mRNA_H-canaliculatus_M_contigs9943.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9943.1.1 vs.
Match: Myb-like (DNA-binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS2_ECTSI) HSP 1 Score: 513 bits (1322), Expect = 4.020e-174 Identity = 254/285 (89.12%), Postives = 264/285 (92.63%), Query Frame = 1
Query: 1 TQPEALSQLDTSQSDLMVLDADLWIVRERGDHCSSNECIYKDKASGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIRILHKKTPAEAVLNEGNVEPYLPHEWTEQEANVLAHLVGMYGATNWGIIAAGVATKSETQCMLHWRYALNGNATVKGTGTWQSVEDERMLSLVQIFGQRWSTVAEHMPGRLAKQCRERYLNNLDPELRRGAWSRD-----------------EDEKLLQLRGQQNKSFAKIAEQIEGRSYNDVKNRWSQISRQIAALK 804
++PEALSQLDTSQSDLMVLDADLWIVRERG+HCSSNECIYKDK +GISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIR LHKKTPAEAVLNEGNVEPYLP EWTEQEA+VLAHLVGMYG TNWGII+AGVATK+ETQCMLHWR+ALNGNATVKGTGTWQSVEDERMLSLVQIFGQRWSTVAEHMPGRLAKQCRERYLNNLDPELRRGAWSR+ EDEKLLQLRGQQNKSFAKIAEQI+GRSYNDVKNRWSQISRQIAALK
Sbjct: 548 SKPEALSQLDTSQSDLMVLDADLWIVRERGEHCSSNECIYKDKTTGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIRTLHKKTPAEAVLNEGNVEPYLPQEWTEQEASVLAHLVGMYGPTNWGIISAGVATKTETQCMLHWRFALNGNATVKGTGTWQSVEDERMLSLVQIFGQRWSTVAEHMPGRLAKQCRERYLNNLDPELRRGAWSREARNKKQRVLCAYVGKGLEDEKLLQLRGQQNKSFAKIAEQIDGRSYNDVKNRWSQISRQIAALK 832
BLAST of mRNA_H-canaliculatus_M_contigs9943.1.1 vs.
Match: MYB (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY2_9PHAE) HSP 1 Score: 504 bits (1297), Expect = 5.720e-169 Identity = 243/257 (94.55%), Postives = 252/257 (98.05%), Query Frame = 1
Query: 34 SQSDLMVLDADLWIVRERGDHCSSNECIYKDKASGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIRILHKKTPAEAVLNEGNVEPYLPHEWTEQEANVLAHLVGMYGATNWGIIAAGVATKSETQCMLHWRYALNGNATVKGTGTWQSVEDERMLSLVQIFGQRWSTVAEHMPGRLAKQCRERYLNNLDPELRRGAWSRDEDEKLLQLRGQQNKSFAKIAEQIEGRSYNDVKNRWSQISRQIAALK 804
S+SDLMVLDADLWIVRERG+HCSSNECIYKDK +GISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIR LHKKTPAEAVLNEGNVEPYLP EWTEQEA+VLAHLVGMYG TNWGII+AGV TK+ETQCMLHWR+ALNGNATVKGTGTWQSVEDERMLSLVQIFGQRWSTVAEHMPGRLAKQCRERYLNNLDPELRRGAWSR+EDEKLLQLRGQQNKSFAKIAEQI+GRSYNDVKNRWSQISRQIAALK
Sbjct: 545 SKSDLMVLDADLWIVRERGEHCSSNECIYKDKTTGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIRTLHKKTPAEAVLNEGNVEPYLPQEWTEQEASVLAHLVGMYGPTNWGIISAGVGTKTETQCMLHWRFALNGNATVKGTGTWQSVEDERMLSLVQIFGQRWSTVAEHMPGRLAKQCRERYLNNLDPELRRGAWSREEDEKLLQLRGQQNKSFAKIAEQIDGRSYNDVKNRWSQISRQIAALK 801
BLAST of mRNA_H-canaliculatus_M_contigs9943.1.1 vs.
