mRNA_H-canaliculatus_M_contigs9931.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9931.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9931.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9931.1.1 vs.
Match: Dynein (heavy chain dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN02_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 1.950e-52
Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:    1 RSLKMPPEPIADVLGAVLMLLGIRDTSWLSMKKFLGNRGVKEDILNFDAHRIDPQLRAKVTKLLNQKSASFEHANIYRVSVAAAPLATWVKANIK 285
            RSLKMPPEPIADVLGAVLMLLGIRDTSWLSMKKFLGNRGVKEDILNFDA RIDPQLRAKVTKLL QKSASFEHANIYRVSVAAAPLATWVKANIK
Sbjct: 2533 RSLKMPPEPIADVLGAVLMLLGIRDTSWLSMKKFLGNRGVKEDILNFDARRIDPQLRAKVTKLLTQKSASFEHANIYRVSVAAAPLATWVKANIK 2627
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BLAST of mRNA_H-canaliculatus_M_contigs9931.1.1 vs.
Match: Dynein (heavy chain n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XEG2_9STRA)

HSP 1 Score: 155 bits (393), Expect = 4.620e-42
Identity = 75/95 (78.95%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    1 RSLKMPPEPIADVLGAVLMLLGIRDTSWLSMKKFLGNRGVKEDILNFDAHRIDPQLRAKVTKLLNQKSASFEHANIYRVSVAAAPLATWVKANIK 285
            RSLKMPPEPI DVL AVLMLLGI+DTSW SMKKFLGNRGVKEDILN+DAHRI P++   VTKL+  K++SF+H  IYRVSVAAAPLATWVKAN+K
Sbjct:   16 RSLKMPPEPIHDVLSAVLMLLGIQDTSWNSMKKFLGNRGVKEDILNYDAHRITPEISKAVTKLVKSKTSSFDHETIYRVSVAAAPLATWVKANLK 110
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BLAST of mRNA_H-canaliculatus_M_contigs9931.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DB10_PHYNI)

HSP 1 Score: 155 bits (393), Expect = 4.670e-42
Identity = 75/95 (78.95%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    1 RSLKMPPEPIADVLGAVLMLLGIRDTSWLSMKKFLGNRGVKEDILNFDAHRIDPQLRAKVTKLLNQKSASFEHANIYRVSVAAAPLATWVKANIK 285
            RSLKMPPEPI DVL AVLMLLGI+DTSW SMKKFLGNRGVKEDILN+DAHRI P++   VTKL+  K++SF+H  IYRVSVAAAPLATWVKAN+K
Sbjct: 1692 RSLKMPPEPIHDVLSAVLMLLGIQDTSWNSMKKFLGNRGVKEDILNYDAHRITPEISKAVTKLVKSKTSSFDHETIYRVSVAAAPLATWVKANLK 1786
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BLAST of mRNA_H-canaliculatus_M_contigs9931.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MA63_9STRA)

HSP 1 Score: 155 bits (393), Expect = 4.680e-42
Identity = 75/95 (78.95%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    1 RSLKMPPEPIADVLGAVLMLLGIRDTSWLSMKKFLGNRGVKEDILNFDAHRIDPQLRAKVTKLLNQKSASFEHANIYRVSVAAAPLATWVKANIK 285
            RSLKMPPEPI DVL AVLMLLGI+DTSW SMKKFLGNRGVKEDILN+DAHRI P++   VTKL+  K++SF+H  IYRVSVAAAPLATWVKAN+K
Sbjct: 1331 RSLKMPPEPIHDVLSAVLMLLGIQDTSWNSMKKFLGNRGVKEDILNYDAHRITPEISKAVTKLVKSKTSSFDHETIYRVSVAAAPLATWVKANLK 1425
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BLAST of mRNA_H-canaliculatus_M_contigs9931.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HBY2_PHYRM)

HSP 1 Score: 155 bits (393), Expect = 4.690e-42
Identity = 75/95 (78.95%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    1 RSLKMPPEPIADVLGAVLMLLGIRDTSWLSMKKFLGNRGVKEDILNFDAHRIDPQLRAKVTKLLNQKSASFEHANIYRVSVAAAPLATWVKANIK 285
            RSLKMPPEPI DVL AVLMLLGI+DTSW SMKKFLGNRGVKEDILN+DAHRI P++   VTKL+  K++SF+H  IYRVSVAAAPLATWVKAN+K
Sbjct: 3026 RSLKMPPEPIHDVLSAVLMLLGIQDTSWNSMKKFLGNRGVKEDILNYDAHRITPEISKAVTKLVKSKTSSFDHETIYRVSVAAAPLATWVKANLK 3120
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BLAST of mRNA_H-canaliculatus_M_contigs9931.1.1 vs.
Match: Dynein (heavy chain n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WXS6_9STRA)

