mRNA_H-canaliculatus_M_contigs9864.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9864.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9864.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9864.1.1 vs.
Match: Serine/threonine-protein (phosphatase (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCU3_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 9.230e-42
Identity = 64/66 (96.97%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 QGVCTIFSAPNYCYRCGNQAAIMEVDETVPKQISEALYDHCNFTQFDPAPRDENWRQSKRVPDYFL 198
            QGVCTIFSAPNYCYRCGNQAAIMEVDETVPKQISEALYDHCNFTQFDPAPR++NWRQSKRVPDYFL
Sbjct:  254 QGVCTIFSAPNYCYRCGNQAAIMEVDETVPKQISEALYDHCNFTQFDPAPREKNWRQSKRVPDYFL 319
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BLAST of mRNA_H-canaliculatus_M_contigs9864.1.1 vs.
Match: Serine/threonine-protein (phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPF4_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.030e-33
Identity = 54/66 (81.82%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 QGVCTIFSAPNYCYRCGNQAAIMEVDETVPKQISEALYDHCNFTQFDPAPRDENWRQSKRVPDYFL 198
            +GVCTIFSAPNYCYRCGNQAAIMEVDE V     +ALYDHC FTQFDPAPRDE WR SKR+PDYFL
Sbjct:  254 RGVCTIFSAPNYCYRCGNQAAIMEVDERVANLSGDALYDHCMFTQFDPAPRDEGWRTSKRIPDYFL 319
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BLAST of mRNA_H-canaliculatus_M_contigs9864.1.1 vs.
Match: SER_THR_PHOSPHATASE (domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K170_FISSO)

HSP 1 Score: 111 bits (278), Expect = 5.340e-29
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 QGVCTIFSAPNYCYRCGNQAAIMEVDETVPKQISEALYDHCNFTQFDPAPRDENWRQSKRVPDYFL 198
            + V T+FSAPNYCYRCGNQAAIMEVD++V +   E+++DHC F+QFDPAPRDE+W +S R PDYFL
Sbjct:  169 RSVVTVFSAPNYCYRCGNQAAIMEVDDSVDQTTKESIHDHCRFSQFDPAPRDESWHKSPRTPDYFL 234
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BLAST of mRNA_H-canaliculatus_M_contigs9864.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5DI01_9STRA)

