mRNA_H-canaliculatus_M_contigs9730.1.2 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9730.1.2
Unique NamemRNA_H-canaliculatus_M_contigs9730.1.2
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9730.1.2 vs.
Match: Pseudouridine (synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFM8_ECTSI)

HSP 1 Score: 654 bits (1687), Expect = 1.950e-233
Identity = 335/386 (86.79%), Postives = 351/386 (90.93%), Query Frame = 1
Query:    1 RCNAVGASSAVAKDVAPEEEVEEEIEFNAEMLTVADGEGGKRLDSFLAARMPEQSRSYFGGLCQLGMVLVGGKRVKKSIKVEEGQEVEVRFIVSPELSIEGEDIPLDILYEDEEIIAVSKPAGMVVHPAPGSWNGTFVNALVFHLEKGAADGGG-GVAEAVFQPMPDGEHNPSLRPGIVHRLDKGTTGVLLAAKNPTMQAKLAELFAERRVGDFVISVSAVVDISKSYLAVCVGNPGNAATIDVPIGRHPRDRQRMVAVPTIQPNIRSRRALSVVTTVAFDGKLSIAEVSIETGRTHQIRVHLQHRRTPVLGDEVYGNKDWNRRLQQSTGMTRPLLHARSLEFKHPTTGEVVSLVAPLPADIEAVVRRIYPQVEDEHPEWLGTTTS 1155
            RCNA  A+ A A+DVAPEEEVEEEI FN EMLTV +GEGGKRLDSFL ARMPEQSRSYFGGLCQLGMVLVGGK  KKS+KVEEGQEVEVRFI+SPELS++GEDIPLDILYED+EIIAVSKPAGMVVHPAPGSWNGTFVNALVFHLEK  ADG G GVAEA FQ +PDGEHNPSLRPGIVHRLDKGTTGVLLAAKNPTMQAKLAELFA+RR             ISKSYLAVCVGNPG AATIDVPIGRHPRDRQRMVAVPTIQPNIRSRRALSVVTTVAFDGKLS+AEVSIETGRTHQIRVHLQHRRTPVLGDEVYGN DWNRRL+QSTG+TRPLLHARSLEFKHP TGEVVSL APLP+D+EAVVRRIYPQVEDEHPEWL  TT+
Sbjct:   75 RCNAGSAALAAARDVAPEEEVEEEIAFNTEMLTVEEGEGGKRLDSFLGARMPEQSRSYFGGLCQLGMVLVGGKTAKKSVKVEEGQEVEVRFIISPELSLQGEDIPLDILYEDDEIIAVSKPAGMVVHPAPGSWNGTFVNALVFHLEKSGADGNGLGVAEAAFQSVPDGEHNPSLRPGIVHRLDKGTTGVLLAAKNPTMQAKLAELFAQRR-------------ISKSYLAVCVGNPGKAATIDVPIGRHPRDRQRMVAVPTIQPNIRSRRALSVVTTVAFDGKLSVAEVSIETGRTHQIRVHLQHRRTPVLGDEVYGNNDWNRRLRQSTGLTRPLLHARSLEFKHPNTGEVVSLAAPLPSDVEAVVRRIYPQVEDEHPEWLQDTTA 447          
BLAST of mRNA_H-canaliculatus_M_contigs9730.1.2 vs.