Match: MYB (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ17_9PHAE) HSP 1 Score: 229 bits (583), Expect = 1.070e-68 Identity = 120/254 (47.24%), Postives = 157/254 (61.81%), Query Frame = 1
Query: 55 LDADLWIVRERGDHCSSNECIYKDKASGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIRILHKKTPAEAVLNEGN-------VEPYLPHEWTEQEANVLAHLVGMYGAT---NWGIIAAGVATKSETQCMLHWRYALNGNATVKGTGTWQSVEDERMLSLVQIF-----GQRWSTVAEHMPGRLAKQCRERYLNNLDPELRRGA-WSRDEDEKLLQLRGQQNKSFAKIAEQIEGRSYNDVKNR 768
LD DLW+V E+G C+S +C Y+D A+ I+SRRHYH+ C H H GG K GM FHHHQLEK+QKHQR+H R K P + E + VE Y P +W ++E L LV A W IA TK+ QC+LHWR+ LN N ++G GTW + EDER+ L +F G RW+ +AE MPGR AKQCRERY N++DP +++ W+ +ED ++QL + + FAKIA I GR Y+DVKNR
Sbjct: 210 LDKDLWVVVEKGSVCTSRDCTYRD-AARIASRRHYHSNCTHTHNGGEKKGMAFHHHQLEKVQKHQRSHKREATKSAPYKRTTPEDHQAMEGAGVEGYRPTDWNQEETRKLDELVNQLVAPVTHAWPSIARYFPTKTGIQCLLHWRFTLNDNGIIRGNGTWGAEEDERLRKLAPVFSSPSTGPRWAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 462
BLAST of mRNA_H-canaliculatus_M_contigs9943.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH85_ECTSI) HSP 1 Score: 230 bits (587), Expect = 1.700e-67 Identity = 124/271 (45.76%), Postives = 165/271 (60.89%), Query Frame = 1
Query: 55 LDADLWIVRERGDHCSSNECIYKDKASGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIRILHKKTPAEAVLNEGN-------VEPYLPHEWTEQEANVLAHLVGMYGAT---NWGIIAAGVATKSETQCMLHWRYALNGNATVKGTGTWQSVEDERMLSLVQIF-----GQRWSTVAEHMPGRLAKQCRERYLNNLDPELRRGA-WSRDEDEKLLQLRGQQNKSFAKIAEQIEGRSYNDVKNRWSQI--SRQIAALKVRS 813
LD DLW+V E+G C+S +C Y+D A+ I+SRRHYH+ C H H GG K GM FHHHQLEK+QKHQR+H R K P + E + VE Y P +W ++E L LV A W IA TK+ QC+LHWR+ LN N ++G GTW + EDER+ L +F G RW+ +AE MPGR AKQCRERY N++DP +++ W+ +ED ++QL + + FAKIA I GR Y+DVKNR++ + RQ+A S
Sbjct: 339 LDKDLWVVVEKGSVCTSRDCTYRD-AARIASRRHYHSNCTHTHNGGEKKGMAFHHHQLEKVQKHQRSHKREATKSAPYKRTTPEDHQAMEGAGVEGYRPTDWNQEETRKLDELVNQLVAPVTHAWPSIARYFPTKTGIQCLLHWRFTLNDNGIIRGNGTWGAEEDERLRKLAPVFSSPSTGPRWAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNRFNLLVKRRQVAVKAAES 608
BLAST of mRNA_H-canaliculatus_M_contigs9943.1.1 vs.
Match: Putative (c-myb-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ9_ECTSI) HSP 1 Score: 208 bits (530), Expect = 7.170e-61 Identity = 113/281 (40.21%), Postives = 158/281 (56.23%), Query Frame = 1
Query: 52 VLDADLWIVRERGDHCSSNECIYKDKASGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIRILHKKTPAEAV-----------------------------------LNEGNVEPYLPHEWTEQEANVLAHLVGMYGATNWGIIAAGVATKSETQCMLHWRYALNGNATVKGTGTWQSVEDERMLSLVQIFGQRWSTVAEHMPGRLAKQCRERYLNNLDPELRRGA-WSRDEDEKLLQLRGQQNKSFAKIAEQIEGRSYNDVKNRWSQISR 786
+LD LW V ER C++ +C Y+ + + RRHYHA C+H H+ G + GM F HHQLEK+QKHQRAH + T ++ + + NVE + P +WT + L LV G W IA + K+ T CMLHWR +N + VKG+GTW + EDER+ LV++ G +WS +A H+PGR+AKQCRERYLN+LDP LR+ W+ DE+ L++L + +A+I Q+ GRSYNDV+NR++ I R
Sbjct: 115 MLDPKLWTVVERRAVCTAKQCAYRSEEDHRARRRHYHALCNHVHQNGERKGMRFQHHQLEKVQKHQRAHQVSAKQNTQRSSIGSSAAKPRSPTTVAAAPRNKRVAAATSGQKEQTRAIKDANVEAHSPKDWTPELTKRLRDLVDELGP-KWSNIADKMPGKTATACMLHWRVGVNPDHMVKGSGTWTAEEDERLSKLVEVVGMKWSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVQNRFNLIQR 394
BLAST of mRNA_H-canaliculatus_M_contigs9943.1.1 vs.
