mRNA_H-canaliculatus_M_contigs980.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs980.1.1
Unique NamemRNA_H-canaliculatus_M_contigs980.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs980.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K884_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 2.520e-64
Identity = 148/259 (57.14%), Postives = 163/259 (62.93%), Query Frame = 1 
Query:   16 DDPQQQVETISHRLQTKKGGDTGHSATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPQSHDVGGPSASV-SKSTSSAARARKHATGSKEKAGAEKVFGFHWDEEFLLPGVSDSATIIFTVLHQAPTRVVCLGQALVEPKQFSKNEEHVRTIPLAKQQVVVPSGPQYRGEEARIVNAEWVKPGNLTFSIRKSSYCDAHCSEVNGPIVEEINTLALAESQAVRRRDELAPAAKRDLQKQANKTTRESHDGKRLEGPKK 789
            DDPQQQVETISHRLQTKKGGD G     XXXXXXXXXXXXX                   QSH    PS    S S SS   AR+   GSK+KAG EK + F WDE          ATIIFTVLHQAPTR VCLGQ  VEPK+F KN EHV T+ LAK+QV VPS P  RGEEARI N +  KPG LTF+IRK+S CDAHCSEV+GPI EEINTLALAE Q VR R   + ++     K+ +  T  SHD K   G  K
Sbjct:   35 DDPQQQVETISHRLQTKKGGDAGXXXXXXXXXXXXXXXXXXSNA----------------QSHHADAPSIPTKSTSKSSTKHAREKVAGSKQKAGTEKTYSFQWDE----------ATIIFTVLHQAPTRAVCLGQTFVEPKRFKKNMEHVCTVALAKKQVEVPSAPHNRGEEARIANIDSAKPGKLTFTIRKASSCDAHCSEVHGPIAEEINTLALAEGQ-VRGRQNESTSSVIGHTKERDGNTHASHDEKNSHGGSK 266
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs980.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.520e-6457.14protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs980contigH-canaliculatus_M_contigs980:170..4016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Model size810
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-00_001680.1
Cds size810
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854227.8630383-CDS-H-canaliculatus_M_contigs980:169..3341696854227.8630383-CDS-H-canaliculatus_M_contigs980:169..334Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs980 170..334 -
1696854227.874936-CDS-H-canaliculatus_M_contigs980:1266..13241696854227.874936-CDS-H-canaliculatus_M_contigs980:1266..1324Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs980 1267..1324 -
1696854227.889323-CDS-H-canaliculatus_M_contigs980:2365..24601696854227.889323-CDS-H-canaliculatus_M_contigs980:2365..2460Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs980 2366..2460 -
1696854227.8995306-CDS-H-canaliculatus_M_contigs980:2765..29261696854227.8995306-CDS-H-canaliculatus_M_contigs980:2765..2926Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs980 2766..2926 -
1696854227.9097571-CDS-H-canaliculatus_M_contigs980:3685..40161696854227.9097571-CDS-H-canaliculatus_M_contigs980:3685..4016Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs980 3686..4016 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs980.1.1prot_H-canaliculatus_M_contigs980.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs980 170..4016 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs980.1.1

>prot_H-canaliculatus_M_contigs980.1.1 ID=prot_H-canaliculatus_M_contigs980.1.1|Name=mRNA_H-canaliculatus_M_contigs980.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=270bp
