mRNA_H-canaliculatus_M_contigs9853.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9853.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9853.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9853.1.1 vs.
Match: COG2350: (Uncharacterized protein conserved in bacteria n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ2_ECTSI)

HSP 1 Score: 410 bits (1054), Expect = 2.360e-139
Identity = 194/242 (80.17%), Postives = 211/242 (87.19%), Query Frame = 1 
Query:    1 QAKRVPLGEGAGDELFRLKNVGASVPEEDRVDDHSDEAMRRLMFDMDPDSEEKGPMYFGDAGMYTDEVDHSKYPEEVRFPQCYLAFCIDRPETADEPKNYVAWGVRKTAHWEHLKWARIAKRTFNDDKDREAGLLWSRSVLSPSKHRIIGNMFCIRSYSKASASSPHACCEGAVRLLEEDPYRKSGLFGTVSLYRYPYNMGGEFNWHLSNFPYVALCMDKKGKSKLRKDKQEAHLEYYERTR 726
            QAK  PLG+G GD+L RLKNV A+VPEEDRVDDHSDEAMRRLMFDMDPDS++KGPMYFGDAGMYTDEV+H KYPEEVRFPQ YLAFC+DR ET DE KNYV WGVR  AHWEH+KWARIAKRTF DD DREAG+LW+RSVLSPSK R+IGNMFCIRSY+K          EGA+RLLEEDPYRKSGLFGTVSLYRYPYNMGG FNWHLSNFPY+ALCMDKKG +KLR+   +AHLEYYERTR
Sbjct:  101 QAKNTPLGDGKGDDLLRLKNVAAAVPEEDRVDDHSDEAMRRLMFDMDPDSKDKGPMYFGDAGMYTDEVNHVKYPEEVRFPQSYLAFCVDREETEDEDKNYVTWGVRAKAHWEHVKWARIAKRTFEDDPDREAGILWNRSVLSPSKCRVIGNMFCIRSYTK----------EGALRLLEEDPYRKSGLFGTVSLYRYPYNMGGGFNWHLSNFPYLALCMDKKGSAKLREKNNDAHLEYYERTR 332
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9853.1.1 vs.
Match: YCII (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNB6_9PHAE)

HSP 1 Score: 362 bits (930), Expect = 5.700e-121
Identity = 175/226 (77.43%), Postives = 190/226 (84.07%), Query Frame = 1 
Query:   97 DHSDEAMRRLMFDMDPDSEEKGPMYFGDAGMYTDEVDHSKYPEEVRFPQCYLAFCIDRPETADEPKNYVAWGVRKTAHWEHLKWARIAKRTFNDDKDREAGLLWSRSVLSPSKHRIIGNMFCIRSYSKASA-------------SSPHACC---EGAVRLLEEDPYRKSGLFGTVSLYRYPYNMGGEFNWHLSNFPYVALCMDKKGKSKLRKDKQEAHLEYYERTR 726
            DHSDEAMRRLMFDMDPDS++KGPMYFGDAGMYTDEV+H KYPEEVRFPQ YLAFC+DR ET DE KNYV WGVR  AHWEH+KWARIAKRTF DD DREAG+LW+RSVLSPSK R+IGNMFCIRSY+KASA              S  A     EGA+RLLEEDPYRKSGLFGTVSLYRYPYNMGG FNWHLSNFPY+ALCMDKKGK+KLR+   +AHLEYYE+TR
Sbjct:   17 DHSDEAMRRLMFDMDPDSKDKGPMYFGDAGMYTDEVNHVKYPEEVRFPQSYLAFCVDREETEDEDKNYVTWGVRAKAHWEHVKWARIAKRTFEDDPDREAGILWNRSVLSPSKCRVIGNMFCIRSYTKASAIHLGYFYVLLRKIGSDEAVAGRKEGALRLLEEDPYRKSGLFGTVSLYRYPYNMGGGFNWHLSNFPYLALCMDKKGKAKLREKNNDAHLEYYEKTR 242
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9853.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
COG2350:2.360e-13980.17Uncharacterized protein conserved in bacteria n=1 ... [more]
YCII5.700e-12177.43domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9853contigH-canaliculatus_M_contigs9853:310..2940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LMZ2
Model size729
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue3.87e-140
EggNOG OGs2E392@1|root,2SAD8@2759|Eukaryota
Ec32 ortholog descriptionYCII-related
Ec32 orthologEc-16_001160.1
Cds size729
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854230.9742317-CDS-H-canaliculatus_M_contigs9853:309..4051696854230.9742317-CDS-H-canaliculatus_M_contigs9853:309..405Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9853 310..405 +
1696854230.9858305-CDS-H-canaliculatus_M_contigs9853:913..9911696854230.9858305-CDS-H-canaliculatus_M_contigs9853:913..991Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9853 914..991 +
1696854230.9962704-CDS-H-canaliculatus_M_contigs9853:1671..18501696854230.9962704-CDS-H-canaliculatus_M_contigs9853:1671..1850Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9853 1672..1850 +
1696854231.0077968-CDS-H-canaliculatus_M_contigs9853:2330..24871696854231.0077968-CDS-H-canaliculatus_M_contigs9853:2330..2487Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9853 2331..2487 +
1696854231.0189822-CDS-H-canaliculatus_M_contigs9853:2721..29401696854231.0189822-CDS-H-canaliculatus_M_contigs9853:2721..2940Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9853 2722..2940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9853.1.1prot_H-canaliculatus_M_contigs9853.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9853 310..2940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9853.1.1