Match: Pseudouridine (synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH15_9STRA)

HSP 1 Score: 387 bits (993), Expect = 2.930e-129
Identity = 206/361 (57.06%), Postives = 260/361 (72.02%), Query Frame = 1
Query:   64 EEEIEFNAEMLTVADGEGGKRLDSFLAARMPEQSRSYFGGLCQLGMVLVGGKR-VKKSIKVEEGQEVEVRFIVSPELSIEGEDIPLDILYEDEEIIAVSKPAGMVVHPAPGSWNGTFVNALVFHLEKGAADGGGGVAEAVFQPMPDGEHNPSLRPGIVHRLDKGTTGVLLAAKNPTMQAKLAELFAERRVGDFVISVSAVVDISKSYLAVCVGNPGNAATIDVPIGRHPRDRQRMVAVPTIQPNIRSRRALSVVTTVAFDGKLSIAEVSIETGRTHQIRVHLQHRRTPVLGDEVYGNKDWNRRLQQSTGMTRPLLHARSLEFKHPTTGEVVSLVAPLPADIEAVVRRIYPQVEDEHPEWLG 1143
            E+EI F+  +      + G+R+D+FL +++P+QSR+YFG LC  G V V G   VKKS KV  GQ + VRF+ + EL++  EDIPLD+++ED E++A++KP GMVVHPAPG+WNGTFVNAL+ HL K   DG      +V      G+    LRPG+VHRLDKGT+GVLLAAK P MQ +L++LF +R+V              K+YLAVC GNPG+ A IDVPIGRH  +RQ+MVAVP IQP  R+RRALS V   AFDG LS+AEV IETGRTHQIRVHLQHRRTP++GDE+YGN+DWNRRLQ+  G++RPLLHA  LEF HPTTG  + L APLP D+ ++VR +YP   +EHP W G
Sbjct:   47 EDEI-FDVSVFEADLADAGQRIDAFLCSKVPDQSRTYFGDLCTKGCVCVNGSSAVKKSHKVTAGQIISVRFLATAELNLGPEDIPLDVIFEDSELLAIAKPPGMVVHPAPGNWNGTFVNALLHHLSK---DG------SVVSLGESGD----LRPGVVHRLDKGTSGVLLAAKTPIMQKQLSQLFHDRKV-------------RKTYLAVCAGNPGDDA-IDVPIGRHATNRQKMVAVPDIQPGARARRALSHVRCTAFDGSLSVAEVRIETGRTHQIRVHLQHRRTPIVGDELYGNRDWNRRLQKR-GISRPLLHALRLEFTHPTTGAALRLEAPLPEDMASIVRGVYPVAIEEHPGWFG 378          
BLAST of mRNA_H-canaliculatus_M_contigs9730.1.2 vs.
Match: Pseudouridine (synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXK7_HETAK)

HSP 1 Score: 364 bits (935), Expect = 1.620e-120
Identity = 198/359 (55.15%), Postives = 242/359 (67.41%), Query Frame = 1
Query:   76 EFNAEMLTVADGEGGKRLDSFLAARMPEQSRSYFGGLCQLGMVLVGGKRVKKSIKVEEGQEVEVRFIVSPELSIEGEDIPLDILYEDEEIIAVSKPAGMVVHPAPGSWNGTFVNALVFHLEKGAAD---GGGGVAEAVFQPMPDGEHNPSLRPGIVHRLDKGTTGVLLAAKNPTMQAKLAELFAERRVGDFVISVSAVVDISKSYLAVCVGNPGNAATIDVPIGRHPRDRQRMVAVPTIQPNI-RSRRALSVVTTVAFDGKLSIAEVSIETGRTHQIRVHLQHRRTPVLGDEVYGNKDWNRRLQQSTGMTRPLLHARSLEFKHPTTGEVVSLVAPLPADIEAVVRRIYPQVEDEHPEWL 1140
            +   E + V +    KRLD+FL+   PEQSRSYFG LCQ G+V VGG+ VKKS K+  GQEV V F+ + E++ E EDIPLDILYEDE +IAV+KP GMVVHPAPGSW+GTF NAL FH+     D    GGG A               LRPGIVHRLDKGT+GVLLA+KN    AKL+E+FA R+             I K+YLAVCVGNPG    I+  I RHP++RQ+M  +   Q    R+R A+++V  ++FD +LS+A V IETGRTHQIRVHL HRRTPVLGDE+YGN D NRR  +  G+ RPLLHA  LE  HP TGE +SL AP+P D+  V+ +IYPQVEDE P+ L
Sbjct:   63 DLQEETVIVGEEYNKKRLDAFLSDEFPEQSRSYFGSLCQQGLVRVGGRAVKKSEKLRAGQEVSVAFLPTAEMAAEPEDIPLDILYEDEHLIAVAKPPGMVVHPAPGSWSGTFANALAFHMRSRGEDYRAAGGGDA---------------LRPGIVHRLDKGTSGVLLASKNSQCHAKLSEMFASRK-------------IKKTYLAVCVGNPGQDVKIENLIARHPKNRQKMCVIHETQEGAARARTAVTLVDGLSFDSQLSLARVQIETGRTHQIRVHLAHRRTPVLGDELYGNGDQNRRAVKRFGLQRPLLHAYQLELDHPITGEPLSLKAPVPEDMVRVLAKIYPQVEDEQPDML 393          
BLAST of mRNA_H-canaliculatus_M_contigs9730.1.2 vs.
