mRNA_H-canaliculatus_M_contigs9897.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs9897.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs9897.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs9897.1.1 vs.
Match: DnaJ (domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC1_ECTSI)

HSP 1 Score: 257 bits (657), Expect = 5.120e-82
Identity = 126/140 (90.00%), Postives = 137/140 (97.86%), Query Frame = 1

Query:   61 KVFRTFLGGGMFEHLIGPLSPRMVPVRDPDYHHQKSKVLAEELERRLEVDLQGNSVWFDQAAWAEALQLRDQSMGREILRTVGYVYKNYAQRSLGKLAPSVLQPEALKGRMKFYSDQAHRVNNFISAVSSTTRLYVHLQT 480
            KVFRTFLGGGMFEHLIGPLSPRMVPVRDPDYHH+KSK LAEELERRLEVD++GNS +F+QAAWAEALQLR+QSMGREILRTVGYVYKNYAQRSLGKLAP+VLQP+AL+GRM+FYSDQAHRVNN +SAVSSTTRLYVHLQT
Sbjct:  248 KVFRTFLGGGMFEHLIGPLSPRMVPVRDPDYHHRKSKSLAEELERRLEVDVRGNSFYFNQAAWAEALQLREQSMGREILRTVGYVYKNYAQRSLGKLAPNVLQPQALRGRMRFYSDQAHRVNNMLSAVSSTTRLYVHLQT 387

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BLAST of mRNA_H-canaliculatus_M_contigs9897.1.1 vs.
Match: J (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE7_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 5.800e-79
Identity = 127/140 (90.71%), Postives = 137/140 (97.86%), Query Frame = 1

Query:   64 VFRTFLGGGMFEHLIGPLSPRMVPVRDPDYHHQKSKVLAEELERRLEVDLQGNSVWFDQAAWAEALQLRDQSMGREILRTVGYVYKNYAQRSLGKLAPSVLQPEALKGRMKFYSDQAHRVNNFISAVSSTTRLYVHLQTR 483
            VFRTFLGGGMFEHLIGPLSPRMVPVRDPDYHH+KSK LAEELERRLEVD+QGNS +F+QAAWAEALQLR+QSMGREILRTVGYVYKNYAQRSLGKLAP+VLQP+AL+GRM+FYSDQAHRVNN +SAVSSTTRLYVHLQTR
Sbjct:  332 VFRTFLGGGMFEHLIGPLSPRMVPVRDPDYHHRKSKSLAEELERRLEVDVQGNSFYFNQAAWAEALQLREQSMGREILRTVGYVYKNYAQRSLGKLAPNVLQPQALRGRMRFYSDQAHRVNNMLSAVSSTTRLYVHLQTR 471

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs9897.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MGS4_9EUKA)

HSP 1 Score: 65.5 bits (158), Expect = 1.860e-9
Identity = 47/133 (35.34%), Postives = 70/133 (52.63%), Query Frame = 1

Query:   67 FRTFLGGGMFEHLIGPLSPRMVPVRDPDY----HHQKSKVLAEELERRLEVDLQGNSVWFDQAAWAEALQLRDQSMGREILRTVGYVYKNYAQRSLGKLAPSVLQPEALKGRMKFYSDQAHRVNNFISAVSST 453
            F    GGGMFE  IG LS  +    DP+       Q++ +LA++L  RLE  + G    F  +A  EA +LR +  G+++L +VG VYK  A+ SLGK          L G     +++AH V + +SA S++
Sbjct:  226 FSLMFGGGMFEPYIGKLSALLEEDSDPEVAFARRKQQTHILADQLAARLEPFMNGYEEAFRISASEEAQKLRGEPFGKQLLSSVGRVYKIRAEASLGKDTWG-----GLPGLFANINEKAHVVKDVVSAFSAS 353

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs9897.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs9897.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
DnaJ	5.120e-82	90.00	domain containing protein n=1 Tax=Ectocarpus silic...	[more]
J	5.800e-79	90.71	domain-containing protein n=1 Tax=Ectocarpus sp. C...	[more]
Hypothetical	1.860e-9	35.34	protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs9897	contig	H-canaliculatus_M_contigs9897:44..2549 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	2880.D8LDC1
PFAMs	ATG_C,DnaJ,DnaJ-X,PRESAN
Model size	483
Max annot lvl	2759\|Eukaryota
Hectar predicted targeting category	other localisation
GOs	GO:0001775,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002521,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0019538,GO:0019941,GO:0023051,GO:0023052,GO:0023057,GO:0030097,GO:0030098,GO:0030154,GO:0030163,GO:0030183,GO:0030433,GO:0030968,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0033554,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036498,GO:0036503,GO:0042113,GO:0042175,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045321,GO:0046649,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051087,GO:0051603,GO:0051716,GO:0051787,GO:0065007,GO:0070013,GO:0070887,GO:0071310,GO:0071704,GO:0080134,GO:0080135,GO:0098827,GO:1900101,GO:1900102,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903573,GO:1903894,GO:1903895,GO:1905897
Exons	3
Evalue	8.4e-83
EggNOG OGs	COG2214@1\|root,KOG0691@2759\|Eukaryota
Description	toxin transport
Cds size	483
COG category	O