Match: MYB (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK3_9PHAE) HSP 1 Score: 213 bits (541), Expect = 4.440e-59 Identity = 115/276 (41.67%), Postives = 157/276 (56.88%), Query Frame = 1
Query: 52 VLDADLWIVRERGDHCSSNECIYKDKASGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIRILHKKTPAEAV------------------------------LNEGNVEPYLPHEWTEQEANVLAHLVGMYGATNWGIIAAGVATKSETQCMLHWRYALNGNATVKGTGTWQSVEDERMLSLVQIFGQRWSTVAEHMPGRLAKQCRERYLNNLDPELRRGA-WSRDEDEKLLQLRGQQNKSFAKIAEQIEGRSYNDVKNRWSQISR 786
+LD LW V ER C++ +C Y+ + + RRHYHA C+H H+ G + GM F HHQLEK+QKHQRAH + A + + NVE + P +WT + L LV G W IA + K+ T CMLHWR +N N VKG+GTW + EDER+ LV++ G +WS +A+H+PGR+AKQCRERYLN+LDP LR+ W+ DE+ L++L + +A+I Q+ GRSYNDVKNR++ I R
Sbjct: 858 MLDPKLWTVVERRAVCTAKQCAYRSEEDHRARRRHYHALCNHVHQNGERKGMRFQHHQLEKVQKHQRAHQNTQTSSIGSSAAKPRSPTTVATAPRNKRVAAASNGQKEQTRAIKDANVEAHSPKDWTPELTKRLRDLVDELGP-KWSNIADKMPGKTATACMLHWRVGVNPNHMVKGSGTWTAEEDERLSKLVEVVGMKWSDLAKHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQR 1132
BLAST of mRNA_H-canaliculatus_M_contigs9943.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQW6_9STRA) HSP 1 Score: 186 bits (473), Expect = 3.450e-54 Identity = 104/239 (43.51%), Postives = 134/239 (56.07%), Query Frame = 1
Query: 97 CSSNECIYKDKASGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIRIL--------HKKTPAEAVLNEGNVEPYLPHEWTEQEANVLAHLV-GMYG--ATNWGIIAAGVA------TKSETQCMLHWRYALNGNATVKGTGTWQSVEDERMLSLVQIFGQRWSTVAEHMPGRLAKQCRERYLNNLDPELRRGAWSRDEDEKLLQLRGQQNKSFAKIAEQIEGRSYNDVK 762
C + C +D AS ++ RRHYHA C+HRH GPK GM FHHHQLEKI+KHQ AH H A LN +E + P W + L LV G G ++ WG +A T S QC+LHWR +N V G TW VED R+ SLV +FG +WS VA+ +PGR KQCRER+LN +DP R AW+ +EDE LL++ + FA+ A+ RSYN+V+
Sbjct: 18 CHAEMCTLRDDASLVARRRHYHARCEHRHSTGPKTGMRFHHHQLEKIRKHQSAHAAEASRDRGGAPHLDPSMMAELNSHGIELHNPEAWPPEATRHLDTLVRGPVGRPSSAWGEFPRALAAALPGFTVSPQQCLLHWRLVINNGGAVTGVRTWSDVEDARLNSLVNMFGTKWSAVAQLLPGREPKQCRERFLNVVDPSKTRKAWTPEEDELLLRVHDRVRNQFARTAKYFSDRSYNEVR 256
BLAST of mRNA_H-canaliculatus_M_contigs9943.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC17_9STRA) HSP 1 Score: 184 bits (468), Expect = 1.460e-53 Identity = 111/277 (40.07%), Postives = 143/277 (51.62%), Query Frame = 1
Query: 55 LDADLWIVRERGDHCSSNECIYKDKASGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIRILHKKTPAEAVLNEGNVEPYLPHE--------------WTEQEANVLAHLV----------GMYGATNWGIIAAGVATK--------SETQCMLHWRYALNGNATVKGTGTWQSVEDERMLSLVQIFGQRWSTVAEHMPGRLAKQCRERYLNNLDPEL-RRGAWSRDEDEKLLQLRGQQNKSFAKIAEQIEGRSYNDVKNRWSQISR 786
+D LW+ GD C + +C + A+ +++RRHYHA CDHRH G K GM FHHHQLEKI+KHQR H R + E N + P E W+ + L LV G G W +AA +A + S QCML WR +N ATV G GTW ED+R+ LV F Q WS+VA +MPGR KQCRER+ N ++P L R G W+ +ED L + Q FA A + G SYNDVKNR++ + R