>prot_H-canaliculatus_M_contigs9853.1.1 ID=prot_H-canaliculatus_M_contigs9853.1.1|Name=mRNA_H-canaliculatus_M_contigs9853.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=243bp
QAKRVPLGEGAGDELFRLKNVGASVPEEDRVDDHSDEAMRRLMFDMDPDS
EEKGPMYFGDAGMYTDEVDHSKYPEEVRFPQCYLAFCIDRPETADEPKNY
VAWGVRKTAHWEHLKWARIAKRTFNDDKDREAGLLWSRSVLSPSKHRIIG
NMFCIRSYSKASASSPHACCEGAVRLLEEDPYRKSGLFGTVSLYRYPYNM
GGEFNWHLSNFPYVALCMDKKGKSKLRKDKQEAHLEYYERTR*
back to top

mRNA from alignment at H-canaliculatus_M_contigs9853:310..2940+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9853.1.1 ID=mRNA_H-canaliculatus_M_contigs9853.1.1|Name=mRNA_H-canaliculatus_M_contigs9853.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2631bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9853:310..2940+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGCGAAGCGAGTCCCGCTGGGGGAGGGGGCAGGCGACGAGTTATTTCG
CCTCAAGAACGTTGGGGCGTCCGTGCCGGAAGAGGACCGAGTCGATGTGA
GCACGTGCTGTAGACCCTGTGTGCTTCGCTTTTGTACCTGTAGCGGGCTG
GAGTGCTGGGCAAGGTGGAGCTTTTGGAGGTTTGTTGTGAGATTCTCGAT
GGTCGTAGTGGTTGATCTTCTTGTGCCTGCTGTTGTCGTCGCTCCTGCCG
TCGGTGCAGTCGAAATCCAGGGGCTAGCACACACAAGTCGATGCTACTGC
GGTTGCTGATTGAACCCCGCTTGTACGTTTCTCCGTCTGGTTCCGCTCGA
AGCATATTTCTCTCTCAGGGAGATGCAGATGCAGAACATCCTGTGCGGGA
GGCTATTTCTCACTCCCTTGCTCTCCTTCTTTCGCCAATTCTCTACTCCC
TTCACGCTGACAACCGCTTCCCCCCCTGCCCCTCCGCCCCCCTCTGCCTG
TGCGCACGAATATTCCACTCCTCACCTTCCTCCGTTTTTGGTTGCTCTTT
TCGCGACTACATCAACTGCGCTTCAACGTGGGTTTTGGTGGTGGCCGTTC
CCAGGACCACAGCGACGAGGCAATGCGAAGGCTCATGTTCGACATGGACC
CGGACTCCGAAGAGAAGGGCCCCATGTACTTCGTGAGTTTGTCAGCCTTT
TTCTTTCCCCTGAACATGTTGGCTCCGCGCCTGTGTAGCTGCTGCGTCGG
TTTGTTTCCTGTGTCGAAATGCCGTTACCTCCATCGGTGCGCTTTCGAGC
GAGGCGGTTGCTTGACGGAGCATCAAATCGGCGTCGAGGCAACGGGCGTG
CTTTGCTTTTCCCGCCAATTCCTTTTTGTGTGTGCGTGTGTTGTTTCACC
ACATACGAAATCATGCTCGATCCATGGCGCTCGTTGTTGTTGGTGTCGGC
GGCGGCCATCGGGTGGGTTCCATCCACGGGGCGCCCGCCATCGGCACGGA
AACTTGCGTCGTCTGTAAGGCTGCCATGGTACGGATTTTAATGCCGTTCC
TCTCGTTACGTTCGTTAAGTTACGGCGTGTCTAATGCCGTCTGCGCACGT
GCTCTTCCAGAGATGCATGGCGGCGACTTCAGAGGGCATCGAGCAAACCG
TTCCTCTCCGCGCAGCCAGCGCCACCACCCTTATCTCCGCGTTGACACGG
CCTTCACCTCTACATGCATCAACGAACACGCGTATCGTCGGTACGAGCGC
CCGTACCTAAGCCCCGCCCTCGCCACCCCTTCCCTTGGCCGATGTCGTCT
CCTCTTCTGTCCTCCCCCCCTCTCTCCGTTCTACTCCCCTCCCACCCCTC
CTTCCTCCGCAGGGGGATGCGGGAATGTACACCGACGAGGTCGACCACAG
CAAGTACCCCGAGGAGGTACGCTTCCCGCAGTGCTACCTCGCCTTCTGCA
TCGACCGGCCGGAGACGGCCGACGAGCCCAAGAACTACGTCGCCTGGGGC
GTCCGGAAGACGGCGCACTGGGAACACCTCAAGTGGGCGAGGTGCGCTCG
GGTGGAGACGAGCGTCGGTGGTGAAGGGTGTTTCTGTGGCGGCGTGAGGC
TTGCTTTGGGAGGAACCGCGAGGGGGCGAAGGTCTTGTAACGGGCATTCG
GGGTCTAGGGATGAAGCGAAAGCGTGTCGTGGAGTGTGTCGTGGAGTGTG
TGCCGGAGTATATTGCGCGAGGGAAAATCACAAAAAGGTGTGTTCGTAGC
TGCCTACCGAGGCGGACGGAAAGGAAGCTCGCCCTGAGAGAGGAGAGAAG
TGACGGCAGCGGCGAGGTTTGGGGGCTCAACGTCTTTTTTTTGGCGATTC
GTTAACGTCTTATACAGTACTGCCTTGTGTAGTGTATCGCGTGTTTCCCC
GAGAAGCGACTCGCGGTCAAAACTGTTTCTAGCACGAATACGAGTATGCC
CTGTAGCACTTTCCGCCGTGCGTTTTCTCGACCGCTGACTCTAATTTTTT
CCTTGTGCGCGGCATCATCAGGATAGCGAAGCGTACGTTCAACGACGACA
AGGACCGAGAAGCGGGACTGTTGTGGAGCCGGAGCGTGTTGTCCCCTTCC
AAGCACCGAATAATCGGGAACATGTTCTGCATCCGCTCCTACTCCAAGGC
AAGCGCTTCCTCCCCTCATGCTTGTTGTGTGTTTTGTCGTTTTGTCGCTG
ATCATCCGAAACGTGCCTGGTTGATCGATTGTTAAGATACAAGAGAGTGT
CCTGTTTGGGTGTTGGCCGTCGAAAAGCCGTGTCCCGAAGCGGTCCCTTC
ACGCACACGAGTGGACCCCTGACCCTCTCTCTGCCCTCTCGTTCGCCGAA
CGATGGGAGTAGCGTCCCTTTCCTCCCCACCGACCGCCCTCAACACCTTG
CGCAACCAACAGGAAGGGGCCGTGCGCCTGCTTGAGGAGGACCCCTACCG
AAAGAGTGGGCTGTTCGGGACGGTTTCGCTGTACCGGTACCCGTACAACA
TGGGCGGGGAGTTCAATTGGCATCTGTCCAATTTCCCGTACGTGGCGCTT
TGCATGGACAAGAAGGGGAAGTCGAAGCTCAGGAAGGACAAGCAGGAGGC
GCACCTGGAGTACTACGAGAGAACCAGGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9853:310..2940+