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854233.1073303-CDS-H-canaliculatus_M_contigs9897:43..226	1696854233.1073303-CDS-H-canaliculatus_M_contigs9897:43..226	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs9897 44..226 +
1696854233.119744-CDS-H-canaliculatus_M_contigs9897:1104..1197	1696854233.119744-CDS-H-canaliculatus_M_contigs9897:1104..1197	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs9897 1105..1197 +
1696854233.1301808-CDS-H-canaliculatus_M_contigs9897:2342..2549	1696854233.1301808-CDS-H-canaliculatus_M_contigs9897:2342..2549	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs9897 2343..2549 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs9897.1.1	prot_H-canaliculatus_M_contigs9897.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs9897 44..2549 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs9897:44..2549+
coding sequence from alignment at H-canaliculatus_M_contigs9897:44..2549+

protein sequence of mRNA_H-canaliculatus_M_contigs9897.1.1

>prot_H-canaliculatus_M_contigs9897.1.1 ID=prot_H-canaliculatus_M_contigs9897.1.1|Name=mRNA_H-canaliculatus_M_contigs9897.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=161bp
GAGALVRLKTTKKKRDEKKKKVFRTFLGGGMFEHLIGPLSPRMVPVRDPD
YHHQKSKVLAEELERRLEVDLQGNSVWFDQAAWAEALQLRDQSMGREILR
TVGYVYKNYAQRSLGKLAPSVLQPEALKGRMKFYSDQAHRVNNFISAVSS
TTRLYVHLQTR