Sbjct: 1 IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHSYNDVKNRFNTLQR 277
BLAST of mRNA_H-canaliculatus_M_contigs9943.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA42_9STRA) HSP 1 Score: 155 bits (393), Expect = 4.820e-43 Identity = 92/221 (41.63%), Postives = 118/221 (53.39%), Query Frame = 1
Query: 97 CSSNECIYKDKASGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIR--ILHKKTPA--------------EAVLNEGNVEPYLPHEWTEQEANVLAHLVGMY------GATNWGIIAAGVATK--SETQCMLHWRYALNGNATVKGTGTWQSVEDERMLSLVQIFGQRWSTVAEHMPGRLAKQCRERYLNNLDPEL-RRGAWSRDEDEKLL 684
C + +C + + +++RRHYHATC H H G K GM FHHHQLEKI+KHQRAH R ++ PA EA+L G E Y P W+ L LV G W +AA + S +QCMLHWR +NG A + G GTW + ED R+ +L F Q W+T+A MPGR KQCRER+ N +DP +R W EDE L+
Sbjct: 4 CEAQDCTMRAAGTRLATRRHYHATCGHVHASGAKAGMRFHHHQLEKIRKHQRAHKRSSVIALTAPAPDSPYPGGLPVEVAEALLR-GGAELYDPALWSADAGARLGALVEQQHARRGVGRVAWDKVAAAMRAPALSASQCMLHWRDVVNGGAIIMGVGTWCNAEDTRLRALTAHFRQSWATIARFMPGRGPKQCRERFNNVIDPASHKRAPWKPAEDELLM 223
BLAST of mRNA_H-canaliculatus_M_contigs9943.1.1 vs.
Match: Homeodomain-like (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND7_9STRA) HSP 1 Score: 140 bits (354), Expect = 6.160e-38 Identity = 65/118 (55.08%), Postives = 91/118 (77.12%), Query Frame = 1
Query: 439 QCMLHWRYALNGNATVKGTGTWQSVEDERMLSLVQIFGQRWSTVAEHMPGRLAKQCRERYLNNLDPELRRGAWSRDEDEKLLQLRGQQNKSFAKIAEQIEGRSYNDVKNRWSQISRQI 792
QC+LHWRYALN + V+G G+W ED R+ +LV + G +W+ VA MPGR+AKQCRERYLN+LDP+L+RG W+ +E++ LL+L QN+ +A+I Q+ GRSYNDVKNR++ I R++
Sbjct: 2 QCLLHWRYALNEDQQVRGIGSWSVEEDARLKALVTVHGCKWALVARSMPGRVAKQCRERYLNHLDPKLQRGPWTPEEEQVLLRLCEGQNRQWAEICRQLPGRSYNDVKNRYNLIQRRL 119 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9943.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs9943.1.1 >prot_H-canaliculatus_M_contigs9943.1.1 ID=prot_H-canaliculatus_M_contigs9943.1.1|Name=mRNA_H-canaliculatus_M_contigs9943.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=272bp TQPEALSQLDTSQSDLMVLDADLWIVRERGDHCSSNECIYKDKASGISSRback to top mRNA from alignment at H-canaliculatus_M_contigs9943:24..4320+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs9943.1.1 ID=mRNA_H-canaliculatus_M_contigs9943.1.1|Name=mRNA_H-canaliculatus_M_contigs9943.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4297bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9943:24..4320+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9943:24..4320+ >mRNA_H-canaliculatus_M_contigs9943.1.1 ID=mRNA_H-canaliculatus_M_contigs9943.1.1|Name=mRNA_H-canaliculatus_M_contigs9943.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=816bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9943:24..4320+ (Hapterophycus canaliculatus Oshoro7m male)back to top |