mRNA_H-canaliculatus_M_contigs9868.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9868.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9868.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9868.1.1 vs.
Match: 4Fe-4S (ferredoxin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ5_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 8.730e-19
Identity = 42/53 (79.25%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:   10 GLRLLFRVLSTRVGALILTGRAVPFHEQSLAARHALLKRWSVSRVGKLREAFQ 168
            GLR+LFR+LSTR+GA ILTGRAVPFH QSLAARH +LKRWSVSR+  LR+AFQ
Sbjct:  238 GLRVLFRMLSTRLGAFILTGRAVPFHSQSLAARHGVLKRWSVSRIRPLRDAFQ 290
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BLAST of mRNA_H-canaliculatus_M_contigs9868.1.1 vs.
Match: Oxidoreductase (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5T1_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 5.680e-18
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:   10 GLRLLFRVLSTRVGALILTGRAVPFHEQSLAARHALLKRWSVSRVGKLREAFQ 168
            GLR+LFRVLSTR+GA +LTGRAVPF  QSLAARH +LKRWSVSR+  LR+AFQ
Sbjct:  146 GLRVLFRVLSTRLGAFVLTGRAVPFQSQSLAARHGVLKRWSVSRIRPLRDAFQ 198
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BLAST of mRNA_H-canaliculatus_M_contigs9868.1.1 vs.
Match: Long (chain fatty acid oxidase (Fragment) n=1 Tax=Magnaporthiopsis poae (strain ATCC 64411 / 73-15) TaxID=644358 RepID=A0A0H2TWN5_MAGP6)

HSP 1 Score: 52.4 bits (124), Expect = 2.580e-6
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:   19 LLFRVLSTRVGALILTGRAVPFHEQSLAARHALLKRWSVSRVGKLR 156
            LL  VLSTRVGA +LTG   P H Q L  R A+L+RW+VS V  +R
Sbjct:  125 LLLTVLSTRVGAFVLTGNCTPVHLQPLHVREAVLRRWTVSYVPAMR 170
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BLAST of mRNA_H-canaliculatus_M_contigs9868.1.1 vs.
Match: Long-chain-alcohol (oxidase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535N3Q1_9CHLR)

HSP 1 Score: 48.1 bits (113), Expect = 8.230e-5
Identity = 24/49 (48.98%), Postives = 29/49 (59.18%), Query Frame = 1 
Query:   22 LFRVLSTRVGALILTGRAVPFHEQSLAARHALLKRWSVSRVGKLREAFQ 168
            L R+L TR+G  +LTGR  PFH    A R  LL  WS SR+   R+ FQ
Sbjct:   64 LIRLLGTRIGTFLLTGRLEPFHRWDRARRTRLLLAWSTSRLVFRRQLFQ 112
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BLAST of mRNA_H-canaliculatus_M_contigs9868.1.1 vs.
Match: Long-chain-alcohol (oxidase n=1 Tax=Gaeumannomyces tritici (strain R3-111a-1) TaxID=644352 RepID=J3NKJ7_GAET3)

HSP 1 Score: 48.1 bits (113), Expect = 8.270e-5
Identity = 24/45 (53.33%), Postives = 28/45 (62.22%), Query Frame = 1 
Query:   22 LFRVLSTRVGALILTGRAVPFHEQSLAARHALLKRWSVSRVGKLR 156
            L   LSTR GAL LTGR +P H Q L AR A L+RW  S +  +R
Sbjct:  138 LLGALSTRTGALFLTGRCIPLHLQPLHAREAALRRWLASYLPAMR 182
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9868.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
4Fe-4S8.730e-1979.25ferredoxin-type domain-containing protein n=1 Tax=... [more]
Oxidoreductase5.680e-1877.36n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Long2.580e-656.52chain fatty acid oxidase (Fragment) n=1 Tax=Magnap... [more]
Long-chain-alcohol8.230e-548.98oxidase n=1 Tax=Chloroflexi bacterium TaxID=202672... [more]
Long-chain-alcohol8.270e-553.33oxidase n=1 Tax=Gaeumannomyces tritici (strain R3-... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9868contigH-canaliculatus_M_contigs9868:246..431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G5T1
PFAMsGMC_oxred_C,GMC_oxred_N
Model size186
Max annot lvl2759|Eukaryota
KEGG koko:K17756
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0008150,GO:0008152,GO:0016491,GO:0044464,GO:0055114
Exons1
Evalue9.32e-19
EggNOG OGsCOG2303@1|root,2QSD8@2759|Eukaryota
EC1.1.3.20
Descriptionlong-chain-alcohol oxidase activity
Cds size186
COG categoryE
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854231.5673301-CDS-H-canaliculatus_M_contigs9868:245..4311696854231.5673301-CDS-H-canaliculatus_M_contigs9868:245..431Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9868 246..431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9868.1.1prot_H-canaliculatus_M_contigs9868.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9868 246..431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9868.1.1

>prot_H-canaliculatus_M_contigs9868.1.1 ID=prot_H-canaliculatus_M_contigs9868.1.1|Name=mRNA_H-canaliculatus_M_contigs9868.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=62bp
SPPGLRLLFRVLSTRVGALILTGRAVPFHEQSLAARHALLKRWSVSRVGK
LREAFQVCLLLT
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mRNA from alignment at H-canaliculatus_M_contigs9868:246..431-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9868.1.1 ID=mRNA_H-canaliculatus_M_contigs9868.1.1|Name=mRNA_H-canaliculatus_M_contigs9868.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=186bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9868:246..431- (Hapterophycus canaliculatus Oshoro7m male)
TCTCCCCCAGGTCTCCGTCTGCTGTTCCGAGTGCTAAGCACCCGAGTGGG
GGCGCTGATTCTCACGGGGAGGGCGGTCCCTTTTCACGAACAGAGCCTCG
CCGCACGGCATGCTCTACTCAAGAGGTGGTCTGTCTCACGCGTCGGGAAG
CTCAGAGAAGCGTTTCAGGTCTGCCTGTTACTGACT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9868:246..431-

>mRNA_H-canaliculatus_M_contigs9868.1.1 ID=mRNA_H-canaliculatus_M_contigs9868.1.1|Name=mRNA_H-canaliculatus_M_contigs9868.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=186bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9868:246..431- (Hapterophycus canaliculatus Oshoro7m male)
TCTCCCCCAGGTCTCCGTCTGCTGTTCCGAGTGCTAAGCACCCGAGTGGG
GGCGCTGATTCTCACGGGGAGGGCGGTCCCTTTTCACGAACAGAGCCTCG
CCGCACGGCATGCTCTACTCAAGAGGTGGTCTGTCTCACGCGTCGGGAAG
CTCAGAGAAGCGTTTCAGGTCTGCCTGTTACTGACT
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