mRNA_H-canaliculatus_M_contigs9801.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9801.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9801.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9801.1.1 vs.
Match: Uncharacterized (protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1_ECTSI)

HSP 1 Score: 218 bits (556), Expect = 9.900e-69
Identity = 102/155 (65.81%), Postives = 126/155 (81.29%), Query Frame = 1
Query:    1 LFTVALNNDQWEGSMMCGACIEGTADGSYPKNDGGGHSPIPRTFKAFVTDRCPECVEGDLDFAMSGDGRWFIDWKFVECPGQELSFVSPSANPYYWKLQPRGTKTPVQTLTIDGQRAERSDNDNFFVRTNSGSKWNGAQTVMTTTVAGETETTEV 465
            +  VALN +Q+  S+MCGAC+EGTA GS     G G++PIP TFKAF+TD+CPEC +GDLDF+MSGDGRW I+WKFV CPG+E SFVSPSANPYYWK+QPRGT TPV +LT+DGQ A R+ +++F V  N G+ W+GAQTV+TTTV+G TET EV
Sbjct:  136 MIPVALNAEQYGDSLMCGACVEGTASGS-----GSGNNPIPSTFKAFITDKCPECQKGDLDFSMSGDGRWDIEWKFVACPGEETSFVSPSANPYYWKVQPRGTTTPVVSLTVDGQSAMRTTDNHFEVH-NDGAAWSGAQTVVTTTVSGVTETAEV 284          
BLAST of mRNA_H-canaliculatus_M_contigs9801.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW3_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.160e-46
Identity = 81/152 (53.29%), Postives = 104/152 (68.42%), Query Frame = 1
Query:   10 VALNNDQWEGSMMCGACIEGTADGSYPKNDGGGHSPIPRTFKAFVTDRCPECVEGDLDFAMSGDGRWFIDWKFVECPGQELSFVSPSANPYYWKLQPRGTKTPVQTLTIDGQRAERSDNDNFFVRTNSGSKWNGAQTVMTTTVAGETETTEV 465
            VALN  Q+  S+MCG+C+EG   G      GGG +PI  TFK F+ D+CPEC EGDLDF    DGRW I+W+FV CPG+E+SF      PYYWK+QPRGT TPV++LTI G+ A R+D+++F +   SG+ W   Q V+TTTV G  E TE+
Sbjct:  383 VALNAAQYGDSLMCGSCVEGEGTGG-----GGGDNPIG-TFKGFIMDKCPECHEGDLDFGTGLDGRWDIEWRFVACPGEEVSFKVVEMTPYYWKIQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGNPWYEPQMVVTTTVGGVVEETEM 528          
BLAST of mRNA_H-canaliculatus_M_contigs9801.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP4_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 5.090e-45
Identity = 81/153 (52.94%), Postives = 100/153 (65.36%), Query Frame = 1
Query:   10 VALNNDQWEGSMMCGACIEGTADGSYPKNDGGGHSPIPRTFKAFVTDRCPECVEGDLDFAMSGDGRWFIDWKFVECP-GQELSFVSPSANPYYWKLQPRGTKTPVQTLTIDGQRAERSDNDNFFVRTNSGSKWNGAQTVMTTTVAGETETTEV 465
            VALN  Q+  S+MCGAC+EG   G      G G  P+  TFK F+ D+CPEC EGDLDF    DGRW I WKFVECP G+E+SF       YYWK+QPRGT TPV++LTI G+ A R+D+++F +   SG  W   Q V+TTTV G  E TE+
Sbjct:  346 VALNEPQYGDSLMCGACVEGEGTGG-----GSGSDPVG-TFKGFIMDKCPECSEGDLDFGTGKDGRWDIKWKFVECPAGEEVSFKVEQKTEYYWKIQPRGTATPVESLTIGGRAAARTDDNHFELEHPSGDPWYEPQMVVTTTVGGVVEETEM 492          
BLAST of mRNA_H-canaliculatus_M_contigs9801.1.1 vs.
Match: Putative (lipoprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHU1_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 1.210e-42
Identity = 75/147 (51.02%), Postives = 97/147 (65.99%), Query Frame = 1
Query:    1 LFTVALNNDQWEGSMMCGACIEGTADGSYPKNDGGGHSPIPRTFKAFVTDRCPECVEGDLDFAMSGDGRWFIDWKFVECPG-QELSFVSPSANPYYWKLQPRGTKTPVQTLTIDGQRAERSDNDNFFVRTNSGSKWNGAQTVMTTTV 438
            +  VALN++Q+  S MCGACIEG   G     +G G  P+   FKA+VTDRCPEC+ GDLDFA  GDGRW I W FV C G  + +F+   +N +YWK+QPRG ++PV+ L I+G  AERS+ DNFF+    G  ++G Q V T TV
Sbjct:   71 MIPVALNDEQYADSYMCGACIEGEGFG-----EGEGRDPVEGAFKAYVTDRCPECLFGDLDFAADGDGRWDISWHFVPCEGGSDQTFLFEGSNEFYWKIQPRGGRSPVERLWINGDEAERSE-DNFFIL--EGGPFDGEQEVHTKTV 209          
BLAST of mRNA_H-canaliculatus_M_contigs9801.1.1 vs.
Match: uncharacterized (protein LOC106157840 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HSP2_LINUN)