>mRNA_H-canaliculatus_M_contigs9853.1.1 ID=mRNA_H-canaliculatus_M_contigs9853.1.1|Name=mRNA_H-canaliculatus_M_contigs9853.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=729bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9853:310..2940+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGCGAAGCGAGTCCCGCTGGGGGAGGGGGCAGGCGACGAGTTATTTCG
CCTCAAGAACGTTGGGGCGTCCGTGCCGGAAGAGGACCGAGTCGATGACC
ACAGCGACGAGGCAATGCGAAGGCTCATGTTCGACATGGACCCGGACTCC
GAAGAGAAGGGCCCCATGTACTTCGGGGATGCGGGAATGTACACCGACGA
GGTCGACCACAGCAAGTACCCCGAGGAGGTACGCTTCCCGCAGTGCTACC
TCGCCTTCTGCATCGACCGGCCGGAGACGGCCGACGAGCCCAAGAACTAC
GTCGCCTGGGGCGTCCGGAAGACGGCGCACTGGGAACACCTCAAGTGGGC
GAGGATAGCGAAGCGTACGTTCAACGACGACAAGGACCGAGAAGCGGGAC
TGTTGTGGAGCCGGAGCGTGTTGTCCCCTTCCAAGCACCGAATAATCGGG
AACATGTTCTGCATCCGCTCCTACTCCAAGGCAAGCGCTTCCTCCCCTCA
TGCTTGTTGTGAAGGGGCCGTGCGCCTGCTTGAGGAGGACCCCTACCGAA
AGAGTGGGCTGTTCGGGACGGTTTCGCTGTACCGGTACCCGTACAACATG
GGCGGGGAGTTCAATTGGCATCTGTCCAATTTCCCGTACGTGGCGCTTTG
CATGGACAAGAAGGGGAAGTCGAAGCTCAGGAAGGACAAGCAGGAGGCGC
ACCTGGAGTACTACGAGAGAACCAGGTGA
back to top