RSHPRDDPQQQVETISHRLQTKKGGDTGHSATAAAAASASHTEKHHSDNS
SSSDNHPAAHGHHHPQSHDVGGPSASVSKSTSSAARARKHATGSKEKAGA
EKVFGFHWDEEFLLPGVSDSATIIFTVLHQAPTRVVCLGQALVEPKQFSK
NEEHVRTIPLAKQQVVVPSGPQYRGEEARIVNAEWVKPGNLTFSIRKSSY
CDAHCSEVNGPIVEEINTLALAESQAVRRRDELAPAAKRDLQKQANKTTR
ESHDGKRLEGPKKERFAVR*
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mRNA from alignment at H-canaliculatus_M_contigs980:170..4016-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs980.1.1 ID=mRNA_H-canaliculatus_M_contigs980.1.1|Name=mRNA_H-canaliculatus_M_contigs980.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3847bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs980:170..4016- (Hapterophycus canaliculatus Oshoro7m male)
CGTTCTCACCCCAGAGACGATCCTCAGCAACAGGTGGAGACAATATCCCA
CCGGCTTCAGACCAAGAAAGGAGGAGACACCGGCCACTCAGCCACCGCCG
CCGCAGCCGCTTCCGCCTCTCATACAGAAAAGCACCACAGCGACAACAGC
AGTAGCTCCGACAACCATCCCGCCGCCCACGGCCACCATCATCCACAATC
GCACGATGTTGGCGGCCCTTCGGCGTCGGTATCAAAGTCCACGTCCTCTG
CGGCCAGAGCTCGCAAGCACGCCACTGGGTCTAAGGAGAAGGCTGGAGCT
GAGAAGGTCTTCGGCTTTCACTGGGACGAGGGTGAGAAGATGCTCTACTG
AGAGACTGTGTCACAACAGATTCCGAGGGACGGGGAACCAGTCAACCTCT
CTTGGTATGCTTGGTCCCGCTTGACCATCATGCTTGCCCGAGTAATGGGA
CCAGTCAAGTAAGGGCTTATTGAGGTGTTGTCTGAAGCACCTTTCAAAAG
GTACCGGACGTCAAACACCCCCCTGCGGGATATATTTCTCCTCCGTCGAT
TTGGTTTTCAAAGCCCAGCGATGAAAAAGTTAATTGTTCATTATCCTGAA
GCTAGATGCGAGGGGGGGCGTAGGATGGTCACCGCCTTTACCCCGCACAA
CATTACACCGCCAGAAGGGTCTGTGGTGAGCTTTGACTGTGTAGAGTAGG
GAAAACCTCAGGAGCACACCGGTAAGACGAATCTACAAGGCCATTCTAGG
ACAGGAGAGGAATGGGCGAACGTGTGTGACAGTCATCACCTTGAGACGAT
TTGCTCCGTGCCTTCACAACAAACGCCGTTCCTAGACGATGCCTCAGCAA
CCAGGACGAAGTACCTTCCATAAAAATCCAAGGCCGCTCGGTGCTGACTT
CTTCGTCGCTCCTGGGGAATGGAGCATCGAAAAATCCCTTCGGATGGGTG
GCAAAGGCGGGCACGACGGGGTAAACGCTATACCCACACGCTCAACCGAA
ACGCTAAACGTGGTGGAAGCATGAAAATCTGACGCAAACAACAACAACAT
CCCTCCGGTCTGCTCATCTACGTCATTTGACAACGGAAAGAGTTCCTCCT
GCCCGGAGTGTCGGACTCGGCAACGATAATCTTCACCGTTCTCCACCAGG
CCCCCACAAGGGTTGTGTGTCTCGGGCAGGCCCTCGTTGAGCCAAAACAA
TTTTCGAAAAACGAGGAGCACGTGCGGACCATTCCCTTGGCAAAGCAACA
GGTACACCAGGCCAAAAGGGGGGGGGGTAACCGCACACATTGGGAATATC
TCCTTGTACTGCGATCGTCAGACTCATATTGCGGATGGATGAATGGGATG
CAGAAAATTACGAAGTAGACGCTCGGGATCATGAAGAAACGAACCGTACT
CTTTCTCTTCACGTACTGTAGTGTGTCTCGGTGGCAGCGAAAAGCGCTGT
TTACATTCCTTGTTGCGTATTCTGCCCGCAACAGAACATTTGTCGCTAGG
TTTATCTCTCCCATTTTTGCGGGAGCAAAATCATTTCTGCTTTGTCGCTG
CAACAGGTGGTGGTACCCTCCGGTCCCCAGTACCGCGGGGAGGAGGCGAG
AATAGTCAACGCCGAGTGGGTCAAACCCGGAAATCTTACCTTCTCCATAC
GGTGAGGAAAAAATGCGGGCATTCATTCTCGTGCGTTTGCCGCACCTAAG
CAACCATGATGAGTCGTGATGTGGCGGTGTCGTCAACCTCAGCTTGCGAA
CGAACACAAAAGTAGTGTGAAACCGAGAGCAAGGGTCTGGAGCCGTCCCC
GGGGTGAGAGACAGCTTCTTTGTTGTAGAGTTCGAAGGAGAACATAAGAA
GATACAAGATACGGACGGAGGTCGCACCCATTGGCTCATGATGGACGTAT
GTACCGAAGAAGGAAAGGAGATCTAGCAAGGCGACCCTCTGAGTGAATGG
TTATGACGTTCTTAGAGGGCATGAGGGTATCATCGTACATTTGACACAGC
AGCCCCGAAATGAGCGGGAGAATGATGCAGCCGCACCCCCGCAGATCAAC
ATTCCGCGAAAAAGTACACGGGGCTTCGAGACAGCGCACGGTGTGGGGGC
ATCCATCAATCGTGTGCGCGGTTGACCAAACAGCTGAGGCGCTAGAAACA