Match: PseudoU_synth_2 (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAN8_9STRA)

HSP 1 Score: 293 bits (751), Expect = 1.790e-91
Identity = 185/428 (43.22%), Postives = 235/428 (54.91%), Query Frame = 1
Query:   67 EEIEFNAEMLTVAD-GEGGKRLDSFLAARMPEQSRSYFGGLCQLGMVLVGGKRVKKSIKVEEGQEVEVRFIVSPE--LSIEGEDIPLDILYEDEEIIAVSKPAGMVVHPAPGSWNGTFVNALVFHLEKGAADGGGGVAEAVFQPMPDGEHNPSLRPGIVHRLDKGTTGVLLAAKNPTMQAKLAELFAERRVGDFVISVSAVVDISKSYLAVCVGNPGN-AATIDVPIGRHPRDRQRMVAVPTIQPN--------------------------------------------------IRSRRALSVVTTVAFDGKLSIAEVSIETGRTHQIRVHLQHRRTPVLGDEVYGNKDWNRRLQQSTGMTRPLLHARSLEFKHPTTGEVVSLVAPLPADIEAVVRRIYPQVED-EHPEWLGTTTSATAAGEEDQT 1185
            +E    A+ + VA+  E   R+D FL  R+   SRS    L   G V V G   +KS+K+ EG E+ V    + E    +E EDIPLD+LYEDE +IAV+K  GMVVHPAPG+ NGTFVNAL+ H+ +     GG + E V             RPG+VHRLDKGT+GVLLAAK     A L+  FAERRV             +K+YLA+ +GNP +  A IDVPIGRHPRDRQRM      + +                                                  +  R+A S V T+AFDG+LS+ EV IETGRTHQIRVHLQHRR PVLGDE+YGN  WN R ++  G+TRP+LHA  L   HP TG+ + LVAP+P D+ +V   I+PQV+  E+ EW        +AG+E  T
Sbjct:   76 DEANITAQFIFVANTSESLIRVDRFLTQRLKGHSRSSVCDLLDRGFVYVNGSPARKSLKIVEGDEIFVLQCATNERLAEVEEEDIPLDVLYEDEHVIAVNKAPGMVVHPAPGNRNGTFVNALLAHVARR----GGEIEEVV---------GSEGRPGVVHRLDKGTSGVLLAAKTARAHAALSSAFAERRV-------------NKTYLAISIGNPSSQGAVIDVPIGRHPRDRQRMAVAMQARTSHTSSFPGASNAQDAVLNYDGYSEDYQEIGYNSTEGEELLMGRGGNSGNTPLTGRKARSTVKTLAFDGRLSVVEVGIETGRTHQIRVHLQHRRNPVLGDELYGNAQWNARARRRWGVTRPMLHALRLVVDHPVTGDPLRLVAPVPPDMLSVAHGIWPQVKGRENEEWWDMVDRGPSAGDEGMT 477          
BLAST of mRNA_H-canaliculatus_M_contigs9730.1.2 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JE35_9STRA)

HSP 1 Score: 288 bits (736), Expect = 3.980e-89
Identity = 180/385 (46.75%), Postives = 220/385 (57.14%), Query Frame = 1
Query:  118 GKRLDSFLAARMPEQSRSYFGGLCQLGMVLVGGKR---------VKKSIKVEEGQEVEVRFIV--SPELSIEGEDIPLDILYEDEEIIAVSKPAGMVVHPAPGSWNGTFVNALVFHLEKGAADGGG---------------GVAEAVFQPMPDGEHNPSLRPGIVHRLDKGTTGVLLAAKNPTMQAKLAELFAERRVGDFVISVSAVVDISKSYLAVCVGNPGNAATIDVPIGRHPRDRQRMVAVPTIQ-----------------PNIRSRRALSVVTTVAFDGKLSIAEVSIETGRTHQIRVHLQHRRTPVLGDEVYGNKDWNRRLQQSTGMTRPLLHARSLEFKHPTTGEVVSLVAPLPADIEAVVRRIYPQVEDEHPEWLG 1143
            G R+D+ L A  P+ SRS  G L   G+V V G            +KS KV  G  + VR I   +PE  I  +DIPLD+L+EDE +I ++K AGMVVHPA G+W+GT VNAL  +L K ++ G G               G   AV     DGE     RPG+VHRLDKGTTGVL+ AK     A L+E FA+RR               K+Y+ V VGNPG   TID PIGRHP  RQRM  VP                    P+   RRALS V T+AFDG+LS+AEV IETGRTHQIRVHLQ RRTPV GD+VYG  DWN+RL ++  + RPLLHA  LE  HP TGE ++  APL  D+  +V  I+PQ  +E P+  G
Sbjct:  150 GSRIDAALGALDPDLSRSLCGTLVSDGLVSVAGVSGGDGTPEVVTRKSHKVSGGDVLAVRRIPDETPE-EIVPQDIPLDVLFEDEHMIVLNKAAGMVVHPAAGNWDGTVVNALAHYLAKVSSHGAGDFVLPEGGTTAEEEDGALGAVLVEGTDGEAQ-KFRPGVVHRLDKGTTGVLVVAKTREALAALSESFAQRRA-------------KKAYVTVTVGNPGKRVTIDRPIGRHPTHRQRMRVVPEPSRKDLIGRRPAPGAPPRTPSQAGRRALSFVDTLAFDGRLSVAEVRIETGRTHQIRVHLQDRRTPVYGDDVYGLPDWNKRLAKTHSVERPLLHAAKLEIDHPVTGERLTFRAPLAQDMAKIVDGIWPQGREERPDLFG 519          
BLAST of mRNA_H-canaliculatus_M_contigs9730.1.2 vs.
