mRNA_H-canaliculatus_M_contigs9816.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9816.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9816.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9816.1.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase 64E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX8_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.580e-9
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:   19 TSLQDEVEALGRAESGFVGLDNQGATCYLNALLQ 120
            T  Q + EALGRAESGFVGLDNQGATCYLNALLQ
Sbjct:   21 TVQQGDEEALGRAESGFVGLDNQGATCYLNALLQ 54
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BLAST of mRNA_H-canaliculatus_M_contigs9816.1.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase 24 (Fragment) n=6 Tax=Opisthorchiidae TaxID=6196 RepID=A0A419QHT9_CLOSI)

HSP 1 Score: 47.0 bits (110), Expect = 7.970e-5
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 LPPSLDTSLQDEVEALGRAESGFVGLDNQGATCYLNALLQ 120
            LPP L   +Q  +   GR+ESGFVGL N GATCY+NA+LQ
Sbjct: 2451 LPPDLVWDVQPALT--GRSESGFVGLRNGGATCYMNAVLQ 2488
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9816.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Ubiquitin2.580e-985.29carboxyl-terminal hydrolase 64E n=1 Tax=Ectocarpus... [more]
Ubiquitin7.970e-560.00carboxyl-terminal hydrolase 24 (Fragment) n=6 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9816contigH-canaliculatus_M_contigs9816:709..828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSX8
PFAMsUCH
Model size120
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.23e-10
EggNOG OGsCOG5077@1|root,KOG4598@2759|Eukaryota
Descriptionthiol-dependent ubiquitin-specific protease activity
Cds size120
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854228.7429113-CDS-H-canaliculatus_M_contigs9816:708..8281696854228.7429113-CDS-H-canaliculatus_M_contigs9816:708..828Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9816 709..828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9816.1.1prot_H-canaliculatus_M_contigs9816.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9816 709..828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9816.1.1

>prot_H-canaliculatus_M_contigs9816.1.1 ID=prot_H-canaliculatus_M_contigs9816.1.1|Name=mRNA_H-canaliculatus_M_contigs9816.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=40bp
LPPSLDTSLQDEVEALGRAESGFVGLDNQGATCYLNALLQ
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mRNA from alignment at H-canaliculatus_M_contigs9816:709..828+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9816.1.1 ID=mRNA_H-canaliculatus_M_contigs9816.1.1|Name=mRNA_H-canaliculatus_M_contigs9816.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=120bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9816:709..828+ (Hapterophycus canaliculatus Oshoro7m male)
CTTCCCCCATCGCTTGACACATCCTTGCAGGATGAAGTGGAGGCGCTTGG
GCGAGCGGAGAGTGGCTTCGTTGGTCTTGACAACCAAGGAGCGACTTGCT
ACCTCAACGCTCTGCTTCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9816:709..828+

>mRNA_H-canaliculatus_M_contigs9816.1.1 ID=mRNA_H-canaliculatus_M_contigs9816.1.1|Name=mRNA_H-canaliculatus_M_contigs9816.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=120bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9816:709..828+ (Hapterophycus canaliculatus Oshoro7m male)
CTTCCCCCATCGCTTGACACATCCTTGCAGGATGAAGTGGAGGCGCTTGG
GCGAGCGGAGAGTGGCTTCGTTGGTCTTGACAACCAAGGAGCGACTTGCT
ACCTCAACGCTCTGCTTCAG
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