mRNA_H-canaliculatus_M_contigs9827.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs9827.2.1
Unique Name	mRNA_H-canaliculatus_M_contigs9827.2.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs9827.2.1 vs.
Match: Sno, (strawberry notch homolog 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ73_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 7.510e-32
Identity = 57/73 (78.08%), Postives = 65/73 (89.04%), Query Frame = 1

Query:    1 QAKNLYLKAAPTVTGKRVKEIQDLCPRARVVYCSATPCSEPMNMGYMTRRGLLGLWGEGTKFENFQDFLKDLD 219
            +AKNLYL + PT+TGK+VKEIQD CP ARVVYCSATPCSEPMNMGYMTR   LGLWG+GT+FE+F DFLKD+D
Sbjct:  250 KAKNLYLASKPTLTGKKVKEIQDRCPNARVVYCSATPCSEPMNMGYMTR---LGLWGDGTRFEDFPDFLKDID 319

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BLAST of mRNA_H-canaliculatus_M_contigs9827.2.1 vs.
Match: PHD-type (domain-containing protein n=2 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835E452_9POAL)

HSP 1 Score: 88.2 bits (217), Expect = 1.030e-18
Identity = 47/75 (62.67%), Postives = 55/75 (73.33%), Query Frame = 1

Query:    1 QAKNLYLKAA--PTVTGKRVKEIQDLCPRARVVYCSATPCSEPMNMGYMTRRGLLGLWGEGTKFENFQDFLKDLD 219
            +AKNL  +A   PT TGK V EIQ++ P+ARVVYCSAT  SEP N+GYM R   LGLWG+GT FENFQ FL  L+
Sbjct:  369 KAKNLIPEAGGQPTRTGKAVLEIQEMLPQARVVYCSATGASEPRNLGYMVR---LGLWGDGTSFENFQKFLGALE 440

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BLAST of mRNA_H-canaliculatus_M_contigs9827.2.1 vs.
Match: PHD-type (domain-containing protein n=10 Tax=Panicoideae TaxID=147369 RepID=A0A1B6PGA3_SORBI)

HSP 1 Score: 88.2 bits (217), Expect = 1.030e-18
Identity = 47/75 (62.67%), Postives = 54/75 (72.00%), Query Frame = 1

Query:    1 QAKNLYLKAA--PTVTGKRVKEIQDLCPRARVVYCSATPCSEPMNMGYMTRRGLLGLWGEGTKFENFQDFLKDLD 219
            +AKNL  +A   PT TGK V EIQD+ P+ARVVYCSAT  SEP N+GYM R   LGLWG+GT FENF  FL  L+
Sbjct:  421 KAKNLIPEAGSQPTRTGKAVLEIQDMLPQARVVYCSATGASEPRNLGYMVR---LGLWGDGTSFENFHQFLGALE 492

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BLAST of mRNA_H-canaliculatus_M_contigs9827.2.1 vs.
Match: Protein (FORGETTER 1 n=5 Tax=Andropogoneae TaxID=147429 RepID=A0A3L6GD96_MAIZE)

HSP 1 Score: 88.2 bits (217), Expect = 1.030e-18
Identity = 47/75 (62.67%), Postives = 54/75 (72.00%), Query Frame = 1

Query:    1 QAKNLYLKAA--PTVTGKRVKEIQDLCPRARVVYCSATPCSEPMNMGYMTRRGLLGLWGEGTKFENFQDFLKDLD 219
            +AKNL  +A   PT TGK V EIQD+ P+ARVVYCSAT  SEP N+GYM R   LGLWG+GT FENF  FL  L+
Sbjct:  392 KAKNLIPEAGSQPTRTGKAVLEIQDMLPQARVVYCSATGASEPRNLGYMVR---LGLWGDGTSFENFNQFLGALE 463

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BLAST of mRNA_H-canaliculatus_M_contigs9827.2.1 vs.
Match: PHD-type (domain-containing protein n=11 Tax=Paniceae TaxID=147428 RepID=K3YFV9_SETIT)

HSP 1 Score: 87.4 bits (215), Expect = 1.920e-18
Identity = 47/75 (62.67%), Postives = 54/75 (72.00%), Query Frame = 1

Query:    1 QAKNLYLKAA--PTVTGKRVKEIQDLCPRARVVYCSATPCSEPMNMGYMTRRGLLGLWGEGTKFENFQDFLKDLD 219
            +AKNL  +A   PT TGK V EIQ+L P+ARVVYCSAT  SEP N+GYM R   LGLWG+GT FENF  FL  L+
Sbjct:  409 KAKNLIPEAGSQPTRTGKAVLEIQELLPQARVVYCSATGASEPRNLGYMVR---LGLWGDGTSFENFHQFLGALE 480