HSP 1 Score: 95.5 bits (236), Expect = 3.830e-21
Identity = 49/131 (37.40%), Postives = 74/131 (56.49%), Query Frame = 1
Query:    7 TVALNNDQWEGSMMCGACIEGTADGSYPKNDGGGHSPIPRTFKAFVTDRCPECVEGDLDFAMSGDGRWFIDWKFVECP-GQELSFVSPSANPYYWKLQPRGTKTPVQTLTI-DGQRAE----RSDNDNFFV 381
            T A+N +Q+ GS+ CG C+  T  G      G G +P+  T+  +VTD CP C +GD+DFA+ GDGRW ID+  V CP    +S+    ++P+Y K+Q   T+ PV  + + +G   E       ND F++
Sbjct:   70 TAAINIEQFTGSLTCGICLRVTGSGQ-----GLGLNPLTGTYLVYVTDLCPSCKQGDVDFALVGDGRWNIDFTAVPCPFNDNVSYRFQDSSPWYIKIQVGNTRLPVTGMALYNGASKEYVPMMRTNDGFWI 195          
BLAST of mRNA_H-canaliculatus_M_contigs9801.1.1 vs.
Match: expansin-YoaJ-like (n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB09B08)

HSP 1 Score: 93.6 bits (231), Expect = 1.850e-20
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 1
Query:   10 VALNNDQWEGSMMCGACIEGTADGSYPKNDGGGHSPIPRTFKAFVTDRCPECVEGDLDFAMSGDGRWFIDWKFVECP--GQELSFVSPSANPYYWKLQPRGTKTPVQTLTID 339
            VA+N +Q+ GS+ CG C      G      G G  PI   F  FV D CPEC EGD+D A  GDG W ++ + V+CP    ++ +    +NP+Y KLQ R  + PV ++ +D
Sbjct:   65 VAINAEQYSGSIACGMCFRVRGKGV-----GTGSDPIQGDFYVFVNDICPECKEGDIDLAEEGDGSWEVEIQAVQCPVGNTKIEYKFQGSNPWYIKLQVRNARIPVNSIMVD 171          
BLAST of mRNA_H-canaliculatus_M_contigs9801.1.1 vs.
Match: Expansin ((Peptidoglycan-binding protein) n=2 Tax=Marinicella litoralis TaxID=644220 RepID=A0A4R6XIA9_9GAMM)

HSP 1 Score: 92.0 bits (227), Expect = 1.840e-19
Identity = 53/138 (38.41%), Postives = 73/138 (52.90%), Query Frame = 1
Query:    4 FTVALNNDQWEGSMM---CGACIEGTADGSYPKNDGGGHSPIPRTFKAFVTDRCPECVEGDLDFAMSG--DGRWFIDWKFVECP--GQELSFVSPSANPYYWKLQPRGTKTPVQTLTIDGQR------AERSDNDNFF 378
            F VALN  Q+    M   CG C+  T  G+     G G+ P P+ F A V DRCPEC+EGDLD       DGRW I W  ++CP     L+++   +NP+Y K+  R  +  +++L +  Q       AER+  DNFF
Sbjct:  101 FKVALNQSQYTSGDMSAGCGTCLSATYLGT-----GLGNDPPPQQFTALVVDRCPECIEGDLDLHAEPQLDGRWDIAWSAIDCPVGNTTLAYLFEGSNPFYIKMGVRNHRIAIKSLQVQPQTNGPFFTAERTS-DNFF 232          
BLAST of mRNA_H-canaliculatus_M_contigs9801.1.1 vs.
Match: expansin-YoaJ-like (n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE62068)

