mRNA_H-canaliculatus_M_contigs9820.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9820.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9820.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9820.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA6_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 2.360e-26
Identity = 83/144 (57.64%), Postives = 93/144 (64.58%), Query Frame = 1 
Query:  205 QIQMASLQEKSLASRLAYERLQADKAAQEVRLRKAEEQKGLLAREAAAAKDRSAVAEEARRSAESRVRTLEDRLLALGKEEEKASSAEAEAAEKATRGARGQADQIQALREKVGRMEASVRAEKTSREEAEQGLERALSAKGKL 636
            Q+QMA LQEKSLASRLAYERLQADKAA ++R+RKAEEQK  LARE A+AKD+S                        GKEEEK+SSAEA+A     R  R +ADQ   LREKV R+EASVR         EQGLERALSAK KL
Sbjct:    2 QVQMAGLQEKSLASRLAYERLQADKAASDLRIRKAEEQKRQLARETASAKDKSXXXXXXXXXXXXXXXXXXXXXXXXGKEEEKSSSAEAKAXXXXXRTXRSKADQADVLREKVARVEASVRXXXXXXXXXEQGLERALSAKVKL 145
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BLAST of mRNA_H-canaliculatus_M_contigs9820.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YA16_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.760e-11
Identity = 52/127 (40.94%), Postives = 81/127 (63.78%), Query Frame = 1 
Query:   55 SAGSKAVLSALRALQDKIRKLESERDRASVEAGTLRRQIAALQTENDRTAQIQMASLQEKSLASRLAYERLQADKAAQEVRLRKAEEQKGLLAREAAAAKDRSAVAEEARRSAESRVRTLEDRLLAL 435
            S+GS+AVLSALRALQDKI++LE ER +A  E   L++Q+   +    R+ +++  +  E+  ASRLA ER+ A+K   E+RL KAEE K  L +E  A +  ++ +E ARR+A+  +  ++  +  L
Sbjct:  225 SSGSRAVLSALRALQDKIKRLEGERSKALDEVNALKQQLEEAEASAKRSRELEKLTNSEQVHASRLANERVTAEKKVVEMRLSKAEEHKASLRKEIDALRKAASESEIARRTADGNLSVVQGHVREL 351
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9820.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.360e-2657.64protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical2.760e-1140.94protein (Fragment) n=1 Tax=Pinguiococcus pyrenoido... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9820contigH-canaliculatus_M_contigs9820:3..4636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size636
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_004260.1
Cds size636
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9820.1.1prot_H-canaliculatus_M_contigs9820.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9820 3..4636 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854228.988309-CDS-H-canaliculatus_M_contigs9820:2..981696854228.988309-CDS-H-canaliculatus_M_contigs9820:2..98Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9820 3..98 -
1696854228.9998498-CDS-H-canaliculatus_M_contigs9820:731..7611696854228.9998498-CDS-H-canaliculatus_M_contigs9820:731..761Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9820 732..761 -