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BLAST of mRNA_H-canaliculatus_M_contigs9827.2.1 vs.
Match: PHD-type (domain-containing protein n=2 Tax=Oryza TaxID=4527 RepID=A0A0E0I8I6_ORYNI)

HSP 1 Score: 86.7 bits (213), Expect = 3.540e-18
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 1

Query:    1 QAKNLYLKAA--PTVTGKRVKEIQDLCPRARVVYCSATPCSEPMNMGYMTRRGLLGLWGEGTKFENFQDFLKDLD 219
            +AKNL  +A   PT TGK V EIQ++ P ARVVYCSAT  SEP N+GYM R   LGLWG+GT F+NFQ FL  L+
Sbjct:  416 KAKNLIPEAGSQPTRTGKAVLEIQEMLPEARVVYCSATGASEPRNLGYMVR---LGLWGDGTSFQNFQKFLGALE 487

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs9827.2.1 vs.
Match: PHD-type (domain-containing protein n=2 Tax=Oryza TaxID=4527 RepID=A0A0D3GXJ8_9ORYZ)

HSP 1 Score: 86.7 bits (213), Expect = 3.560e-18
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 1

Query:    1 QAKNLYLKAA--PTVTGKRVKEIQDLCPRARVVYCSATPCSEPMNMGYMTRRGLLGLWGEGTKFENFQDFLKDLD 219
            +AKNL  +A   PT TGK V EIQ++ P ARVVYCSAT  SEP N+GYM R   LGLWG+GT F+NFQ FL  L+
Sbjct:  360 KAKNLIPEAGSQPTRTGKAVLEIQEMLPEARVVYCSATGASEPRNLGYMVR---LGLWGDGTSFQNFQKFLGALE 431

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BLAST of mRNA_H-canaliculatus_M_contigs9827.2.1 vs.
Match: Protein (strawberry notch-like protein 1 (Fragment) n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5UJI5_9POAL)

HSP 1 Score: 86.7 bits (213), Expect = 3.570e-18
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 1

Query:    1 QAKNLYLKAA--PTVTGKRVKEIQDLCPRARVVYCSATPCSEPMNMGYMTRRGLLGLWGEGTKFENFQDFLKDLD 219
            +AKNL  +A   PT TGK V EIQ++ P+ARVVYCSAT  SEP N+GYM R   LGLWG+GT FENF  FL  L+
Sbjct:  314 KAKNLIPEAGCQPTRTGKAVLEIQEMLPQARVVYCSATGASEPRNLGYMVR---LGLWGDGTSFENFHQFLGALE 385

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs9827.2.1 vs.
Match: PHD-type (domain-containing protein n=1 Tax=Oryza barthii TaxID=65489 RepID=A0A0D3GXJ7_9ORYZ)

HSP 1 Score: 86.7 bits (213), Expect = 3.570e-18
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 1

Query:    1 QAKNLYLKAA--PTVTGKRVKEIQDLCPRARVVYCSATPCSEPMNMGYMTRRGLLGLWGEGTKFENFQDFLKDLD 219
            +AKNL  +A   PT TGK V EIQ++ P ARVVYCSAT  SEP N+GYM R   LGLWG+GT F+NFQ FL  L+
Sbjct:  360 KAKNLIPEAGSQPTRTGKAVLEIQEMLPEARVVYCSATGASEPRNLGYMVR---LGLWGDGTSFQNFQKFLGALE 431

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs9827.2.1 vs.
Match: PHD-type (domain-containing protein n=9 Tax=Oryzinae TaxID=1648021 RepID=A0A0E0QFS5_ORYRU)

HSP 1 Score: 86.7 bits (213), Expect = 3.570e-18
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 1

Query:    1 QAKNLYLKAA--PTVTGKRVKEIQDLCPRARVVYCSATPCSEPMNMGYMTRRGLLGLWGEGTKFENFQDFLKDLD 219
            +AKNL  +A   PT TGK V EIQ++ P ARVVYCSAT  SEP N+GYM R   LGLWG+GT F+NFQ FL  L+
Sbjct:  379 KAKNLIPEAGSQPTRTGKAVLEIQEMLPEARVVYCSATGASEPRNLGYMVR---LGLWGDGTSFQNFQKFLGALE 450