HSP 1 Score: 90.9 bits (224), Expect = 2.350e-19
Identity = 43/112 (38.39%), Postives = 61/112 (54.46%), Query Frame = 1
Query:   10 VALNNDQWEGSMMCGACIEGTADGSYPKNDGGGHSPIPRTFKAFVTDRCPECVEGDLDFAMSGDGRWFIDWKFVECP--GQELSFVSPSANPYYWKLQPRGTKTPVQTLTID 339
            VA+N +Q+ GS+ CG C      G      G G  PI   F  FV D CPEC EGD+D A  GDG W ++ + V+CP    ++ +    +N +Y KLQ R  + PV ++ +D
Sbjct:   74 VAINAEQYSGSLACGMCFRVLGTGV-----GTGSDPIKGDFYVFVNDICPECKEGDIDLAEEGDGSWEVEIQAVQCPVGNTKIEYKFQGSNAWYIKLQVRNARLPVNSILVD 180          
BLAST of mRNA_H-canaliculatus_M_contigs9801.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4B2M7_LOTGI)

HSP 1 Score: 89.7 bits (221), Expect = 6.220e-19
Identity = 45/118 (38.14%), Postives = 63/118 (53.39%), Query Frame = 1
Query:    4 FTVALNNDQWEGSMMCGACIEGTADGSYPKNDGGGHSPIPRTFKAFVTDRCPECVEGDLDFAMSGDGRWFIDWKFVECP--GQELSFVSPSANPYYWKLQPRGTKTPV-QTLTIDGQR 348
            + VALN  Q+  +M CG C    A+G      G G  PI   F  FV D CPEC++GDLD A  GDGRW I  + V+CP     + ++   +N +Y KLQ R  + P  +   + G++
Sbjct:   69 YLVALNKPQFHDAMTCGMCFRVHAEGK-----GAGLDPIEGDFNVFVKDMCPECLQGDLDLAEKGDGRWKILMQAVQCPVGNSYIEYLLQGSNVWYIKLQVRNARVPATEVRALQGEK 181          
BLAST of mRNA_H-canaliculatus_M_contigs9801.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9LCA8_BIOGL)

HSP 1 Score: 87.0 bits (214), Expect = 6.580e-18
Identity = 44/112 (39.29%), Postives = 61/112 (54.46%), Query Frame = 1
Query:   10 VALNNDQWEGSMMCGACIEGTADGSYPKNDGGGHSPIPRTFKAFVTDRCPECVEGDLDFAMSGDGRWFIDWKFVECP--GQELSFVSPSANPYYWKLQPRGTKTPVQTLTID 339
            VALN  Q+  SM CG CI+    G      G G++PI      +V D CP C EGD+DFA+ GDGRW I  + V+CP     + +    +N +Y KLQ R  + P+  + I+
Sbjct:   70 VALNRPQFLNSMTCGMCIKVVGSGH-----GLGNNPIVGEHIVYVKDMCPVCHEGDVDFALDGDGRWNITMQAVQCPVGSSTIQYAFQGSNAWYIKLQIRNARIPITGVQIE 176          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9801.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
Uncharacterized9.900e-6965.81protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LRN1... [more]
Uncharacterized1.160e-4653.29protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.090e-4552.94protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Putative1.210e-4251.02lipoprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
uncharacterized3.830e-2137.40protein LOC106157840 n=1 Tax=Lingula unguis TaxID=... [more]
expansin-YoaJ-like1.850e-2039.29n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001... [more]
Expansin1.840e-1938.41(Peptidoglycan-binding protein) n=2 Tax=Marinicell... [more]
expansin-YoaJ-like2.350e-1938.39n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE6... [more]
Uncharacterized6.220e-1938.14protein n=1 Tax=Lottia gigantea TaxID=225164 RepID... [more]
Uncharacterized6.580e-1839.29protein n=2 Tax=Biomphalaria glabrata TaxID=6526 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9801contigH-canaliculatus_M_contigs9801:3559..4625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LRN1
Model size477
Max annot lvl2759|Eukaryota
KEGG koko:K20628
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.62e-69
EggNOG OGs2D16Q@1|root,2SGXE@2759|Eukaryota
Cds size477
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854227.9756074-CDS-H-canaliculatus_M_contigs9801:3558..38831696854227.9756074-CDS-H-canaliculatus_M_contigs9801:3558..3883Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9801 3559..3883 -
1696854227.9920552-CDS-H-canaliculatus_M_contigs9801:4473..46251696854227.9920552-CDS-H-canaliculatus_M_contigs9801:4473..4625Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9801 4474..4625 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9801.1.1prot_H-canaliculatus_M_contigs9801.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9801 3559..4625 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9801.1.1