HSP 1 Score: 155 bits (393), Expect = 4.690e-42
Identity = 75/95 (78.95%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    1 RSLKMPPEPIADVLGAVLMLLGIRDTSWLSMKKFLGNRGVKEDILNFDAHRIDPQLRAKVTKLLNQKSASFEHANIYRVSVAAAPLATWVKANIK 285
            RSLKMPPEPI DVL AVLMLLGI+DTSW SMKKFLGNRGVKEDILN+DAHRI P++   VTKL+  K++SF+H  IYRVSVAAAPLATWVKAN+K
Sbjct: 2396 RSLKMPPEPIHDVLSAVLMLLGIQDTSWNSMKKFLGNRGVKEDILNYDAHRITPEISKAVTKLVKSKTSSFDHETIYRVSVAAAPLATWVKANLK 2490
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BLAST of mRNA_H-canaliculatus_M_contigs9931.1.1 vs.
Match: Dynein (heavy chain n=9 Tax=Phytophthora TaxID=4783 RepID=D0NN79_PHYIT)

HSP 1 Score: 155 bits (393), Expect = 4.700e-42
Identity = 75/95 (78.95%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    1 RSLKMPPEPIADVLGAVLMLLGIRDTSWLSMKKFLGNRGVKEDILNFDAHRIDPQLRAKVTKLLNQKSASFEHANIYRVSVAAAPLATWVKANIK 285
            RSLKMPPEPI DVL AVLMLLGI+DTSW SMKKFLGNRGVKEDILN+DAHRI P++   VTKL+  K++SF+H  IYRVSVAAAPLATWVKAN+K
Sbjct: 3055 RSLKMPPEPIHDVLSAVLMLLGIQDTSWNSMKKFLGNRGVKEDILNYDAHRITPEISKAVTKLVKSKTSSFDHETIYRVSVAAAPLATWVKANLK 3149
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BLAST of mRNA_H-canaliculatus_M_contigs9931.1.1 vs.
Match: Cytoplasmic (dynein 2 heavy chain 1 n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S636_9STRA)

HSP 1 Score: 155 bits (393), Expect = 4.700e-42
Identity = 75/95 (78.95%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    1 RSLKMPPEPIADVLGAVLMLLGIRDTSWLSMKKFLGNRGVKEDILNFDAHRIDPQLRAKVTKLLNQKSASFEHANIYRVSVAAAPLATWVKANIK 285
            RSLKMPPEPI DVL AVLMLLGI+DTSW SMKKFLGNRGVKEDILN+DAHRI P++   VTKL+  K++SF+H  IYRVSVAAAPLATWVKAN+K
Sbjct: 3083 RSLKMPPEPIHDVLSAVLMLLGIQDTSWNSMKKFLGNRGVKEDILNYDAHRITPEISKAVTKLVKSKTSSFDHETIYRVSVAAAPLATWVKANLK 3177
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BLAST of mRNA_H-canaliculatus_M_contigs9931.1.1 vs.
Match: Uncharacterized (protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A3F2RUL8_9STRA)

HSP 1 Score: 155 bits (393), Expect = 4.700e-42
Identity = 75/95 (78.95%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    1 RSLKMPPEPIADVLGAVLMLLGIRDTSWLSMKKFLGNRGVKEDILNFDAHRIDPQLRAKVTKLLNQKSASFEHANIYRVSVAAAPLATWVKANIK 285
            RSLKMPPEPI DVL AVLMLLGI+DTSW SMKKFLGNRGVKEDILN+DAHRI P++   VTKL+  K++SF+H  IYRVSVAAAPLATWVKAN+K
Sbjct: 3111 RSLKMPPEPIHDVLSAVLMLLGIQDTSWNSMKKFLGNRGVKEDILNYDAHRITPEISKAVTKLVKSKTSSFDHETIYRVSVAAAPLATWVKANLK 3205
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9931.1.1 vs.
Match: Dynein (heavy chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJ37_PLAHL)

