mRNA_H-canaliculatus_M_contigs9732.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9732.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9732.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9732.1.1 vs.
Match: Thioredoxin (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5S5_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 2.180e-31
Identity = 61/84 (72.62%), Postives = 73/84 (86.90%), Query Frame = 1 
Query:    1 MKNEAELTELLASADSDALIVVKFHATLCGASKAIEGKFKQTAAEFTDLHLDGRQSVTFADVCFDSNRQLCERMGIESVPHVQV 252
            +KNEAELT+LLAS   D L+VVKFHA LC AS+A+EG+F+QTAAEF D+  D +Q VTFADVCFDSNRQLC+RMGI+SVPHVQ+
Sbjct:   89 VKNEAELTKLLAS---DGLVVVKFHAILCDASRAVEGRFRQTAAEFGDM--DNKQ-VTFADVCFDSNRQLCKRMGIKSVPHVQI 166
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BLAST of mRNA_H-canaliculatus_M_contigs9732.1.1 vs.
Match: Thioredoxin/AMP-activated (kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJA4_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 8.330e-17
Identity = 42/84 (50.00%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    1 MKNEAELTELLASADSDALIVVKFHATLCGASKAIEGKFKQTAAEFTDLHLDGRQSVTFADVCFDSNRQLCERMGIESVPHVQV 252
            +++E EL +LL +    +L+VVKF   LC ASKA+E KFKQTAAEF++     +  V FA V   SN  LC++MG+ SVPHVQ+
Sbjct:   58 VRDETELAQLLDATRPSSLVVVKFGKALCKASKAVEEKFKQTAAEFSECD---KTDVQFASVDSGSNWLLCKKMGVRSVPHVQI 138
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BLAST of mRNA_H-canaliculatus_M_contigs9732.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G319_9RHOD)

HSP 1 Score: 53.1 bits (126), Expect = 1.060e-6
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:    7 NEAELTELLASAD-SDALIVVKFHATLCGASKAIEGKFKQTAAEFTDLHLDGRQSVTFADVCFDSNRQLCERMGIESVPHVQV 252
            N  E   LL +A+ +  +IVVKF A  C + K++E KFK+ A  +   +        + +V ++ N+QLCE +G++ +PH QV
Sbjct:   53 NTDEFKSLLDAAEWASNVIVVKFSAGFCKSCKSMEPKFKRLAKVYDKFN--------YFEVSYEKNKQLCEELGVDKLPHFQV 127
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9732.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Thioredoxin2.180e-3172.62domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Thioredoxin/AMP-activated8.330e-1750.00kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
Hypothetical1.060e-634.94protein n=1 Tax=Rhodosorus marinus TaxID=101924 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9732contigH-canaliculatus_M_contigs9732:3616..3873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G5S5
PFAMsThioredoxin
Model size258
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.57e-32
EggNOG OGs2D09X@1|root,2SDCR@2759|Eukaryota
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-12_008930.1
DescriptionThioredoxin
Cds size258
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854224.305141-CDS-H-canaliculatus_M_contigs9732:3615..38731696854224.305141-CDS-H-canaliculatus_M_contigs9732:3615..3873Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9732 3616..3873 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9732.1.1prot_H-canaliculatus_M_contigs9732.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9732 3616..3873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9732.1.1

>prot_H-canaliculatus_M_contigs9732.1.1 ID=prot_H-canaliculatus_M_contigs9732.1.1|Name=mRNA_H-canaliculatus_M_contigs9732.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=86bp
MKNEAELTELLASADSDALIVVKFHATLCGASKAIEGKFKQTAAEFTDLH
LDGRQSVTFADVCFDSNRQLCERMGIESVPHVQVQ*
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mRNA from alignment at H-canaliculatus_M_contigs9732:3616..3873-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9732.1.1 ID=mRNA_H-canaliculatus_M_contigs9732.1.1|Name=mRNA_H-canaliculatus_M_contigs9732.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=258bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9732:3616..3873- (Hapterophycus canaliculatus Oshoro7m male)
ATGAAGAACGAGGCCGAGCTGACGGAGTTGCTAGCCTCGGCGGATTCCGA
TGCTCTCATCGTCGTGAAGTTCCACGCCACCCTGTGCGGTGCTTCAAAGG
CAATCGAGGGGAAGTTTAAGCAGACTGCGGCGGAGTTCACCGATCTCCAC
TTGGATGGACGGCAGAGCGTCACCTTCGCAGATGTTTGCTTCGACAGCAA
CCGCCAGCTATGCGAGAGGATGGGCATCGAGTCGGTGCCACACGTACAGG
TACAGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9732:3616..3873-

>mRNA_H-canaliculatus_M_contigs9732.1.1 ID=mRNA_H-canaliculatus_M_contigs9732.1.1|Name=mRNA_H-canaliculatus_M_contigs9732.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=258bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9732:3616..3873- (Hapterophycus canaliculatus Oshoro7m male)
ATGAAGAACGAGGCCGAGCTGACGGAGTTGCTAGCCTCGGCGGATTCCGA
TGCTCTCATCGTCGTGAAGTTCCACGCCACCCTGTGCGGTGCTTCAAAGG
CAATCGAGGGGAAGTTTAAGCAGACTGCGGCGGAGTTCACCGATCTCCAC
TTGGATGGACGGCAGAGCGTCACCTTCGCAGATGTTTGCTTCGACAGCAA
CCGCCAGCTATGCGAGAGGATGGGCATCGAGTCGGTGCCACACGTACAGG
TACAGTAG
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