>prot_H-canaliculatus_M_contigs9801.1.1 ID=prot_H-canaliculatus_M_contigs9801.1.1|Name=mRNA_H-canaliculatus_M_contigs9801.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=159bp
LFTVALNNDQWEGSMMCGACIEGTADGSYPKNDGGGHSPIPRTFKAFVTD
RCPECVEGDLDFAMSGDGRWFIDWKFVECPGQELSFVSPSANPYYWKLQP
RGTKTPVQTLTIDGQRAERSDNDNFFVRTNSGSKWNGAQTVMTTTVAGET
ETTEVQFY*
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mRNA from alignment at H-canaliculatus_M_contigs9801:3559..4625-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9801.1.1 ID=mRNA_H-canaliculatus_M_contigs9801.1.1|Name=mRNA_H-canaliculatus_M_contigs9801.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1067bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9801:3559..4625- (Hapterophycus canaliculatus Oshoro7m male)
CTCTTTACAGTCGCCCTCAACAACGACCAATGGGAAGGCTCAATGATGTG CGGCGCGTGCATCGAAGGGACAGCCGACGGGTCGTACCCCAAGAACGACG GGGGCGGACACTCCCCAATCCCAAGGACCTTCAAGGCCTTCGTTACCGAC AGGTGATGAGATACACACGTTGCACGTTGCCGTCATTGAGCGTCCGTTCC CTGCCGCTATGCTCTCAATCCTGCACTTGGCGCAGAGAGTGGTCGAGAGT GGTCGAATGGTCCTATGGGTTTTTTTTTTCTGGGTATTTGATGTTTGATG GCGCGTTTCGATGTCAAGTGCTTACTCTCACCCGGAACATTTTCCGTGGA AGATTATTCTGAGGTCGCGATAAAGTTGGACAACGTGGTCGCATCTCGGG GACGGAACGGGTTTCACGCGTGAGTCACTTGGTGTGTGCAGCTCCTGTGC CGAGATTCCTGGTGCTGTTTCGGCTGCGTACAAACTCGCGCTTCATGAGC GCCGGAGAGACAAGAAAAAACGGAGAACCATGGCAGGGTTTGCAGCAAGC TTGGGACGCGAGGACAGCAATGACAGCAATAACCACGACGAGGATGCCGA AGCCGATGACGGTGGAGACGACGGAAGCAAGAAGCAGAGTCGTCGTCAGG AACCCAATTTGTCGACTGCAGCAAATGCATGTCTTGCGGCATTTATGTAC GTGTGTGCTGATCGCCCCCCGTTTGCCCTTCGCCCCGCCCAGGTGTCCGG AGTGCGTCGAAGGCGACCTCGACTTCGCCATGAGTGGCGATGGAAGGTGG TTTATCGACTGGAAGTTCGTTGAGTGCCCGGGGCAGGAGCTTTCCTTCGT GTCTCCCTCGGCGAACCCGTACTACTGGAAGCTGCAGCCCCGCGGGACGA AGACGCCCGTCCAGACCCTGACAATCGATGGGCAGAGAGCAGAAAGGAGC GACAACGACAACTTCTTCGTGAGGACCAACTCCGGGAGTAAGTGGAACGG GGCGCAGACCGTGATGACAACAACCGTGGCGGGCGAGACGGAGACTACCG AAGTCCAATTTTACTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9801:3559..4625-

>mRNA_H-canaliculatus_M_contigs9801.1.1 ID=mRNA_H-canaliculatus_M_contigs9801.1.1|Name=mRNA_H-canaliculatus_M_contigs9801.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=477bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9801:3559..4625- (Hapterophycus canaliculatus Oshoro7m male)
CTCTTTACAGTCGCCCTCAACAACGACCAATGGGAAGGCTCAATGATGTG
CGGCGCGTGCATCGAAGGGACAGCCGACGGGTCGTACCCCAAGAACGACG
GGGGCGGACACTCCCCAATCCCAAGGACCTTCAAGGCCTTCGTTACCGAC
AGGTGTCCGGAGTGCGTCGAAGGCGACCTCGACTTCGCCATGAGTGGCGA
TGGAAGGTGGTTTATCGACTGGAAGTTCGTTGAGTGCCCGGGGCAGGAGC
TTTCCTTCGTGTCTCCCTCGGCGAACCCGTACTACTGGAAGCTGCAGCCC
CGCGGGACGAAGACGCCCGTCCAGACCCTGACAATCGATGGGCAGAGAGC
AGAAAGGAGCGACAACGACAACTTCTTCGTGAGGACCAACTCCGGGAGTA
AGTGGAACGGGGCGCAGACCGTGATGACAACAACCGTGGCGGGCGAGACG
GAGACTACCGAAGTCCAATTTTACTGA
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