HSP 1 Score: 109 bits (273), Expect = 7.870e-29
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 QGVCTIFSAPNYCYRCGNQAAIMEVDETVPKQISEALYDHCNFTQFDPAPRDENWRQSKRVPDYFL 198
            + V TIFSAPNYCYRCGNQAAIME+D++V     E ++DHC F+QFDPAPRDE+W +S R PDYFL
Sbjct:  115 KSVVTIFSAPNYCYRCGNQAAIMEIDDSVESCSKETIHDHCRFSQFDPAPRDESWHKSPRTPDYFL 180
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BLAST of mRNA_H-canaliculatus_M_contigs9864.1.1 vs.
Match: Serine/threonine-protein (phosphatase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YUF8_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.170e-27
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    7 VCTIFSAPNYCYRCGNQAAIMEVDETVPKQISEALYDHCNFTQFDPAPRDENWRQSKRVPDYFL 198
            V T+FSAPNYCYRCGNQAAIMEVD+ V +   + ++DHC F+QFDPAPRDENW +S R PDYFL
Sbjct:  255 VVTVFSAPNYCYRCGNQAAIMEVDDFVDQTTKDTVHDHCKFSQFDPAPRDENWHKSTRTPDYFL 318
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BLAST of mRNA_H-canaliculatus_M_contigs9864.1.1 vs.
Match: Serine/threonine-protein (phosphatase n=8 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S2XPU4_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.480e-27
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 QGVCTIFSAPNYCYRCGNQAAIMEVDETVPKQISEALYDHCNFTQFDPAPRDENWRQSKRVPDYFL 198
            + V T+FSAPNYCYRCGNQAAIMEVD+TV +   E ++DHC F+QFDPAPRDE W ++ R PDYFL
Sbjct:  267 RSVVTVFSAPNYCYRCGNQAAIMEVDDTVDQCSKETIHDHCKFSQFDPAPRDETWHKNPRTPDYFL 332
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BLAST of mRNA_H-canaliculatus_M_contigs9864.1.1 vs.
Match: Serine/threonine-protein (phosphatase n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5DI21_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.530e-27
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 QGVCTIFSAPNYCYRCGNQAAIMEVDETVPKQISEALYDHCNFTQFDPAPRDENWRQSKRVPDYFL 198
            + V TIFSAPNYCYRCGNQAAIME+D++V     E ++DHC F+QFDPAPRDE+W +S R PDYFL
Sbjct:  249 KSVVTIFSAPNYCYRCGNQAAIMEIDDSVESCSKETIHDHCRFSQFDPAPRDESWHKSPRTPDYFL 314
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BLAST of mRNA_H-canaliculatus_M_contigs9864.1.1 vs.
Match: Serine/threonine-protein (phosphatase n=5 Tax=Bacillariophycidae TaxID=33850 RepID=A0A7S3LEI7_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.270e-27
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    7 VCTIFSAPNYCYRCGNQAAIMEVDETVPKQISEALYDHCNFTQFDPAPRDENWRQSKRVPDYFL 198
            V T+FSAPNYCYRCGNQAAIMEVD+T+ +   + ++DHC F+QFDPAPRDE+W +S R PDYFL
Sbjct:  254 VVTVFSAPNYCYRCGNQAAIMEVDDTIEQTGRDTIHDHCKFSQFDPAPRDESWHKSPRTPDYFL 317
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BLAST of mRNA_H-canaliculatus_M_contigs9864.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1DZF5_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.410e-27
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 QGVCTIFSAPNYCYRCGNQAAIMEVDETVPKQISEALYDHCNFTQFDPAPRDENWRQSKRVPDYFL 198
            + V T+FSAPNYCYRCGNQ AIMEVD++V     E ++DH  F+QFDPAPRD+NW +S R PDYFL
Sbjct:   74 KSVVTVFSAPNYCYRCGNQGAIMEVDDSVDSCSRETIHDHVQFSQFDPAPRDDNWHKSPRTPDYFL 139
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9864.1.1 vs.
Match: Serine/threonine-protein (phosphatase n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S1CXJ6_CYCTE)