mRNA from alignment at H-canaliculatus_M_contigs9897:44..2549+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs9897.1.1 ID=mRNA_H-canaliculatus_M_contigs9897.1.1|Name=mRNA_H-canaliculatus_M_contigs9897.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2506bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9897:44..2549+ (Hapterophycus canaliculatus Oshoro7m male)
GGCGCGGGGGCGTTGGTGCGATTGAAAACGACAAAAAAAAAACGCGACGA
AAAAAAAAAAAAGGTGTTCCGGACGTTTCTGGGAGGTGGCATGTTCGAGC
ACCTGATCGGCCCGCTCAGCCCGAGGATGGTTCCCGTTCGGGATCCTGAC
TACCACCATCAGAAGTCCAAGGTCCTGGCGGAGGTGAGGCAACGAAAAGA
CTCGCAGTACGGCGGCGTTGGGTCTGCAACCCTCCCCCGAAACGTTGTCT
CAACTTTTTTTCTGGGTGGTTGAGGGTGCGGCTACGGTTGAAGTTCGTCC
GCATGTAGACGGTAACAAGAGCAACGAGTAGCAGGAGGGCGAGCAAGCAG
GAGAGAAGGTTGGCCATTATTTCGTGGCAGTGTTCCGGCTGCAGGAATGC
ACACTCATGTAGTTAGGAGAGCACGATCGATCTTGCGCCTGATATCGTGT
GAACAGAACGCGTGATGCGTCTTCGCGCAAGCTGTAGTAGCACCGCTCTG
AAGTGTCAAGCGTCTTTGTTGACCGAAAATATGCGGGTTATCCCACCCCG
CCTGGACCGGCTTTCAAAGCTCTATTTTTACACGGCAAGAGTATTGTCAA
CGCCGCAAAAAAGGGTGGCGTTGGAAAGCTCTCGTCGATGGCTGTCAGAC
AACGTTTCGTTTGGCTTTGGTGTCCTCTTCGTGTCTTCGTGACGGAGCAA
TGATCTTTGAAGGTCGGTCCAGGGGGTATGCGATAGCCCGCATGACTACG
GTAGTCGTTTCGGGAACTTTTGGCCTTTAGTGTTGAAAAGGCGTTCTCCT
GTCGTCTTTCCTCGTGGAAACTTGTGTCTCAGAGAGCGGGCGGCCCCTCT
GTAGCATCAAGAACGTTCGAGGATATTTCTCAACGTTTGACGAGGTGGAG
AAAATCGTCTCTAGATGGTCGGATTGGCACGCACCAGGTACACCGCAACA
CCACAGAGGTATCCCAAGCAGGGGTGACGTAGATCATTTCGATTGTGCCA
CTACCGACAGCCAACTGCTGAGCGCCACAGCCGTGTCTCGGTTTGTGCTG
TTGAAATCCAGGAACTGGAACGGAGGCTGGAAGTGGACCTGCAGGGTAAT
TCCGTGTGGTTCGATCAGGCCGCTTGGGCAGAAGCGTTGCAGCTGAGGGA
CCAGGTGCGTGTTGCTCTCCTCCCCCATTCGTTTTTTTTCCTTCCCAACC
TTTTCCTTCTTTTGCATCCCGCCCGGTCATTATTTTTCCATTTTCTCTTG
TTTCTGTCATTTTCTCACCGAAATGAAGGACGACCGCATCGGCGCGTGTG
TGTTTGAAGGAACTAGAGGCTTGTTGCCACCGAAGAGTTACTATGCACGC
ACGTCGCGGGTCCCCTCGCATTTCATTTCGGGTGCACGGCGGGGTGCCAT
GGGGAAACGAAAGGAGAGGCGGTACGACGGCGACGTACCCTTTCGTCTAC
CCACCCTTTCGGCTACCTATCCGTTCGTCTAAGAACTGGAACGGGATGGC
ACTTTGGCCGTCCGATACCATTTTGGAGTCGTGCAAGCGGCTACTGTACA
TTGCACCGCACAAGGGTCCACCGTTCTTCCGGTCTGTTGCTGCACGACGA
ACGCAGAATCGCCGTTTCAAGCCGCACCCGCATTTTATCTACGTAGGCCT
CTGCTCCATAGGCGCCTTTTTTCCCATTAAGATACACCTTCTTTTTCTCG
ACACTAAACTCAGGATATTAGCGGCCCCGCGGTTGGTAGTTTTTGCCCCA
AACGCCTATGGAGCAGAGGCCTAATTTTATCGCTGAGGGCGTTGGCGTAT
CACCCAGTCCCTTCGTCGGGCACTGCTGTGGGTCCTCTTGTGTTTGGGGC
TGCGAGATTGATGCTGGCTGGCAACGCAAAGTGAAATGAACCCTTGGGAT
TCAAAGCTGCGACTTTCGTATGCTTTGTTTTTCTCCTTTGTCTTTGGTGC
TCGAGCGTTGTTCGGCTGTGCACTGCAAGCGTCTCGCACGACCCGCGGCT
CCTCCGCTTGGCTGCGAGGGCGACCACACGCGAAGACATGAGATCGAAGG
CGTCACGGAAGACTTGATCTCGAAAAACAAGGGCGTGATTTCGTTATTTC
CACCCCTGTCTCCATCCGTCCCTCCGTCCGTCCTTATCTTTCGCACACCA
AACAGACACGCGCCACGTGTGCTACAGCTACCTCATAGGCTGCCTTTCAA
CCCCCGGTCTGCCACTGCTGCTTCTCTCTCTCTGTCCCTCTCTTGCTGTG
CCGGTCTCCGTCCCAACGCCTCATTTCCCGTCGGCATCAATCCCCGCAGT
CCATGGGCCGCGAGATCCTCCGCACCGTGGGCTACGTGTACAAGAACTAT
GCGCAGAGGTCGCTCGGGAAACTGGCGCCGAGCGTGCTGCAGCCGGAGGC
GCTCAAGGGCCGCATGAAGTTCTACTCCGACCAGGCACACCGGGTCAACA
ACTTCATCTCGGCGGTGTCGTCTACGACCCGCCTGTACGTGCACCTGCAG
ACAAGG

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9897:44..2549+

>mRNA_H-canaliculatus_M_contigs9897.1.1 ID=mRNA_H-canaliculatus_M_contigs9897.1.1|Name=mRNA_H-canaliculatus_M_contigs9897.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=483bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9897:44..2549+ (Hapterophycus canaliculatus Oshoro7m male)
GGCGCGGGGGCGTTGGTGCGATTGAAAACGACAAAAAAAAAACGCGACGA
AAAAAAAAAAAAGGTGTTCCGGACGTTTCTGGGAGGTGGCATGTTCGAGC
ACCTGATCGGCCCGCTCAGCCCGAGGATGGTTCCCGTTCGGGATCCTGAC
TACCACCATCAGAAGTCCAAGGTCCTGGCGGAGGAACTGGAACGGAGGCT
GGAAGTGGACCTGCAGGGTAATTCCGTGTGGTTCGATCAGGCCGCTTGGG
CAGAAGCGTTGCAGCTGAGGGACCAGTCCATGGGCCGCGAGATCCTCCGC
ACCGTGGGCTACGTGTACAAGAACTATGCGCAGAGGTCGCTCGGGAAACT
GGCGCCGAGCGTGCTGCAGCCGGAGGCGCTCAAGGGCCGCATGAAGTTCT
ACTCCGACCAGGCACACCGGGTCAACAACTTCATCTCGGCGGTGTCGTCT
ACGACCCGCCTGTACGTGCACCTGCAGACAAGG