Match: Pseudouridine (synthase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A7X5TFN1_9BACT)

HSP 1 Score: 280 bits (716), Expect = 7.370e-89
Identity = 151/340 (44.41%), Postives = 214/340 (62.94%), Query Frame = 1
Query:   88 EMLTVADGEGGKRLDSFLAARMPE-QSRSYFGGLCQLGMVLVGGKRVKKSIKVEEGQEVEVRFIVSPELSIEGEDIPLDILYEDEEIIAVSKPAGMVVHPAPGSWNGTFVNALVFHLEKGAADGGGGVAEAVFQPMPDGEHNPSLRPGIVHRLDKGTTGVLLAAKNPTMQAKLAELFAERRVGDFVISVSAVVDISKSYLAVCVGNPGNAATIDVPIGRHPRDRQRMVAVPTIQPNIRSRRALSVVTTVAFDGKLSIAEVSIETGRTHQIRVHLQHRRTPVLGDEVYGNKDWNRRLQQSTGMTRPLLHARSLEFKHPTTGEVVSLVAPLPADIEAVVRRI 1104
            E + + + E G+RLD  LA R  E +SR+YF  L +   VL+ G  +KK +K + G EVE+ F+++PE+ +  E IPLD+LYEDE+I+ V+KP+GMVVHPAPG+W+GTFVNAL++H +               Q   D +H   LRPGIVHRLDK T+GVL++AK    Q +L E+FA R             ++ K YLA+C+G+PG    I++PIGRHP+ RQRM  + +       R A ++  T+A DG LS+ ++ + TGRTHQIRVH+QH  TPVLGD  YGN   N++ +    +TR LLHAR + F HP T   +  VA +P+D+   ++R+
Sbjct:    7 ETIIITEDEAGQRLDKILANRFKEVRSRTYFQSLIRDHNVLLNGSPIKKQVKPQVGDEVEILFVLTPEIDVTPEPIPLDVLYEDEDILVVNKPSGMVVHPAPGNWSGTFVNALLYHCK---------------QLPSDSQH---LRPGIVHRLDKETSGVLVSAKTSQAQQRLVEMFASR-------------EVYKEYLAICLGDPGEGE-INLPIGRHPKQRQRMTVLDS-----GGRNARTIFRTLASDGTLSLVDIILATGRTHQIRVHMQHHGTPVLGDSTYGNIQANKKFK----VTRQLLHARKIRFTHPITKREMEFVAEIPSDMATFIQRL 305          
BLAST of mRNA_H-canaliculatus_M_contigs9730.1.2 vs.
Match: Pseudouridine (synthase n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7V9UFC7_9BACT)

HSP 1 Score: 280 bits (715), Expect = 1.390e-88
Identity = 153/337 (45.40%), Postives = 215/337 (63.80%), Query Frame = 1
Query:   94 LTVADGEGGKRLDSFLAARMPE-QSRSYFGGLCQLGMVLVGGKRVKKSIKVEEGQEVEVRFIVSPELSIEGEDIPLDILYEDEEIIAVSKPAGMVVHPAPGSWNGTFVNALVFHLEKGAADGGGGVAEAVFQPMPDGEHNPSLRPGIVHRLDKGTTGVLLAAKNPTMQAKLAELFAERRVGDFVISVSAVVDISKSYLAVCVGNPGNAATIDVPIGRHPRDRQRMVAVPTIQPNIRSRRALSVVTTVAFDGKLSIAEVSIETGRTHQIRVHLQHRRTPVLGDEVYGNKDWNRRLQQSTGMTRPLLHARSLEFKHPTTGEVVSLVAPLPADIEAVVRR 1101
            + +++ E G+RLD  LA R  E +SR+YF  L +   VLV G++VKK  K E G EVEV FI++PE++++ E+IPLDI+YED+ II ++KPAGMVVHPA G+W GTFVNAL++H ++            + +         +LRPGIVHRLDK TTG+LLAAK    Q KL ELF+ R+             I K Y A+CVG PG+  TID PIGRHP  R+ M  +P        ++A+S+  T+ ++ +LS   + + TGRTHQIRVHL+H  TPVLGD +YG++    R   +  + R +LHA  L+F+HPTTG+++   APLP ++E ++ R
Sbjct:    8 IIISETEAGQRLDKILADRFKELKSRTYFQYLIEEQKVLVNGEQVKKRFKPEFGDEVEVHFILTPEITLQAENIPLDIIYEDDSIILINKPAGMVVHPAAGNWTGTFVNALLYHCQE------------IEKLSRSANSTGNLRPGIVHRLDKETTGLLLAAKTEEAQRKLVELFSNRK-------------IIKEYRAICVGKPGDI-TIDQPIGRHPVQRKMMTVLPH-----GGKKAISICKTLNYNSELSFVNIVLVTGRTHQIRVHLKHLNTPVLGDIIYGSE----RANSTFNVNRQMLHAHYLQFEHPTTGKLLEFYAPLPQEMEQILVR 309          
BLAST of mRNA_H-canaliculatus_M_contigs9730.1.2 vs.