HSP 1 Score: 155 bits (391), Expect = 8.750e-42
Identity = 75/95 (78.95%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:    1 RSLKMPPEPIADVLGAVLMLLGIRDTSWLSMKKFLGNRGVKEDILNFDAHRIDPQLRAKVTKLLNQKSASFEHANIYRVSVAAAPLATWVKANIK 285
            RSLKMPPEPI DVL AVLMLLGI+DTSW SMKKFLGNRGVKEDILN+DAHRI P++   VTKL+  K++SF+H  IYRVSVAAAPLATWVKAN+K
Sbjct: 3056 RSLKMPPEPIHDVLSAVLMLLGIQDTSWNSMKKFLGNRGVKEDILNYDAHRITPEISKAVTKLVRGKASSFDHETIYRVSVAAAPLATWVKANLK 3150
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9931.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Dynein1.950e-5297.89heavy chain dynein heavy chain n=1 Tax=Ectocarpus ... [more]
Dynein4.620e-4278.95heavy chain n=1 Tax=Phytophthora palmivora var. pa... [more]
Uncharacterized4.670e-4278.95protein n=1 Tax=Phytophthora nicotianae TaxID=4790... [more]
Uncharacterized4.680e-4278.95protein n=1 Tax=Phytophthora aleatoria TaxID=24960... [more]
Uncharacterized4.690e-4278.95protein n=1 Tax=Phytophthora ramorum TaxID=164328 ... [more]
Dynein4.690e-4278.95heavy chain n=1 Tax=Phytophthora megakarya TaxID=4... [more]
Dynein4.700e-4278.95heavy chain n=9 Tax=Phytophthora TaxID=4783 RepID=... [more]
Cytoplasmic4.700e-4278.95dynein 2 heavy chain 1 n=1 Tax=Phytophthora cactor... [more]
Uncharacterized4.700e-4278.95protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A... [more]
Dynein8.750e-4278.95heavy chain n=1 Tax=Plasmopara halstedii TaxID=478... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9931contigH-canaliculatus_M_contigs9931:146..1128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LN02
Preferred nameDYNC2H1
PFAMsAAA_5,AAA_6,AAA_7,AAA_8,AAA_9,DHC_N1,DHC_N2,Dynein_heavy,MT
Model size288
Max annot lvl2759|Eukaryota
KEGG koko:K05636,ko:K10414
KEGG Pathwayko04145,ko04151,ko04510,ko04512,ko04962,ko05132,ko05145,ko05146,ko05165,ko05200,ko05222,map04145,map04151,map04510,map04512,map04962,map05132,map05145,map05146,map05165,map05200,map05222
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0001568,GO:0001578,GO:0001944,GO:0002119,GO:0002164,GO:0003002,GO:0003008,GO:0003341,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005856,GO:0005858,GO:0005868,GO:0005874,GO:0005875,GO:0005929,GO:0005930,GO:0006508,GO:0006807,GO:0006810,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007030,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007507,GO:0007600,GO:0007605,GO:0007610,GO:0007617,GO:0007618,GO:0007619,GO:0007626,GO:0007628,GO:0007635,GO:0007638,GO:0008049,GO:0008104,GO:0008150,GO:0008152,GO:0008344,GO:0008569,GO:0008589,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009799,GO:0009855,GO:0009953,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010256,GO:0010467,GO:0010646,GO:0010647,GO:0010648,GO:0010970,GO:0010996,GO:0012505,GO:0015630,GO:0016043,GO:0016462,GO:0016485,GO:0016545,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017015,GO:0017111,GO:0019098,GO:0019538,GO:0019953,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021953,GO:0022008,GO:0022414,GO:0022607,GO:0022611,GO:0023051,GO:0023056,GO:0023057,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030286,GO:0030326,GO:0030512,GO:0030534,GO:0030705,GO:0030900,GO:0030990,GO:0031223,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0035082,GO:0035107,GO:0035108,GO:0035113,GO:0035721,GO:0035735,GO:0036156,GO:0036159,GO:0040024,GO:0042073,GO:0042221,GO:0042623,GO:0042995,GO:0043053,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044458,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045177,GO:0045184,GO:0045433,GO:0045503,GO:0045505,GO:0045880,GO:0046907,GO:0048065,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048585,GO:0048598,GO:0048609,GO:0048699,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051604,GO:0051641,GO:0051649,GO:0051704,GO:0051959,GO:0055115,GO:0060173,GO:0060179,GO:0060271,GO:0060322,GO:0060976,GO:0061062,GO:0061063,GO:0061065,GO:0061066,GO:0061512,GO:0065003,GO:0065007,GO:0070286,GO:0070727,GO:0070925,GO:0071704,GO:0071840,GO:0072358,GO:0072359,GO:0072594,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090659,GO:0097014,GO:0097542,GO:0097730,GO:0099080,GO:0099081,GO:0099111,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901564,GO:1902494,GO:1903844,GO:1903845,GO:1905515,GO:1990939,GO:2000026
Exons2
Evalue9.83e-51
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size276
COG categoryZ
BRITEko00000,ko00001,ko03036,ko04516,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854234.7642362-CDS-H-canaliculatus_M_contigs9931:145..2561696854234.7642362-CDS-H-canaliculatus_M_contigs9931:145..256Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9931 146..256 -
1696854234.778039-CDS-H-canaliculatus_M_contigs9931:951..11161696854234.778039-CDS-H-canaliculatus_M_contigs9931:951..1116Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9931 952..1116 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854234.7883406-UTR-H-canaliculatus_M_contigs9931:1116..11281696854234.7883406-UTR-H-canaliculatus_M_contigs9931:1116..1128Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs9931 1117..1128 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9931.1.1prot_H-canaliculatus_M_contigs9931.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9931 146..1116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9931.1.1

