mRNA_H-canaliculatus_M_contigs9739.1.2 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9739.1.2
Unique NamemRNA_H-canaliculatus_M_contigs9739.1.2
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Match: Bardet-Biedl (syndrome 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G173_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 6.760e-57
Identity = 94/110 (85.45%), Postives = 102/110 (92.73%), Query Frame = 1
Query:    4 KTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQVHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADGTDAFAAYFAEANKACDREV 333
            KTIRVRESKFG ALVVETS HSGGYILGFRLDPA++LE+VHQELSSLHQVHAA PI+GVDF+EE+SPPAMESRTV  TDD+ EVLDT+  GTDAFAAYFAEANKACDREV
Sbjct:  210 KTIRVRESKFGPALVVETSVHSGGYILGFRLDPADQLERVHQELSSLHQVHAADPILGVDFEEEDSPPAMESRTVAVTDDDVEVLDTDEAGTDAFAAYFAEANKACDREV 319          
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Match: Bardet-Biedl (syndrome 5 (Fragment) n=7 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7I0K7_PARCT)

HSP 1 Score: 123 bits (308), Expect = 3.530e-32
Identity = 60/115 (52.17%), Postives = 86/115 (74.78%), Query Frame = 1
Query:    4 KTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQVHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADGTDAFAAYFAEANKACDREVANTPK 348
            K++R+R+SKFG ALV+ETS  SGGY+LGFR+DPAEKL+   +E+ SL +V++A+PI GV+F+ EE P  ++  TV    D+ E+  +E +GTDAFAAYFA+ +K+ DRE    P+
Sbjct:  137 KSVRIRDSKFGLALVLETSQQSGGYVLGFRIDPAEKLQDAVKEIQSLQRVYSASPIFGVEFEAEERPNTLQETTVDPVHDDIEIT-SEGEGTDAFAAYFADGDKSKDREPVYNPE 250          
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Match: Bardet-Biedl (syndrome 5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZA3_9STRA)

HSP 1 Score: 124 bits (312), Expect = 3.830e-32
Identity = 59/114 (51.75%), Postives = 84/114 (73.68%), Query Frame = 1
Query:    4 KTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQVHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADGTDAFAAYFAEANKACDREVANTP 345
            KT+R RESKFG ALV+ET+A SGGYILGFRLDP E+L ++  E+S LHQV++A P  GV ++EEE P  +E R +   +D+ +++DT++  ++A A Y+A+ANKA DR +   P
Sbjct:  208 KTVRKRESKFGPALVIETTARSGGYILGFRLDPPERLMELFHEVSLLHQVYSADPNFGVHYREEEKPAVLEKRRIAPREDDVQIVDTDSKASNASAVYYADANKASDRSIVFDP 321          
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Match: Putative (Bardet-Biedl syndrome 5 protein-like (Fragment) n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JLH5_STIJA)

HSP 1 Score: 120 bits (301), Expect = 1.720e-31
Identity = 55/108 (50.93%), Postives = 86/108 (79.63%), Query Frame = 1
Query:    4 KTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQVHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADGTDAFAAYFAEANKACDR 327
            ++++VR+SKFG ALV+ETS+ SGGY+LGFR+DP EKL++  +E+ SLH+V++++P++GV+F+ +E P  +E   V +  D+ +++D EAD +DAFAAYFA+ NK  DR
Sbjct:  102 RSVKVRDSKFGMALVLETSSQSGGYVLGFRIDPMEKLQETVKEIQSLHRVYSSSPVLGVEFERDEHPQVLEDLKVESVQDDVDIVD-EADHSDAFAAYFADGNKEKDR 208          
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Match: Uncharacterized (protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PC08_POMCA)

HSP 1 Score: 120 bits (301), Expect = 1.060e-30
Identity = 61/110 (55.45%), Postives = 84/110 (76.36%), Query Frame = 1
Query:    4 KTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQVHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADG-TDAFAAYFAEANKACDRE 330
            K++++R+SKFG ALVVET A SGGY+LGFR+DP EKL+QV +E+ +LH+V++A PI GV+F+ EE P ++E  T  A  D+ E+   + DG TDAFAAYFA+ NK  +RE
Sbjct:  186 KSVKIRDSKFGVALVVETLAMSGGYVLGFRIDPIEKLQQVAKEIQNLHRVYSACPIFGVEFENEEKPQSIEDLTTEAVQDDVEI---QNDGQTDAFAAYFADGNKDANRE 292          
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Match: Putative (Bardet-Biedl syndrome 5 protein-like n=2 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KZ03_STIJA)