Match: Pseudouridine (synthase n=1 Tax=Waddliaceae bacterium TaxID=2026802 RepID=A0A2E3M0J3_9BACT)

HSP 1 Score: 279 bits (713), Expect = 1.770e-88
Identity = 154/336 (45.83%), Postives = 210/336 (62.50%), Query Frame = 1
Query:  100 VADGEGGKRLDSFLAARMPEQSRSYFGGLCQLGMVLVGGKRVKKSIKVEEGQEVEVRFIVSPELSIEGEDIPLDILYEDEEIIAVSKPAGMVVHPAPGSWNGTFVNALVFHLEKGAADGGGGVAEAVFQPMPDGEHNPSLRPGIVHRLDKGTTGVLLAAKNPTMQAKLAELFAERRVGDFVISVSAVVDISKSYLAVCVGNPGNAATIDVPIGRHPRDRQRMVAVPTIQPNIRSRRALSVVTTVAFDGKLSIAEVSIETGRTHQIRVHLQHRRTPVLGDEVYGNKDWNRRLQQSTGMTRPLLHARSLEFKHPTTGEVVSLVAPLPADIEAVVRRIY 1107
            V + E G+RLD  L+ R  EQSR+YF  L    +VLV G+ V+K   ++   EVEV FI+SPELS+E EDIPLDI+YEDE ++A++KPAG+VVHP  G+W+GTF NAL++H ++                +PD      LRPGIVHRLDK T+G+LLAAK    Q  L ELF+ R+             I K Y A+C+GNPGN   I+ PIGRHP  R++M  + +       R A ++  T+AF+GKLS+ ++ +ETGRTHQIRVH+ H  TP+LGDE YG K  N++ +    + R LLHA+ LE +HP T + + L A LP D   +  +I+
Sbjct:   11 VTEEEAGERLDKVLSKRYTEQSRTYFQYLITEKLVLVNGEPVRKRTALQTNDEVEVEFILSPELSLEPEDIPLDIVYEDEYLLAINKPAGLVVHPGAGNWSGTFANALLYHCKQ----------------VPDA--GDQLRPGIVHRLDKDTSGLLLAAKTNMSQQALVELFSSRK-------------IYKEYWAICLGNPGNGR-IEAPIGRHPIHRKKMAVIES------GRSASTIYETIAFNGKLSLVKLILETGRTHQIRVHMLHLGTPILGDETYGRKQMNQKYK----INRQLLHAKHLELEHPITKKNLKLEASLPEDFSKITEQIH 304          
BLAST of mRNA_H-canaliculatus_M_contigs9730.1.2 vs.