AAGCTGAGGTCGTGAAAGGTTCTTAAGGATAATAGTGATGACGTATTTAC
ATGAAGAAGGGGCAATGCAATCGAATTTAGTTCGCTCGTGGCATTTTCGT
CTGGAAAGAGAACTAGCACAGCAAAAAGCTGGTTTGCTGCAGCACCAAAA
ACACGTTTGCTTGGCGCTGTTCCCCACTTTCGCCGATCAATCGCGATACC
ACGCCAACATAAAACGTTAAGTAGGAGGAAGGAGCTGAAGAACTAAAGCC
ATGAATACGGCAGGAGGACGAAAGCTCGGAGGGGCAACGGATGTGGGGTG
TTTCAAGAATATCTCGATTAGCGGACAAGATGCTGGTATTGTTGTCGTTG
TTGTCGTCGTCGTATTTTTGTAGTTGTTGTTTTCCTCTTGATAATAAAAA
AAACAATTGATCCTCTTCCGAGAACTCCTTCCCTATCTCGTGTCAGATCC
ATTTGTATTGCCACGGAATTGGCAGTCACGGGGTACGCCAAGCCAGCATT
TCTCTCTCGTTCTTGCGCCCGCGGTTTCTACTTGAACACCAGCAAGTCTT
CTTACTGTGATGCCCACTGCTCGGAGGTGAACGGCCCCATCGTCGAAGAG
GTACGCACGTGCATAGCAAGTTGCAAAGGCACTCCACATGCTATACGCAC
CCGACTGATCCTCAACGCCCAGTATCTCCTAAGGCAGCACCATACCTAAA
GAGTGAAGAGAGTGCAGCCGTTGGGAAGTATGAGAGCCGATGGTGCCGAC
GAGACATTTGCGTTTGAAGATGGGAGCGGATGGAGTAATAATACATTGTA
TGACCCACGGTGTAACATAATTTTCCTTCAGAAACCGTCCTGTTTGCAAG
GTTAGCTTTACAGGGATATTTCAGGCGTCGCAAAAGACTTCTGACACTCC
TTCGCCGAGGACTACAACACGCTGTCTGCCCTCAAATGATTGGACATGGT
CTGCGTAAGGTTTGAAGATTTAGGATGGAGCACTTCACCCAAAAAGCCGC
CGTATATGTTTAATCAACTGTTCGTTATATTGTATGTGAAAAGAGGGAAC
CGTCCTCGACGACAGCCGGTAAAGAGGCGGTACCTTTCTAAAGATGTCCT
CTACATATACCAGCATTCATGTCTTTGTTGTGTACGATTGCGGGCAGCCC
TTGAAAAGTTACGGCCCCGGCTCATTCCATTCTGTATCCCCAAGACATTT
CCGAAAAGGAGTTCAACACTTACACTGTTGGCACCAGTCTGAAAGGTCCC
TATGATACTGCTTAGGTGAATCCCTGACCCATTACTTTTGTCCTATTTAT
TGGACAAGCACAAAACTGAGAGGATTCAAAGAAGCAGCTATTATCCGTGA
TGATACGGAGGAAGGCCGACACCACAAGTCCACAACCAACGCTACCACCA
CCATCAACACCGAAACCACCAACGTCAGCGTCATCACCACCGACCTAACA
CCAACAACACCAACATCAATAACAACCAGAACAACACCAGTAACACTCTT
CCCCACTCTCTTTCGTCACCTGCTGGTGACAGATTAATACCCTCGCCCTT
GCCGAGAGTCAAGCAGTGCGGCGGCGGGACGAGTTGGCCCCCGCCGCAAA
AAGGGATTTGCAGAAGCAAGCAAACAAGACGACGAGGGAGTCACATGATG
GCAAAAGGCTCGAAGGACCAAAGAAAGAGAGGTTTGCCGTAAGATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs980:170..4016-

>mRNA_H-canaliculatus_M_contigs980.1.1 ID=mRNA_H-canaliculatus_M_contigs980.1.1|Name=mRNA_H-canaliculatus_M_contigs980.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=810bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs980:170..4016- (Hapterophycus canaliculatus Oshoro7m male)
CGTTCTCACCCCAGAGACGATCCTCAGCAACAGGTGGAGACAATATCCCA
CCGGCTTCAGACCAAGAAAGGAGGAGACACCGGCCACTCAGCCACCGCCG
CCGCAGCCGCTTCCGCCTCTCATACAGAAAAGCACCACAGCGACAACAGC
AGTAGCTCCGACAACCATCCCGCCGCCCACGGCCACCATCATCCACAATC
GCACGATGTTGGCGGCCCTTCGGCGTCGGTATCAAAGTCCACGTCCTCTG
CGGCCAGAGCTCGCAAGCACGCCACTGGGTCTAAGGAGAAGGCTGGAGCT
GAGAAGGTCTTCGGCTTTCACTGGGACGAGGAGTTCCTCCTGCCCGGAGT
GTCGGACTCGGCAACGATAATCTTCACCGTTCTCCACCAGGCCCCCACAA
GGGTTGTGTGTCTCGGGCAGGCCCTCGTTGAGCCAAAACAATTTTCGAAA
AACGAGGAGCACGTGCGGACCATTCCCTTGGCAAAGCAACAGGTGGTGGT
ACCCTCCGGTCCCCAGTACCGCGGGGAGGAGGCGAGAATAGTCAACGCCG
AGTGGGTCAAACCCGGAAATCTTACCTTCTCCATACGCAAGTCTTCTTAC
TGTGATGCCCACTGCTCGGAGGTGAACGGCCCCATCGTCGAAGAGATTAA
TACCCTCGCCCTTGCCGAGAGTCAAGCAGTGCGGCGGCGGGACGAGTTGG
CCCCCGCCGCAAAAAGGGATTTGCAGAAGCAAGCAAACAAGACGACGAGG
GAGTCACATGATGGCAAAAGGCTCGAAGGACCAAAGAAAGAGAGGTTTGC
CGTAAGATGA
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