HSP 1 Score: 120 bits (301), Expect = 1.710e-30
Identity = 55/108 (50.93%), Postives = 86/108 (79.63%), Query Frame = 1
Query:    4 KTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQVHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADGTDAFAAYFAEANKACDR 327
            ++++VR+SKFG ALV+ETS+ SGGY+LGFR+DP EKL++  +E+ SLH+V++++P++GV+F+ +E P  +E   V +  D+ +++D EAD +DAFAAYFA+ NK  DR
Sbjct:  211 RSVKVRDSKFGMALVLETSSQSGGYVLGFRIDPMEKLQETVKEIQSLHRVYSSSPVLGVEFERDEHPQVLEDLKVESVQDDVDIVD-EADHSDAFAAYFADGNKEKDR 317          
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Match: Bardet-Biedl (syndrome 5 (Fragment) n=1 Tax=Hypotaenidia okinawae TaxID=2861861 RepID=A0A6G1S1K5_9GRUI)

HSP 1 Score: 114 bits (286), Expect = 3.610e-30
Identity = 56/109 (51.38%), Postives = 80/109 (73.39%), Query Frame = 1
Query:    4 KTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQVHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADGTDAFAAYFAEANKACDRE 330
            ++I++R+SKFG ALV+E+S  SGGY+LGF++DP EKL++  +E++SLH+V++A PI GVD++ EE P  +E  TV    D+ E+     D TDAF AYFA+ NK  DRE
Sbjct:   22 RSIKIRDSKFGLALVIESSQQSGGYVLGFKIDPVEKLQEAVKEINSLHKVYSANPIFGVDYEMEEKPQPLEELTVEQVQDDVEI--ESDDHTDAFVAYFADENKQHDRE 128          
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Match: Bardet-Biedl (syndrome 5 protein isoform X2 n=2 Tax=Amniota TaxID=32524 RepID=UPI000CF0086C)

HSP 1 Score: 118 bits (295), Expect = 6.600e-30
Identity = 57/110 (51.82%), Postives = 82/110 (74.55%), Query Frame = 1
Query:    1 QKTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQVHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADGTDAFAAYFAEANKACDRE 330
            Q++I++R+SKFG ALV+E+S  SGGY+LGF++DP EKL++  +E++SLH+V++A+PI GVD++ EE P  +E  TV    D+ E+   E   TDAF AYFA+ NK  DRE
Sbjct:  175 QRSIKIRDSKFGLALVIESSQQSGGYVLGFKIDPVEKLQEAVKEINSLHRVYSASPIFGVDYEMEEKPQPLEDLTVEQVQDDVEIESDEQ--TDAFVAYFADGNKQQDRE 282          
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Match: Predicted (protein n=9 Tax=Hexacorallia TaxID=6102 RepID=A7RY88_NEMVE)

HSP 1 Score: 118 bits (296), Expect = 8.220e-30
Identity = 58/109 (53.21%), Postives = 82/109 (75.23%), Query Frame = 1
Query:    4 KTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQVHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADGTDAFAAYFAEANKACDRE 330
            KT+R+R+SKFG ALVVETS  SGGY+LGFR+DP EKL++  +E+ SL +V++A+PI GV+F+ E+ P A++  TV    D+ E+++  +  TDAFAAYFA+  K  DRE
Sbjct:  205 KTVRIRDSKFGLALVVETSQQSGGYVLGFRVDPVEKLQEAVKEIQSLQKVYSASPIFGVEFETEDKPEALDKITVDPVQDDIEIVNEGS--TDAFAAYFADGEKTSDRE 311          
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Match: Uncharacterized (protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7V9C2_CAPTE)