HSP 1 Score: 107 bits (267), Expect = 1.630e-26
Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 QGVCTIFSAPNYCYRCGNQAAIMEVDETVPKQISEALYDHCNFTQFDPAPRDENWRQSKRVPDYFL 198
            + V T+FSAPNYCYRCGNQAAIMEVD++V     + +++HC F+QFDPAPRD+NW +S R PDYFL
Sbjct:  269 RSVVTVFSAPNYCYRCGNQAAIMEVDDSVDSCNKDTIHEHCKFSQFDPAPRDDNWHKSPRTPDYFL 334
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9864.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Serine/threonine-protein9.230e-4296.97phosphatase (Fragment) n=2 Tax=Ectocarpus TaxID=28... [more]
Serine/threonine-protein2.030e-3381.82phosphatase n=1 Tax=Tribonema minus TaxID=303371 R... [more]
SER_THR_PHOSPHATASE5.340e-2968.18domain-containing protein n=1 Tax=Fistulifera sola... [more]
Hypothetical7.870e-2968.18protein n=1 Tax=Corethron hystrix TaxID=216773 Rep... [more]
Serine/threonine-protein1.170e-2770.31phosphatase n=1 Tax=Pseudo-nitzschia multistriata ... [more]
Serine/threonine-protein1.480e-2768.18phosphatase n=8 Tax=Bacillariophyta TaxID=2836 Rep... [more]
Serine/threonine-protein1.530e-2768.18phosphatase n=3 Tax=Corethron hystrix TaxID=216773... [more]
Serine/threonine-protein2.270e-2768.75phosphatase n=5 Tax=Bacillariophycidae TaxID=33850... [more]
Hypothetical2.410e-2765.15protein n=1 Tax=Thalassionema nitzschioides TaxID=... [more]
Serine/threonine-protein1.630e-2665.15phosphatase n=4 Tax=Bacillariophyta TaxID=2836 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9864contigH-canaliculatus_M_contigs9864:270..659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LCU3
PFAMsMetallophos
Model size201
Max annot lvl2759|Eukaryota
KEGG koko:K04382
KEGG Pathwayko03015,ko04013,ko04071,ko04111,ko04113,ko04114,ko04136,ko04138,ko04140,ko04151,ko04152,ko04261,ko04350,ko04390,ko04391,ko04530,ko04728,ko04730,ko05142,ko05160,ko05165,map03015,map04013,map04071,map04111,map04113,map04114,map04136,map04138,map04140,map04151,map04152,map04261,map04350,map04390,map04391,map04530,map04728,map04730,map05142,map05160,map05165
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.51e-42
EggNOG OGsCOG0639@1|root,KOG0371@2759|Eukaryota
EC3.1.3.16
Descriptionphosphoprotein phosphatase activity
Cds size201
COG categoryT
BRITEko00000,ko00001,ko01000,ko01009,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854231.3794136-CDS-H-canaliculatus_M_contigs9864:269..3971696854231.3794136-CDS-H-canaliculatus_M_contigs9864:269..397Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9864 270..397 +
1696854231.3923044-CDS-H-canaliculatus_M_contigs9864:586..6591696854231.3923044-CDS-H-canaliculatus_M_contigs9864:586..659Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9864 587..659 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9864.1.1prot_H-canaliculatus_M_contigs9864.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9864 270..659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9864.1.1

>prot_H-canaliculatus_M_contigs9864.1.1 ID=prot_H-canaliculatus_M_contigs9864.1.1|Name=mRNA_H-canaliculatus_M_contigs9864.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=67bp
QGVCTIFSAPNYCYRCGNQAAIMEVDETVPKQISEALYDHCNFTQFDPAP
RDENWRQSKRVPDYFL*
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mRNA from alignment at H-canaliculatus_M_contigs9864:270..659+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9864.1.1 ID=mRNA_H-canaliculatus_M_contigs9864.1.1|Name=mRNA_H-canaliculatus_M_contigs9864.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=390bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9864:270..659+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGGAGTGTGCACGATCTTCAGCGCGCCCAATTACTGCTACCGCTGCGG
GAACCAGGCGGCAATCATGGAGGTGGATGAGACCGTCCCCAAGCAGATCA
GCGAGGCCCTCTACGACCACTGCAACTTGTGAGACTAGCTGCCGGAAGGG
GTCGCGAGCTCACTTCTAGTCGTCTGCGCCATCGATTTCAAAGTATCTGT
ACGTGTGATTGTCTGTCTTTTTGTGCGCATCTTTTTCTCAAGCAGAACTT
GCCCCTTGCCCTCCACGCCCTTGACACTTCCCCGCTCCCAACGCTCGCCG
CCTCTCTGCCTGCGCAGCACCCAATTTGACCCAGCACCACGCGACGAGAA
CTGGCGTCAGAGCAAACGAGTGCCGGATTATTTCCTCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9864:270..659+

>mRNA_H-canaliculatus_M_contigs9864.1.1 ID=mRNA_H-canaliculatus_M_contigs9864.1.1|Name=mRNA_H-canaliculatus_M_contigs9864.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=201bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9864:270..659+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGGAGTGTGCACGATCTTCAGCGCGCCCAATTACTGCTACCGCTGCGG
GAACCAGGCGGCAATCATGGAGGTGGATGAGACCGTCCCCAAGCAGATCA
GCGAGGCCCTCTACGACCACTGCAACTTCACCCAATTTGACCCAGCACCA
CGCGACGAGAACTGGCGTCAGAGCAAACGAGTGCCGGATTATTTCCTCTG
A
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