Match: Pseudouridine (synthase n=1 Tax=Chlamydiales bacterium SCGC AG-110-P3 TaxID=1871323 RepID=A0A212KRQ0_9CHLA)

HSP 1 Score: 278 bits (710), Expect = 1.020e-87
Identity = 156/338 (46.15%), Postives = 215/338 (63.61%), Query Frame = 1
Query:   94 LTVADGEGGKRLDSFLAARMP-EQSRSYFGGLCQLGMVLVGGKRVKKSIKVEEGQEVEVRFIVSPELSIEGEDIPLDILYEDEEIIAVSKPAGMVVHPAPGSWNGTFVNALVFHLEKGAADGGGGVAEAVFQPMPDGEHNPSLRPGIVHRLDKGTTGVLLAAKNPTMQAKLAELFAERRVGDFVISVSAVVDISKSYLAVCVGNPGNAATIDVPIGRHPRDRQRMVAVPTIQPNIRSRRALSVVTTVAFDGKLSIAEVSIETGRTHQIRVHLQHRRTPVLGDEVYGNKDWNRRLQQSTGMTRPLLHARSLEFKHPTTGEVVSLVAPLPADIEAVVRRI 1104
              V+D E G RLD  L+ R   +QSRSYF  L +  +VL+ G+ VKK ++ E G EVEV F ++PE+++  E++PL++LYED+ +I ++K AGMVVHPAPG+W GTFVNAL++H       G    AEA            SLRPGIVHRLDK T+G L+AAKN  +Q +L ELF+ R+             I K Y+AVCVGNPG+  T+DVPIGRHP  R++M  + +       R A++  +T+A   +LS+ ++ +ETGRTHQIRVHL+HR  P+LGD VYG +  NR+   S    R +LHA  L F HP TGE + ++AP+P D+   + R+
Sbjct:   24 FVVSDSEAGSRLDKLLSQRYQGQQSRSYFQKLIRNELVLLNGRPVKKQVRPESGDEVEVEFALTPEVNLHPENLPLEVLYEDDHLIIINKSAGMVVHPAPGNWTGTFVNALLYHC------GDSFQAEA------------SLRPGIVHRLDKNTSGCLVAAKNLHVQQRLVELFSLRK-------------IYKEYIAVCVGNPGDG-TVDVPIGRHPVHRKQMAVIES-----GGRHAVTHYSTLAHKDRLSVVKLVLETGRTHQIRVHLRHRGMPILGDCVYGTEAMNRQYSAS----RQMLHAYRLRFMHPITGEKLDVMAPIPVDMRLQIARV 320          
BLAST of mRNA_H-canaliculatus_M_contigs9730.1.2 vs.
Match: Pseudouridine (synthase n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7W1U2J2_9BACT)

HSP 1 Score: 276 bits (705), Expect = 2.940e-87
Identity = 160/340 (47.06%), Postives = 210/340 (61.76%), Query Frame = 1
Query:   88 EMLTVADGEGGKRLDSFLAARMPE-QSRSYFGGLCQLGMVLVGGKRVKKSIKVEEGQEVEVRFIVSPELSIEGEDIPLDILYEDEEIIAVSKPAGMVVHPAPGSWNGTFVNALVFHLEKGAADGGGGVAEAVFQPMPDGEHNPSLRPGIVHRLDKGTTGVLLAAKNPTMQAKLAELFAERRVGDFVISVSAVVDISKSYLAVCVGNPGNAATIDVPIGRHPRDRQRMVAVPTIQPNIRSRRALSVVTTVAFDGKLSIAEVSIETGRTHQIRVHLQHRRTPVLGDEVYGNKDWNRRLQQSTGMTRPLLHARSLEFKHPTTGEVVSLVAPLPADIEAVVRRI 1104
            E+L V D E G+RLD  LA R    +SR+YF  L + G VL+ G   KK IK   G E++V F+++PE+ +  E IPLDI++EDE IIA++KP GMVVHPA G+W GTFVNAL++H ++            +   +P  E +P LRPGIVHRLDK T+G+LLAAK P    +L  +F+ER+             I K YLAVC+GNPGN  TI  PIGRHP  R+ M  V T +P I   +AL V        K+S+  V +ETGRTHQIRVH +HR TP+LGD VYG++  NR      G+ R LLHA  L+F HP     V L AP+P+D++A   ++
Sbjct:    5 ELLVVQDEEAGERLDKILARRFDGIKSRTYFQMLIEEGHVLLNGLSAKKRIKPTAGDEIQVNFVLTPEIGLSPEAIPLDIIFEDEHIIAINKPVGMVVHPAVGNWTGTFVNALLYHCQQ------------LGLSLP--ESSP-LRPGIVHRLDKDTSGLLLAAKTPLAHQRLVAMFSERK-------------IHKEYLAVCLGNPGNL-TISAPIGRHPVHRKLMSVVETGKPAISHLKALEV------KEKISLVRVILETGRTHQIRVHFKHRGTPILGDAVYGSESANREY----GIHRQLLHAHRLQFMHPIHNTPVELTAPIPSDLKAFFPKV 305          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9730.1.2 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Pseudouridine1.950e-23386.79synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFM... [more]
Pseudouridine2.930e-12957.06synthase n=1 Tax=Tribonema minus TaxID=303371 RepI... [more]