HSP 1 Score: 118 bits (296), Expect = 8.370e-30
Identity = 56/109 (51.38%), Postives = 83/109 (76.15%), Query Frame = 1
Query:    4 KTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQVHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADGTDAFAAYFAEANKACDRE 330
            KT++VR+SKFG ALV+E+SA SGGY+LGFR+DP EKL +  +E+ SLH+V+++ PI G++++ E+   +++  TV +  D+ E+ D  AD +DAFAAYFA+ NK  DRE
Sbjct:  205 KTVKVRDSKFGLALVIESSASSGGYVLGFRIDPVEKLHEAVKEIQSLHRVYSSCPIFGIEYETEDKVQSIQELTVESVQDDVEI-DNSADQSDAFAAYFADGNKQTDRE 312          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9739.1.2 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Bardet-Biedl6.760e-5785.45syndrome 5 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
Bardet-Biedl3.530e-3252.17syndrome 5 (Fragment) n=7 Tax=Alcyonacea TaxID=406... [more]
Bardet-Biedl3.830e-3251.75syndrome 5 n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
Putative1.720e-3150.93Bardet-Biedl syndrome 5 protein-like (Fragment) n=... [more]
Uncharacterized1.060e-3055.45protein n=2 Tax=Pomacea canaliculata TaxID=400727 ... [more]
Putative1.710e-3050.93Bardet-Biedl syndrome 5 protein-like n=2 Tax=Stich... [more]
Bardet-Biedl3.610e-3051.38syndrome 5 (Fragment) n=1 Tax=Hypotaenidia okinawa... [more]
Bardet-Biedl6.600e-3051.82syndrome 5 protein isoform X2 n=2 Tax=Amniota TaxI... [more]
Predicted8.220e-3053.21protein n=9 Tax=Hexacorallia TaxID=6102 RepID=A7RY... [more]
Uncharacterized8.370e-3051.38protein n=1 Tax=Capitella teleta TaxID=283909 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9739contigH-canaliculatus_M_contigs9739:3133..4439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G173
Preferred nameBBS5
PFAMsBBL5
Model size360
Max annot lvl2759|Eukaryota
KEGG koko:K16748
Hectar predicted targeting categoryother localisation
GOsGO:0001085,GO:0001103,GO:0001654,GO:0001655,GO:0001745,GO:0001751,GO:0001754,GO:0001822,GO:0001947,GO:0002009,GO:0003007,GO:0003143,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006996,GO:0007275,GO:0007368,GO:0007369,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0008134,GO:0008150,GO:0008289,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009987,GO:0015630,GO:0016043,GO:0022008,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0032266,GO:0032400,GO:0032401,GO:0032402,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0033059,GO:0034451,GO:0034464,GO:0035050,GO:0035091,GO:0035239,GO:0035295,GO:0036064,GO:0042051,GO:0042461,GO:0042462,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043473,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048562,GO:0048568,GO:0048592,GO:0048598,GO:0048645,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048749,GO:0048793,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051875,GO:0051877,GO:0051904,GO:0051905,GO:0060271,GO:0060429,GO:0060562,GO:0060993,GO:0061371,GO:0070121,GO:0070491,GO:0070925,GO:0071840,GO:0072001,GO:0072003,GO:0072114,GO:0072116,GO:0072359,GO:0090596,GO:0097014,GO:0097546,GO:0097730,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901981
Exons3
Evalue1.11e-57
EggNOG OGs28IRP@1|root,2QR2Z@2759|Eukaryota
Ec32 ortholog descriptionBardet-Biedl syndrome 5
Ec32 orthologEc-02_001280.1
Descriptionphosphatidylinositol-3-phosphate binding
Cds size360
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854224.659962-CDS-H-canaliculatus_M_contigs9739:3132..32911696854224.659962-CDS-H-canaliculatus_M_contigs9739:3132..3291Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9739 3133..3291 -
1696854224.673295-CDS-H-canaliculatus_M_contigs9739:3607..37231696854224.673295-CDS-H-canaliculatus_M_contigs9739:3607..3723Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9739 3608..3723 -
1696854224.6894703-CDS-H-canaliculatus_M_contigs9739:4354..44391696854224.6894703-CDS-H-canaliculatus_M_contigs9739:4354..4439Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9739 4355..4439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9739.1.2prot_H-canaliculatus_M_contigs9739.1.2Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9739 3133..4439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9739.1.2