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs9827.2.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs9827.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Sno,	7.510e-32	78.08	strawberry notch homolog 1 n=1 Tax=Ectocarpus sili...	[more]
PHD-type	1.030e-18	62.67	domain-containing protein n=2 Tax=Digitaria exilis...	[more]
PHD-type	1.030e-18	62.67	domain-containing protein n=10 Tax=Panicoideae Tax...	[more]
Protein	1.030e-18	62.67	FORGETTER 1 n=5 Tax=Andropogoneae TaxID=147429 Rep...	[more]
PHD-type	1.920e-18	62.67	domain-containing protein n=11 Tax=Paniceae TaxID=...	[more]
PHD-type	3.540e-18	61.33	domain-containing protein n=2 Tax=Oryza TaxID=4527...	[more]
PHD-type	3.560e-18	61.33	domain-containing protein n=2 Tax=Oryza TaxID=4527...	[more]
Protein	3.570e-18	61.33	strawberry notch-like protein 1 (Fragment) n=1 Tax...	[more]
PHD-type	3.570e-18	61.33	domain-containing protein n=1 Tax=Oryza barthii Ta...	[more]
PHD-type	3.570e-18	61.33	domain-containing protein n=9 Tax=Oryzinae TaxID=1...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs9827	contig	H-canaliculatus_M_contigs9827:3705..4050 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	2880.D7FZ73
PFAMs	AAA_34,Helicase_C_4
Model size	219
Max annot lvl	2759\|Eukaryota
Hectar predicted targeting category	other localisation
Exons	2
Evalue	1.23e-32
EggNOG OGs	KOG1513@1\|root,KOG1513@2759\|Eukaryota
Ec32 ortholog description	P-loop containing nucleoside triphosphate hydrolase
Ec32 ortholog	Ec-02_002340.1
Description	cellular response to interleukin-11
Cds size	219
COG category	S

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854229.5046449-CDS-H-canaliculatus_M_contigs9827:3704..3859	1696854229.5046449-CDS-H-canaliculatus_M_contigs9827:3704..3859	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs9827 3705..3859 +
1696854229.5177915-CDS-H-canaliculatus_M_contigs9827:3986..4050	1696854229.5177915-CDS-H-canaliculatus_M_contigs9827:3986..4050	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs9827 3987..4050 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs9827.2.1	prot_H-canaliculatus_M_contigs9827.2.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs9827 3705..4050 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs9827:3705..4050+
coding sequence from alignment at H-canaliculatus_M_contigs9827:3705..4050+

protein sequence of mRNA_H-canaliculatus_M_contigs9827.2.1

>prot_H-canaliculatus_M_contigs9827.2.1 ID=prot_H-canaliculatus_M_contigs9827.2.1|Name=mRNA_H-canaliculatus_M_contigs9827.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=73bp
QAKNLYLKAAPTVTGKRVKEIQDLCPRARVVYCSATPCSEPMNMGYMTRR
GLLGLWGEGTKFENFQDFLKDLD

mRNA from alignment at H-canaliculatus_M_contigs9827:3705..4050+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs9827.2.1 ID=mRNA_H-canaliculatus_M_contigs9827.2.1|Name=mRNA_H-canaliculatus_M_contigs9827.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=346bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9827:3705..4050+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGCGAAGAACCTCTACCTCAAGGCGGCCCCCACCGTGACCGGGAAGAG
AGTGAAGGAGATCCAGGACCTGTGCCCCAGGGCGCGGGTGGTGTACTGCT
CGGCCACGCCGTGCTCGGAGCCAATGAACATGGGCTACATGACCAGGCGA
GGGCTGTTGTCGTCGTCGTGGGTGTTGGTGGTGGTATCATGCGTGTTGGT
AATGTTGTTGTTGATGTTGTTGGAGAAAGCATCCAACCCCGACGTCGCCC
CCCTCCCACCCTGACTTTTTGTTCATCCTCAGACTGGGCTTGTGGGGCGA
GGGGACGAAGTTCGAAAACTTCCAGGACTTCTTGAAAGACCTCGAC

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9827:3705..4050+

>mRNA_H-canaliculatus_M_contigs9827.2.1 ID=mRNA_H-canaliculatus_M_contigs9827.2.1|Name=mRNA_H-canaliculatus_M_contigs9827.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=219bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9827:3705..4050+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGCGAAGAACCTCTACCTCAAGGCGGCCCCCACCGTGACCGGGAAGAG
AGTGAAGGAGATCCAGGACCTGTGCCCCAGGGCGCGGGTGGTGTACTGCT
CGGCCACGCCGTGCTCGGAGCCAATGAACATGGGCTACATGACCAGGCGA
GGGCTACTGGGCTTGTGGGGCGAGGGGACGAAGTTCGAAAACTTCCAGGA
CTTCTTGAAAGACCTCGAC