>prot_H-canaliculatus_M_contigs9931.1.1 ID=prot_H-canaliculatus_M_contigs9931.1.1|Name=mRNA_H-canaliculatus_M_contigs9931.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=92bp
MPPEPIADVLGAVLMLLGIRDTSWLSMKKFLGNRGVKEDILNFDAHRIDP
QLRAKVTKLLNQKSASFEHANIYRVSVAAAPLATWVKANIK*
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mRNA from alignment at H-canaliculatus_M_contigs9931:146..1128-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9931.1.1 ID=mRNA_H-canaliculatus_M_contigs9931.1.1|Name=mRNA_H-canaliculatus_M_contigs9931.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=983bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9931:146..1128- (Hapterophycus canaliculatus Oshoro7m male)
AGGTCGCTCAAGATGCCGCCAGAGCCAATCGCAGATGTGCTAGGGGCGGT
ATTGATGTTGCTAGGCATTCGCGACACGTCCTGGCTATCCATGAAGAAGT
TCCTTGGAAACCGTGGTGTTAAGGAAGATATCCTCAACTTTGATGCTCAC
CGCATCGACCCCCAGCTTCGCGCGAAGGTGACGGTACGAGCGGGTTTTTG
TAGGATCCAAGCAAGGCTTCATCAGGCTCCGTCGAACGGAGACTCTCCGC
CAAAAGCCGAGCCATTTGGAGATTGACGGTTCCGTGGGTGGGTCTAGCAT
TGTGAGGGGAGATCGAGTCGAGAAGGGACATCGGATCCTGATCGGTCCGG
ACCGGGTCGAACGAGACATCGAAGACTCATAGTTTCCGGCAGTAAAAAGT
GATGGGGGAAGCTCTGAGACGTCCCCAGGCCGCGGTCCCCCAAGAGAACG
ATCTAAAACAGTTTAGAGAAAGTTTCCCCCGGGCGGATAGGGTTCGCGGT
GGTCAAACCTCGACAATGCTGCAAGTTTCAGGATTTCGACGTACAATAAT
TCGCAGGAAATTTGAAGCCTTGATTGAGACAGTCCCTGGCAAAAAAGGGG
CTTAGGTTACTTCCACATGCAAAGCTTGTGCTGCTAACTGAGTCCTTGAG
AAGTTCAACCTGTACGCAAGCGCTTACCTACCGACCTTCGGTTATTACCA
GGAACGCAAGTGCTTGCTGCCAAGCCCACTCGGGGGCACCTCACGAGGAA
AGTATAGCACTGTCGACCCGATCAAGAGAGAGAAGATTCAGGAGATTGAT
CGAAAGTCTGGGATAGAATACGTAATTTCGTGTGGTGTACGTCCCTATGA
AATCGCATTTTTGGACCACCAGGTGACCAAGCTGCTCAACCAGAAATCGG
CCAGCTTTGAGCATGCCAATATCTACCGTGTTAGCGTTGCTGCCGCTCCC
CTGGCAACATGGGTCAAGGCGAACATCAAGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9931:146..1128-

>mRNA_H-canaliculatus_M_contigs9931.1.1 ID=mRNA_H-canaliculatus_M_contigs9931.1.1|Name=mRNA_H-canaliculatus_M_contigs9931.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=276bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9931:146..1128- (Hapterophycus canaliculatus Oshoro7m male)
ATGCCGCCAGAGCCAATCGCAGATGTGCTAGGGGCGGTATTGATGTTGCT
AGGCATTCGCGACACGTCCTGGCTATCCATGAAGAAGTTCCTTGGAAACC
GTGGTGTTAAGGAAGATATCCTCAACTTTGATGCTCACCGCATCGACCCC
CAGCTTCGCGCGAAGGTGACCAAGCTGCTCAACCAGAAATCGGCCAGCTT
TGAGCATGCCAATATCTACCGTGTTAGCGTTGCTGCCGCTCCCCTGGCAA
CATGGGTCAAGGCGAACATCAAGTGA
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