Pseudouridine1.620e-12055.15synthase n=1 Tax=Heterosigma akashiwo TaxID=2829 R... [more]
PseudoU_synth_21.790e-9143.22domain-containing protein n=2 Tax=Monodopsidaceae ... [more]
Hypothetical3.980e-8946.75protein n=1 Tax=Odontella aurita TaxID=265563 RepI... [more]
Pseudouridine7.370e-8944.41synthase n=1 Tax=Chlamydiae bacterium TaxID=208152... [more]
Pseudouridine1.390e-8845.40synthase n=1 Tax=Parachlamydiaceae bacterium TaxID... [more]
Pseudouridine1.770e-8845.83synthase n=1 Tax=Waddliaceae bacterium TaxID=20268... [more]
Pseudouridine1.020e-8746.15synthase n=1 Tax=Chlamydiales bacterium SCGC AG-11... [more]
Pseudouridine2.940e-8747.06synthase n=1 Tax=Parachlamydiaceae bacterium TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9730contigH-canaliculatus_M_contigs9730:176..4648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LFM8
PFAMsPseudoU_synth_2,S4
Model size1200
Max annot lvl2759|Eukaryota
KEGG koko:K06180
Hectar predicted targeting categoryother localisation
Exons6
Evalue3.2e-234
EggNOG OGsCOG0564@1|root,KOG1919@2759|Eukaryota
Ec32 ortholog descriptionPseudouridine synthase, RluD
Ec32 orthologEc-04_001540.1
EC5.4.99.23
Descriptionpseudouridine synthase activity
Cds size1200
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9730.1.2prot_H-canaliculatus_M_contigs9730.1.2Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9730 176..4648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854224.208958-CDS-H-canaliculatus_M_contigs9730:175..2351696854224.208958-CDS-H-canaliculatus_M_contigs9730:175..235Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9730 176..235 +
1696854224.2266936-CDS-H-canaliculatus_M_contigs9730:1174..14351696854224.2266936-CDS-H-canaliculatus_M_contigs9730:1174..1435Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9730 1175..1435 +
1696854224.2382298-CDS-H-canaliculatus_M_contigs9730:1796..21411696854224.2382298-CDS-H-canaliculatus_M_contigs9730:1796..2141Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9730 1797..2141 +
1696854224.2497935-CDS-H-canaliculatus_M_contigs9730:2306..25491696854224.2497935-CDS-H-canaliculatus_M_contigs9730:2306..2549Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9730 2307..2549 +
1696854224.2612288-CDS-H-canaliculatus_M_contigs9730:3447..36511696854224.2612288-CDS-H-canaliculatus_M_contigs9730:3447..3651Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9730 3448..3651 +
1696854224.2720017-CDS-H-canaliculatus_M_contigs9730:4561..46481696854224.2720017-CDS-H-canaliculatus_M_contigs9730:4561..4648Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9730 4562..4648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9730.1.2

>prot_H-canaliculatus_M_contigs9730.1.2 ID=prot_H-canaliculatus_M_contigs9730.1.2|Name=mRNA_H-canaliculatus_M_contigs9730.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=400bp
RCNAVGASSAVAKDVAPEEEVEEEIEFNAEMLTVADGEGGKRLDSFLAAR
MPEQSRSYFGGLCQLGMVLVGGKRVKKSIKVEEGQEVEVRFIVSPELSIE
GEDIPLDILYEDEEIIAVSKPAGMVVHPAPGSWNGTFVNALVFHLEKGAA
