I L     A++ A 
Sbjct:  677 QDLLFSECISFPICKEGAPTLVGSGEEADIRLDGDDVRPHHATIVLRSDGTAMLSAT 733
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9947.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.390e-1159.26protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Kinesin4.850e-950.88motor domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9947contigH-canaliculatus_M_contigs9947:1517..1699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G3M1
PFAMsKinesin,Kinesin_assoc,Pex24p
Model size183
Max annot lvl2759|Eukaryota
KEGG koko:K17916
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005871,GO:0005875,GO:0005938,GO:0006928,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031097,GO:0032153,GO:0032155,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0071341,GO:0071944,GO:0099568,GO:0099738
Exons1
Evalue3.34e-09
EggNOG OGsCOG5059@1|root,KOG0241@2759|Eukaryota
Descriptionmicrotubule motor activity
Cds size174
COG categoryZ
BRITEko00000,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854235.831264-UTR-H-canaliculatus_M_contigs9947:1516..15251696854235.831264-UTR-H-canaliculatus_M_contigs9947:1516..1525Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs9947 1517..1525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854235.845428-CDS-H-canaliculatus_M_contigs9947:1525..16991696854235.845428-CDS-H-canaliculatus_M_contigs9947:1525..1699Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9947 1526..1699 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9947.1.1prot_H-canaliculatus_M_contigs9947.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9947 1526..1699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9947.1.1

>prot_H-canaliculatus_M_contigs9947.1.1 ID=prot_H-canaliculatus_M_contigs9947.1.1|Name=mRNA_H-canaliculatus_M_contigs9947.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=58bp
MFSECIVFPIRDGGMSTVVGSGEDTDIRLAGGDILPRHAVIKLEPGNAAL
IVANTAV*
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mRNA from alignment at H-canaliculatus_M_contigs9947:1517..1699+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9947.1.1 ID=mRNA_H-canaliculatus_M_contigs9947.1.1|Name=mRNA_H-canaliculatus_M_contigs9947.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=183bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9947:1517..1699+ (Hapterophycus canaliculatus Oshoro7m male)
AAGGACCCCATGTTTTCTGAGTGCATTGTCTTTCCAATCCGAGATGGAGG
CATGTCTACGGTGGTGGGAAGCGGGGAGGATACTGACATTCGATTGGCTG
GAGGCGACATTCTGCCGCGGCACGCTGTAATTAAGCTTGAACCAGGTAAT
GCTGCCCTTATTGTCGCCAATACGGCAGTTTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9947:1517..1699+

>mRNA_H-canaliculatus_M_contigs9947.1.1 ID=mRNA_H-canaliculatus_M_contigs9947.1.1|Name=mRNA_H-canaliculatus_M_contigs9947.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=174bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9947:1517..1699+ (Hapterophycus canaliculatus Oshoro7m male)
ATGTTTTCTGAGTGCATTGTCTTTCCAATCCGAGATGGAGGCATGTCTAC
GGTGGTGGGAAGCGGGGAGGATACTGACATTCGATTGGCTGGAGGCGACA
TTCTGCCGCGGCACGCTGTAATTAAGCTTGAACCAGGTAATGCTGCCCTT
ATTGTCGCCAATACGGCAGTTTAA
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