1696854229.0139604-CDS-H-canaliculatus_M_contigs9820:2127..22621696854229.0139604-CDS-H-canaliculatus_M_contigs9820:2127..2262Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9820 2128..2262 -
1696854229.0250707-CDS-H-canaliculatus_M_contigs9820:2608..26871696854229.0250707-CDS-H-canaliculatus_M_contigs9820:2608..2687Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9820 2609..2687 -
1696854229.0362003-CDS-H-canaliculatus_M_contigs9820:3225..33141696854229.0362003-CDS-H-canaliculatus_M_contigs9820:3225..3314Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9820 3226..3314 -
1696854229.0481827-CDS-H-canaliculatus_M_contigs9820:3966..40601696854229.0481827-CDS-H-canaliculatus_M_contigs9820:3966..4060Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9820 3967..4060 -
1696854229.0594063-CDS-H-canaliculatus_M_contigs9820:4523..46361696854229.0594063-CDS-H-canaliculatus_M_contigs9820:4523..4636Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9820 4524..4636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9820.1.1

>prot_H-canaliculatus_M_contigs9820.1.1 ID=prot_H-canaliculatus_M_contigs9820.1.1|Name=mRNA_H-canaliculatus_M_contigs9820.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=212bp
GGGGGGGGGGRGGGGGGASAGSKAVLSALRALQDKIRKLESERDRASVEA
GTLRRQIAALQTENDRTAQIQMASLQEKSLASRLAYERLQADKAAQEVRL
RKAEEQKGLLAREAAAAKDRSAVAEEARRSAESRVRTLEDRLLALGKEEE
KASSAEAEAAEKATRGARGQADQIQALREKVGRMEASVRAEKTSREEAEQ
GLERALSAKGKL
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mRNA from alignment at H-canaliculatus_M_contigs9820:3..4636-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9820.1.1 ID=mRNA_H-canaliculatus_M_contigs9820.1.1|Name=mRNA_H-canaliculatus_M_contigs9820.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4634bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9820:3..4636- (Hapterophycus canaliculatus Oshoro7m male)
GGGGGGGGGGGGGGGGGGGGGGGGGGCGGTCGGGGGGGGGGGGGGGGGGG
GGCAAGCGCCGGCAGCAAGGCGGTTCTGTCAGCCCTGCGCGCTCTCCAGG
ACAAAATAAGGAAGTGAGTGGAGAGTGGAAGGGTCGGCGCGTGGGGGAGC
GCGTGGTAGAAGGGCGGGAGAGGGGAAGGTCCCTCTGCGAGCATCTCGCC
TCCTCGCCGTTTCGACACCCTTTACGACCACCGCGGCAGGAGAAGTGGAC
ACATGGGATCCAGCCTCGTACATGTCCCGAGTTCTGGGTGTGTCGGCGTG
GTGTTTGCTTGGGTTTTAGGGCTCGAAGAGCAGGCGAGGTCTTGGAACGC
TCTCCTGCGTGCTTGCCTCATCCGCATGCCTGCTTTTGTAGTTTGCTTGG
TTGCCTCGTTGCGACCTCAAGCCTGTAGACACGAGAGATGAACAGCAGTC
TCTCTGGCTTTCCTTTCGGTATGTCTCTGCTGGTGCAGGTGATGGTGCTG
CTGGTGGTGCTGCCACTACCACATCTATCGCTCCCCACTTATTCGCTCTC
CGCTTATTCTTGGCAATCGCGCGCAGGCTCGAAAGCGAGCGTGATCGGGC