>prot_H-canaliculatus_M_contigs9739.1.2 ID=prot_H-canaliculatus_M_contigs9739.1.2|Name=mRNA_H-canaliculatus_M_contigs9739.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=120bp
QKTIRVRESKFGQALVVETSAHSGGYILGFRLDPAEKLEQVHQELSSLHQ
VHAAAPIMGVDFQEEESPPAMESRTVVATDDNFEVLDTEADGTDAFAAYF
AEANKACDREVANTPKQAG*
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mRNA from alignment at H-canaliculatus_M_contigs9739:3133..4439-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9739.1.2 ID=mRNA_H-canaliculatus_M_contigs9739.1.2|Name=mRNA_H-canaliculatus_M_contigs9739.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1307bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9739:3133..4439- (Hapterophycus canaliculatus Oshoro7m male)
CAGAAAACAATCCGGGTGCGAGAATCTAAGTTCGGGCAGGCCTTGGTGGT GGAAACGAGTGCTCACTCGGGCGGTTACATCCTAGGTGGGTGAGCCAACT CGTGACGAACGGAAATGTATGATGATGAATGATTCTGCTTCTGGTGAAAC GGCGCTTCGAGTTTTTATCCCTCGGACCCTACGGATACAGTCGTCCAATA CTCAAATATCGAGGTCGGAAGGACACATGTTGGAAGAAGACTCGGAGTGT TCGTCTGATGAGGGCTGTCTGTGTATCATTTCCAAGTGGGACAAGTTGCC TATGTTGCCTTTGGACTCAGATGGGTTAGTTGCTCCGAGCAGGATGACAG ACTACTGCAGGAAGTCGTCGGCACAGGTCAAGGAAACGCCGCCCATGCCT CTAGAGAACTCCCGGAGTTTTTCACAAGAATGGGTGGGTGCTACATGTGA TAGTCGACTGTGCGCAGTTTAACTGTACGAGCAACTAGGCACACATCCCA GGGAATCGGCTCTGATATTCGGTGTGCGCTATCGTCATCGAGCTTAGAGT TCAGTCACAGGCAGTTCTCGAGGTCAGCACCTCCTGCGCGAGTGATAGTA GAAGTGGACCCTGCACCTCACTTCACCAACCGCAGCCAAACGATCACCTA GCCAACCGCCAAACAAGCTATATCCATGGTTGCCACCTTCCTTTCGATCC GAATGATGTCGCGCAGGGTTTCGGTTGGACCCAGCGGAGAAGTTGGAACA GGTGCACCAGGAGCTGTCTTCTTTGCACCAAGTGCACGCAGCGGCCCCCA TCATGGGGGTCGACTTCCAAGAGGAGGAAAGCGTGAGTGACGCCGGGCAG GATTTGAGGTGTTTGAAGTGCCTCGCACGGATGGGCAGCAGCAAGATGTG CTTGGGGAAGGAAGTGGTGGTGATGTCGGTTGCTCTTGGTCGTGCAGGTG TTTGCGTATGCCCTGTTTCCCCACGTGTGCTCTTTTTATTGCTGTTGTCG CTGTTATCACTGTTGTCGAATTGGTCCAAATGCTAGGCTGTGGTGTAGTG GGGTCCCCGTGGCTATTTTAATGCGAGTTTTATCAACACCTCTGTGCATG TCTTGTTTTTTCATCTTCTTGGTTGTTGGTCGCCGCTCGGAATGATAGCC TCCGGCGATGGAGTCGCGCACGGTGGTTGCTACCGACGACAACTTTGAGG TGCTGGACACAGAAGCGGACGGAACCGACGCCTTCGCGGCCTACTTCGCC GAAGCCAACAAGGCCTGCGACAGAGAGGTAGCAAATACACCGAAGCAAGC CGGGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9739:3133..4439-

>mRNA_H-canaliculatus_M_contigs9739.1.2 ID=mRNA_H-canaliculatus_M_contigs9739.1.2|Name=mRNA_H-canaliculatus_M_contigs9739.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=360bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9739:3133..4439- (Hapterophycus canaliculatus Oshoro7m male)
CAGAAAACAATCCGGGTGCGAGAATCTAAGTTCGGGCAGGCCTTGGTGGT
GGAAACGAGTGCTCACTCGGGCGGTTACATCCTAGGGTTTCGGTTGGACC
CAGCGGAGAAGTTGGAACAGGTGCACCAGGAGCTGTCTTCTTTGCACCAA
GTGCACGCAGCGGCCCCCATCATGGGGGTCGACTTCCAAGAGGAGGAAAG
CCCTCCGGCGATGGAGTCGCGCACGGTGGTTGCTACCGACGACAACTTTG
AGGTGCTGGACACAGAAGCGGACGGAACCGACGCCTTCGCGGCCTACTTC
GCCGAAGCCAACAAGGCCTGCGACAGAGAGGTAGCAAATACACCGAAGCA
AGCCGGGTAG
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