mRNA_H-canaliculatus_M_contigs986.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs986.1.1
Unique NamemRNA_H-canaliculatus_M_contigs986.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs986.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW90_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.810e-35
Identity = 73/128 (57.03%), Postives = 85/128 (66.41%), Query Frame = 1 
Query:    1 MGEQSQQQDLWFWRDSCVNLANNSEFKVSYWVEQECKMKTRAIQETVVTTMQTKLNGKTDLDPGEHGMLGVLAGGGGGLE----------------VNVRAAKRAKTETSVSTEQTEMESYFLMKDYR 336
            M E SQQQ LWFWRDSC+N+ANNS++KVSYWVEQECKMKTRA+QETVV+TM TKLNGK  +  G+ G                               VRAAKRAKTE +V TE+TE+ SYFLMKD+R
Sbjct:    1 MEEPSQQQGLWFWRDSCINVANNSDYKVSYWVEQECKMKTRAVQETVVSTMDTKLNGKAKI--GDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAEVRAAKRAKTEKTVCTEKTEV-SYFLMKDHR 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs986.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.810e-3557.03protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs986contigH-canaliculatus_M_contigs986:77..415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size339
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_001760.1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854231.203053-CDS-H-canaliculatus_M_contigs986:76..4151696854231.203053-CDS-H-canaliculatus_M_contigs986:76..415Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs986 77..415 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs986.1.1prot_H-canaliculatus_M_contigs986.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs986 77..415 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs986.1.1

>prot_H-canaliculatus_M_contigs986.1.1 ID=prot_H-canaliculatus_M_contigs986.1.1|Name=mRNA_H-canaliculatus_M_contigs986.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=113bp
MGEQSQQQDLWFWRDSCVNLANNSEFKVSYWVEQECKMKTRAIQETVVTT
MQTKLNGKTDLDPGEHGMLGVLAGGGGGLEVNVRAAKRAKTETSVSTEQT
EMESYFLMKDYR*
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mRNA from alignment at H-canaliculatus_M_contigs986:77..415-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs986.1.1 ID=mRNA_H-canaliculatus_M_contigs986.1.1|Name=mRNA_H-canaliculatus_M_contigs986.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=339bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs986:77..415- (Hapterophycus canaliculatus Oshoro7m male)
ATGGGCGAGCAGTCTCAGCAACAGGATCTGTGGTTTTGGAGGGACTCGTG
CGTGAACTTGGCCAACAATAGCGAGTTCAAGGTGTCGTACTGGGTAGAGC
AGGAGTGCAAGATGAAGACCCGGGCCATTCAAGAGACAGTTGTCACCACG
ATGCAAACCAAGCTCAATGGGAAGACCGACCTAGATCCGGGAGAGCACGG
GATGCTAGGGGTTCTAGCGGGCGGCGGTGGGGGGTTAGAGGTGAACGTTC
GAGCGGCGAAGAGAGCGAAGACGGAAACGTCGGTGTCAACCGAACAGACA
GAGATGGAGTCGTATTTCTTGATGAAGGACTACAGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs986:77..415-

>mRNA_H-canaliculatus_M_contigs986.1.1 ID=mRNA_H-canaliculatus_M_contigs986.1.1|Name=mRNA_H-canaliculatus_M_contigs986.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=339bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs986:77..415- (Hapterophycus canaliculatus Oshoro7m male)
ATGGGCGAGCAGTCTCAGCAACAGGATCTGTGGTTTTGGAGGGACTCGTG
CGTGAACTTGGCCAACAATAGCGAGTTCAAGGTGTCGTACTGGGTAGAGC
AGGAGTGCAAGATGAAGACCCGGGCCATTCAAGAGACAGTTGTCACCACG
ATGCAAACCAAGCTCAATGGGAAGACCGACCTAGATCCGGGAGAGCACGG
GATGCTAGGGGTTCTAGCGGGCGGCGGTGGGGGGTTAGAGGTGAACGTTC
GAGCGGCGAAGAGAGCGAAGACGGAAACGTCGGTGTCAACCGAACAGACA
GAGATGGAGTCGTATTTCTTGATGAAGGACTACAGGTGA
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