TTCGGTGGAGGCGGGAACGCTGAGGAGACAGATCGCGGCGTTGCAGACTG
AGAACGACCGCACCGCCCAGGTGCCGATTTTTTTTGCCGTCCACATTTCC
ACGCCGCCAATGGCTAGATGTGGATTTCTAGACGTACGAGACGAAGCCTT
GATCCTTTTCTTTCCTTGTCTGGCGTCCGTGGTCGGTTTCAAGCCGACAA
TCCGCCTAGTGGCTCGGTCTTCTTTTGGGACAAGTATCGCTGTTGCTGCA
GTCGTCGTCCCATCGCTAGTCGGTCGCTGCCGCTAAACCGTGTTTGCGCT
TTGGCTGCGGAAGCGGCCGTCGTGCGCTGTACGTTCGATTGTTCAGGTAC
AATTCTCCCTTCCAGACCTTGGTGTTGTGGGCAGATGAAAACGAATGCCA
GTAGACGCTCAGTAGCAGCGGTGGTGGTGGCCGAAGCGACATGCAACATG
AAACAAACACAAAAAGCATGAGAAGCTACGACGTACCTCAGGAGGTGTTC
TAACGGTGTTGTTATGTTTTCTTTAAAAAAAGCATGAGAAGCTAGGACAG
ACCCAGAATCCCGCCATGAGCGACTTACGTGTCTCGTCCCTACCCGCCTC
CCCCCTCTCTGCCCCCCCCCCCTCCCACGCCGTTGTGCCCCTGCGGCGGT
GTCGGTGCGTGCGCCCGACACGATTCCTATCGGACGACAACGGGGGTGAA
AAAATGAAAAAAAAAATCGCAGATTCAGATGGCGAGCCTCCAAGAGAAGT
CGCTAGCGTCGAGGCTGGCGTACGAGAGACTGCAGGCAGACAAGGCTGCG
CAGGAAGTGAGGTGAGGCGAAGGCGCGGGGAGGCCGTCGCCGGCCCGTCA
CGAGACGCGTGGGATCGCGAGAAAACGAGGCCCGAAGGGACGTTGATCTC
GTCCACCGCCTCGCACGTGGACGGGCCGGGCCGCTCACTTGTTCGGCTGG
TGCTCGGAGCAAACGTGACGAAAAGGCGGCTCCTGTTCCTGTCTTGGGCC
CGCACCCCCGGCCTCTGTGTCTGTCTCGGAGGGAATTCCTTCTTGGGTGT
CGACTCTTTCCTTTCCTTTGCTTTGCTTTGCTTTCCTTTTCAGAAATGCC
TGTTTGGTGCATGAGGGCCAGGCCGCTGTGCGAGCCGGTACTGCCGTGCT
AAGGTTGCAGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTACCATCGCTGCTAATTCGAGAGAGATCTTTCGATTTGACA
TCCGCATTATATCGTGTTGCGCCAACTACTGTTGTGAAAGTGCGCGCGAC
TCCAGTCGTCCTCTGTTGTTCTGATCTCCCCCGCTCGTGGCGCACATAGG
CTTCGCAAGGCAGAGGAGCAGAAAGGTCTGCTGGCGAGAGAAGCAGCTGC
GGCGAAGGACCGATCCGCGGTGGCAGAGGTAGGAGGCACGAGAGTATCAT
GTGGCACAGCTATGTCTGTTTCCAGCACCTGGCGGCTACCGTTTCGCTTG
ATGGGTGCAGGGCGCAGCACGCCACTCATTGTGTCGTGTGTTCACCTCAG
ATTTTCCGGATGCGCCGGAAGGTATTGGTCGGAATACTCGGCCAAGGTTT
TTAGGGGAAAGGTCGAGCAGCACCAAAGAAAAAAAGAAGAGGAATACCCT
GCTGTGAGGCAAAGTTTTTGTTACACAAACGCATACACAACACCACCGTG
TTCCAAAAGAGAGAAGAGAAGCATGCGCTATATGTGCACGCACGACTCAC
GCCCATGTACGCGCGCGCGAACAGGAAGCCCGTCGGTCGGCGGAGTCTCG
AGTGCGAACGCTGGAAGACCGACTCCTGGCCCTGGGAAAGGAGGAAGAGA
AGGCCAGCTCCGCCGAGGCGGAGGCGGCGGAGAAGGCCACGAGAGGAGCA
AGGGGCCAGGTGCGTCGACCCGAAAGATAGAAGGCAAACAGGCGTCGTCC
CCCGGAGGCTCTTACCGTGAAAGCAAGCACTCCGGAGTGGAGATGCGTGC
TGCTTTTCTCCACGTAGCTGCCGCCGCCGCCGCCGCCGCCGCAGAACACG
AGCTCGTGACGTGCGCCTGCCGTCCCCGGGCGATCGGTGCGAGGGGCCGC
CGTCGCGTCGTTTTACCGCCGCCCACGAAGGTGCACGTGGGCACTTGTAG
ATGCTGCCGCACGCCGGCGAGCCATGAGGCCGTAGCGCCGTCCGCGGCTT
GCGCGCGCGCGCGGAGCCGCGTTTCTGGCCGGCTACGTGGAGGGGGGTGC
CTGCGGAGCCGCGATGCGCTTCTTGCAGGCAGACCGCTGAAACCTTCGCG
TCGCCGAATCGCCGTGTAGTATCCTACAGGGTAGTGGGTGTTGATGCCGC
GTGGGATCGAGCCGTATGGTGGTGTTGACCAAACGGTCTCGGGTGTACTA
AAGCGCAGGTGAGAAAGAGCACAGCAGTCGGTTGGCCCTGTCCAGGAGGG
GTTGCGTTGTTGGTGTCCAAGAGGGGTTGCCGTCGATGGTGGTGGTGGTG
GTGCTGCTGCTGCTGCCGCTGTTGCTGCTGCCGCGAGCGGAGATGCCGAG
