mRNA_H-canaliculatus_M_contigs9739.1.2 (mRNA) Hapterophycus canaliculatus Oshoro7m male
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Match: Bardet-Biedl (syndrome 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G173_ECTSI) HSP 1 Score: 188 bits (478), Expect = 6.760e-57 Identity = 94/110 (85.45%), Postives = 102/110 (92.73%), Query Frame = 1
Query: 4 KTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQVHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADGTDAFAAYFAEANKACDREV 333
KTIRVRESKFG ALVVETS HSGGYILGFRLDPA++LE+VHQELSSLHQVHAA PI+GVDF+EE+SPPAMESRTV TDD+ EVLDT+ GTDAFAAYFAEANKACDREV
Sbjct: 210 KTIRVRESKFGPALVVETSVHSGGYILGFRLDPADQLERVHQELSSLHQVHAADPILGVDFEEEDSPPAMESRTVAVTDDDVEVLDTDEAGTDAFAAYFAEANKACDREV 319
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Match: Bardet-Biedl (syndrome 5 (Fragment) n=7 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7I0K7_PARCT) HSP 1 Score: 123 bits (308), Expect = 3.530e-32 Identity = 60/115 (52.17%), Postives = 86/115 (74.78%), Query Frame = 1
Query: 4 KTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQVHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADGTDAFAAYFAEANKACDREVANTPK 348
K++R+R+SKFG ALV+ETS SGGY+LGFR+DPAEKL+ +E+ SL +V++A+PI GV+F+ EE P ++ TV D+ E+ +E +GTDAFAAYFA+ +K+ DRE P+
Sbjct: 137 KSVRIRDSKFGLALVLETSQQSGGYVLGFRIDPAEKLQDAVKEIQSLQRVYSASPIFGVEFEAEERPNTLQETTVDPVHDDIEIT-SEGEGTDAFAAYFADGDKSKDREPVYNPE 250
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Match: Bardet-Biedl (syndrome 5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZA3_9STRA) HSP 1 Score: 124 bits (312), Expect = 3.830e-32 Identity = 59/114 (51.75%), Postives = 84/114 (73.68%), Query Frame = 1
Query: 4 KTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQVHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADGTDAFAAYFAEANKACDREVANTP 345
KT+R RESKFG ALV+ET+A SGGYILGFRLDP E+L ++ E+S LHQV++A P GV ++EEE P +E R + +D+ +++DT++ ++A A Y+A+ANKA DR + P
Sbjct: 208 KTVRKRESKFGPALVIETTARSGGYILGFRLDPPERLMELFHEVSLLHQVYSADPNFGVHYREEEKPAVLEKRRIAPREDDVQIVDTDSKASNASAVYYADANKASDRSIVFDP 321
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Match: Putative (Bardet-Biedl syndrome 5 protein-like (Fragment) n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JLH5_STIJA) HSP 1 Score: 120 bits (301), Expect = 1.720e-31 Identity = 55/108 (50.93%), Postives = 86/108 (79.63%), Query Frame = 1
Query: 4 KTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQVHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADGTDAFAAYFAEANKACDR 327
++++VR+SKFG ALV+ETS+ SGGY+LGFR+DP EKL++ +E+ SLH+V++++P++GV+F+ +E P +E V + D+ +++D EAD +DAFAAYFA+ NK DR
Sbjct: 102 RSVKVRDSKFGMALVLETSSQSGGYVLGFRIDPMEKLQETVKEIQSLHRVYSSSPVLGVEFERDEHPQVLEDLKVESVQDDVDIVD-EADHSDAFAAYFADGNKEKDR 208
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Match: Uncharacterized (protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PC08_POMCA) HSP 1 Score: 120 bits (301), Expect = 1.060e-30 Identity = 61/110 (55.45%), Postives = 84/110 (76.36%), Query Frame = 1
Query: 4 KTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQVHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADG-TDAFAAYFAEANKACDRE 330
K++++R+SKFG ALVVET A SGGY+LGFR+DP EKL+QV +E+ +LH+V++A PI GV+F+ EE P ++E T A D+ E+ + DG TDAFAAYFA+ NK +RE
Sbjct: 186 KSVKIRDSKFGVALVVETLAMSGGYVLGFRIDPIEKLQQVAKEIQNLHRVYSACPIFGVEFENEEKPQSIEDLTTEAVQDDVEI---QNDGQTDAFAAYFADGNKDANRE 292
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Match: Putative (Bardet-Biedl syndrome 5 protein-like n=2 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KZ03_STIJA) HSP 1 Score: 120 bits (301), Expect = 1.710e-30 Identity = 55/108 (50.93%), Postives = 86/108 (79.63%), Query Frame = 1
Query: 4 KTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQVHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADGTDAFAAYFAEANKACDR 327
++++VR+SKFG ALV+ETS+ SGGY+LGFR+DP EKL++ +E+ SLH+V++++P++GV+F+ +E P +E V + D+ +++D EAD +DAFAAYFA+ NK DR
Sbjct: 211 RSVKVRDSKFGMALVLETSSQSGGYVLGFRIDPMEKLQETVKEIQSLHRVYSSSPVLGVEFERDEHPQVLEDLKVESVQDDVDIVD-EADHSDAFAAYFADGNKEKDR 317
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Match: Bardet-Biedl (syndrome 5 (Fragment) n=1 Tax=Hypotaenidia okinawae TaxID=2861861 RepID=A0A6G1S1K5_9GRUI) HSP 1 Score: 114 bits (286), Expect = 3.610e-30 Identity = 56/109 (51.38%), Postives = 80/109 (73.39%), Query Frame = 1
Query: 4 KTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQVHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADGTDAFAAYFAEANKACDRE 330
++I++R+SKFG ALV+E+S SGGY+LGF++DP EKL++ +E++SLH+V++A PI GVD++ EE P +E TV D+ E+ D TDAF AYFA+ NK DRE
Sbjct: 22 RSIKIRDSKFGLALVIESSQQSGGYVLGFKIDPVEKLQEAVKEINSLHKVYSANPIFGVDYEMEEKPQPLEELTVEQVQDDVEI--ESDDHTDAFVAYFADENKQHDRE 128
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Match: Bardet-Biedl (syndrome 5 protein isoform X2 n=2 Tax=Amniota TaxID=32524 RepID=UPI000CF0086C) HSP 1 Score: 118 bits (295), Expect = 6.600e-30 Identity = 57/110 (51.82%), Postives = 82/110 (74.55%), Query Frame = 1
Query: 1 QKTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQVHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADGTDAFAAYFAEANKACDRE 330
Q++I++R+SKFG ALV+E+S SGGY+LGF++DP EKL++ +E++SLH+V++A+PI GVD++ EE P +E TV D+ E+ E TDAF AYFA+ NK DRE
Sbjct: 175 QRSIKIRDSKFGLALVIESSQQSGGYVLGFKIDPVEKLQEAVKEINSLHRVYSASPIFGVDYEMEEKPQPLEDLTVEQVQDDVEIESDEQ--TDAFVAYFADGNKQQDRE 282
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Match: Predicted (protein n=9 Tax=Hexacorallia TaxID=6102 RepID=A7RY88_NEMVE) HSP 1 Score: 118 bits (296), Expect = 8.220e-30 Identity = 58/109 (53.21%), Postives = 82/109 (75.23%), Query Frame = 1
Query: 4 KTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQVHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADGTDAFAAYFAEANKACDRE 330
KT+R+R+SKFG ALVVETS SGGY+LGFR+DP EKL++ +E+ SL +V++A+PI GV+F+ E+ P A++ TV D+ E+++ + TDAFAAYFA+ K DRE
Sbjct: 205 KTVRIRDSKFGLALVVETSQQSGGYVLGFRVDPVEKLQEAVKEIQSLQKVYSASPIFGVEFETEDKPEALDKITVDPVQDDIEIVNEGS--TDAFAAYFADGEKTSDRE 311
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Match: Uncharacterized (protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7V9C2_CAPTE) HSP 1 Score: 118 bits (296), Expect = 8.370e-30 Identity = 56/109 (51.38%), Postives = 83/109 (76.15%), Query Frame = 1
Query: 4 KTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQVHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADGTDAFAAYFAEANKACDRE 330
KT++VR+SKFG ALV+E+SA SGGY+LGFR+DP EKL + +E+ SLH+V+++ PI G++++ E+ +++ TV + D+ E+ D AD +DAFAAYFA+ NK DRE
Sbjct: 205 KTVKVRDSKFGLALVIESSASSGGYVLGFRIDPVEKLHEAVKEIQSLHRVYSSCPIFGIEYETEDKVQSIQELTVESVQDDVEI-DNSADQSDAFAAYFADGNKQTDRE 312 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs9739.1.2 >prot_H-canaliculatus_M_contigs9739.1.2 ID=prot_H-canaliculatus_M_contigs9739.1.2|Name=mRNA_H-canaliculatus_M_contigs9739.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=120bp QKTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQback to top mRNA from alignment at H-canaliculatus_M_contigs9739:3133..4439- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs9739.1.2 ID=mRNA_H-canaliculatus_M_contigs9739.1.2|Name=mRNA_H-canaliculatus_M_contigs9739.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1307bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9739:3133..4439- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9739:3133..4439- >mRNA_H-canaliculatus_M_contigs9739.1.2 ID=mRNA_H-canaliculatus_M_contigs9739.1.2|Name=mRNA_H-canaliculatus_M_contigs9739.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=360bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9739:3133..4439- (Hapterophycus canaliculatus Oshoro7m male)back to top |