GCACGGCCTGTTTCCACAATAGTCGCCGCGGTGCGCTCTTTGTCGGGATA
AGACGCTCCCCCGGCTGATCGTTGGGAAGGTCGTTGATGCTACTGCTGCC
GCCTTTACTTGCCGTCGAGGATCTAGGAGTGAACAAGGGCCAAACCTGCT
GCCGCCTATACTTCCCGTCGAGGATCTTGGAGTGGACAGGGACCAAACCC
AGCCGCTCGATCTGCTGTTGTTTTGTGTTTGGGTCGGATACGGTGTGCGA
TGTCGCTTGGGGTACGGTAGGTCGTTGAAAGCGGCCCGCTCGTAGGGTGG
AGCTCTTTTTGAGGTGAGTAGGCAGGCTTACCGTTGCCGGCGAATGGTGG
GGACAACGCAGGACGACGACGTGCTGGCGAACGAGAGCTTTCCCGAAAGT
TTGAAACGCGGCGTTGCCGTTCCGGTGCGAAAGAAACATGTGGCAGCGGT
CTCCGAAGCGACGCCTCGCTCATCCTTCTCTGATGAATCTAACCACCCCT
TTTCCCATCGGCCGCTCTACCCTCCTCCTCTCTCGGCCCCCGCCTTCTGC
CTGTCTCCTCTGGATGCCCCTCCACCCTCTCCCCCCCCCGCTCATTTCTC
CAAACGGTGCGGGATGACGACACGCGCTTCATAACGACTGCTGCGGGCTC
CATTTGGATCAATCCATCGCCGTCGTGTGGACGCCGGTGTGGGTCACCGG
TGTGGAACTACTTATTTCGCTCCAGGCCGACCAAATACAGGCCTTGCGAG
AAAAGGTGACTCGTGGGGGGGAGGGAGCGGGGGGGGGTTCGTTATCCGAT
CCTCACCATTAACTACGTACCGTTGCCGATGATTGCTTCACCAAGAGATC
CGCATAAAGGTACAAATAGTCTTCGTTCCACTCGTTGTCGCCATCGCGTG
CGTGTTCCATCTCTTCATCTCTCCCGTGTTCTTGATTTTTTCATCCCCCT
ACGTGCTCGCGGTGGTTGCACTTTAGCCCGTCTTGGTCTGGCTCGTCGCG
AGCATCCCGGGAGCTGCTCTACACCACTCCGGTTAATTCCTGTCTGCGTG
CAGCGGCGGTCGTGATGGGATCTTGCTCGGCTTGATACCTCCTCCTCCTC
CTCCTCCTCCCCCTTACCTGTTTGGTGCTTGGTGCTTGCCTTGGAGTCTT
TGCGCGCGCAGGGTCCAGCAGTGCCTCCCCCCGTTGGGGCTTCCGAACGG
ACCGCTCGCGCCAAAAAGAAAATAAGGGAAAATTCCGTGTACGCGATAAA
ACAAAAAGAAGGAACAGCCTACTTGTACGCGTAACAAAACGGCATGATCA
GCGGGAGACGATATCACGCTTGCCTCTGAAGTAAGCGGCTTCTTGTTCAC
ACCAGCGTCGGTCGATTTTCAACCGCAACACGAAGCAGGTGGGCCGTATG
GAGGCTTCCGTCAGGGCGGAGAAGACGTCGAGGGAGGAGGCCGAACAAGG
GCTGGAGCGAGCGCTTTCGGCGAAGGGGAAGCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9820:3..4636-

>mRNA_H-canaliculatus_M_contigs9820.1.1 ID=mRNA_H-canaliculatus_M_contigs9820.1.1|Name=mRNA_H-canaliculatus_M_contigs9820.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=636bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9820:3..4636- (Hapterophycus canaliculatus Oshoro7m male)
GGGGGGGGGGGGGGGGGGGGGGGGGGCGGTCGGGGGGGGGGGGGGGGGGG
GGCAAGCGCCGGCAGCAAGGCGGTTCTGTCAGCCCTGCGCGCTCTCCAGG
ACAAAATAAGGAAGCTCGAAAGCGAGCGTGATCGGGCTTCGGTGGAGGCG
GGAACGCTGAGGAGACAGATCGCGGCGTTGCAGACTGAGAACGACCGCAC
CGCCCAGATTCAGATGGCGAGCCTCCAAGAGAAGTCGCTAGCGTCGAGGC
TGGCGTACGAGAGACTGCAGGCAGACAAGGCTGCGCAGGAAGTGAGGCTT
CGCAAGGCAGAGGAGCAGAAAGGTCTGCTGGCGAGAGAAGCAGCTGCGGC
GAAGGACCGATCCGCGGTGGCAGAGGAAGCCCGTCGGTCGGCGGAGTCTC
GAGTGCGAACGCTGGAAGACCGACTCCTGGCCCTGGGAAAGGAGGAAGAG
AAGGCCAGCTCCGCCGAGGCGGAGGCGGCGGAGAAGGCCACGAGAGGAGC
AAGGGGCCAGGCCGACCAAATACAGGCCTTGCGAGAAAAGGTGGGCCGTA
TGGAGGCTTCCGTCAGGGCGGAGAAGACGTCGAGGGAGGAGGCCGAACAA
GGGCTGGAGCGAGCGCTTTCGGCGAAGGGGAAGCTC
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