DGGGGVAEAVFQPMPDGEHNPSLRPGIVHRLDKGTTGVLLAAKNPTMQAK
LAELFAERRVGDFVISVSAVVDISKSYLAVCVGNPGNAATIDVPIGRHPR
DRQRMVAVPTIQPNIRSRRALSVVTTVAFDGKLSIAEVSIETGRTHQIRV
HLQHRRTPVLGDEVYGNKDWNRRLQQSTGMTRPLLHARSLEFKHPTTGEV
VSLVAPLPADIEAVVRRIYPQVEDEHPEWLGTTTSATAAGEEDQTISGTD
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mRNA from alignment at H-canaliculatus_M_contigs9730:176..4648+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9730.1.2 ID=mRNA_H-canaliculatus_M_contigs9730.1.2|Name=mRNA_H-canaliculatus_M_contigs9730.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4473bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9730:176..4648+ (Hapterophycus canaliculatus Oshoro7m male)
CGATGCAATGCAGTGGGTGCTTCATCTGCTGTAGCGAAAGATGTGGCGCC GGAAGAAGAGGTGAGCGACATGCTGCTCACGAGCCTTGGTCTAAAGTGGT TGATGCAGACCAGCAGCCTCCGCAGTGTGAAGTACCCCAAGACCCCAAGT CAAATCCTACCCACCGGCTGCGAGTTGAACTTCGACTTTCAGAACTGCTG CAGACAAGAGTCCCGCAGAGATAAACTTGCATTTCGCTTCACCAGGTGTA GGAAACAAAGCGCGACTGTAGAGGACAGGCACTGCGAAGGGCCCACTCAC CAGCTGAAGTGCATGCAATCCTCCAAGCATTCATGAGGTGATAAGGTGGC CATGTACAAGTCCACGGACCTTTTCCCCCGTGATACCTTGCTCGGCCGAG GTATCGGCTATGCTGCTGTTGGCAAGGGCGCCAGGAGCAGCAGGGCGCAC ACCATGCACAAGATCTCGGGAGATCGGACTCTCGCTGTATCGCCCACCAA CCCTCCTTAGTTTCCTATCTTAATGCTCCTGCCGTACAATCGTCTAGAGA GAATGCGACAGGCTACGCGATGCCTCCCTTTCGACGCTCAATCCGTCGTG GGGAAGTAGACACAAGGCACAGCCGTGATACTGTAGCGCCCTTTGCCGGT GCACCCTCACGTGAGGCATCAAATCCAATCGCTGCCGCAAAGCATGTTCC GCATGCCTTCAGCTGACGCTACGGCTAGCGTCACCGCATTCTCACCAATT TCCCAAGAATAAGTGCGGTCCTTTCGGTCAAAGTTGAACCCGATCATACT TTTAGATTTCTGGGTCGCTTATTTCTGGAACAGCATACGATACAAGCACG CAAAACACATTTACACACCAAGTTCCGACAACGATCGGTGCAAAGAGAAG TTACACAGGGCGGCGATGTGTATCCGGTCGTCCCATGCGAGCTCTCTGAA ATCATCCACAACGCGTCCCCACGACATCCCGCCGCCCGTTGGCCGTCAGG TCGAGGAAGAAATCGAGTTCAACGCGGAGATGCTAACCGTAGCAGACGGA GAGGGAGGCAAGCGCCTGGATTCCTTTCTCGCGGCCCGCATGCCCGAGCA ATCCAGGAGCTATTTCGGGGGGCTCTGCCAGCTGGGAATGGTGCTGGTGG GAGGGAAGCGGGTTAAGAAGAGCATCAAGGTGGAGGAGGGCCAGGAGGTG GAGGTTAGGTTTATCGTCAGCCCGGAGCTGTCCATCGAGGGGGAGGACAT CCCGCTAGACGTGAGGCTTTGACGAATGTTTTTGCGTCGCTCCTTCGTCG ACTCGTCTGCATCAAAGTAGAGTGGGTGCAAGCTGCAGTGGCTGCTTGTG CCTGTCGCTGTTGCTTTGGCCTGGCCACATCACTGCCGCGATCTGCCAAA GCTCGATAAGGGACAGTAGCAGCGTCTCTGCCATCCTGTCGCAGCCTTGA GCCCCCGCCTTACGAAGACAGCCGCTCAGTCGTACGTCCGAGCTTGCACG CCACGAAAAAGCCTTTCGAGGCACCCAATACACTGCGCTGACCATACGTG ACACCCGCTCCCCAACTCCCGCTCTAAACACGCCTCTCCTACCCCACGCA ACAACGGCGTCGGCACGACAGATACTTTACGAGGATGAGGAAATCATCGC CGTTAGCAAACCGGCAGGGATGGTGGTCCACCCCGCACCCGGGAGCTGGA ACGGCACCTTCGTGAACGCCCTGGTTTTCCACTTGGAAAAGGGGGCCGCG GACGGGGGGGGCGGGGTCGCAGAGGCGGTTTTCCAGCCGATGCCGGATGG GGAACACAACCCCAGCCTGAGGCCGGGGATTGTGCACCGCTTGGACAAGG GGACGACGGGGGTTCTGCTTGCGGCGAAGAACCCAACGATGCAGGCCAAG CTGGCCGAGCTGTTCGCGGAGCGAAGGGTGGGTGATTTCGTGATTTCCGT GTCCGCTGTTGTTGACGTTGTTGTCGTTGTCGCTGGCAAACAGAACCACA CGTTCCGTGAGCTGCAGGTGCGTCGATTTCGAGAAGCAGTGTCCCACGCT CTGATCGAGTTCCCCAAGCAACCCTCGCGCGCGCATCCCCCCCCCCCCCA ACGAAGCCTCTCCCTCTCGTAACCGGCGCAGATATCCAAGTCCTACCTCG CCGTTTGCGTGGGCAATCCGGGTAACGCTGCCACGATAGACGTGCCGATC GGGCGGCATCCCAGGGACCGGCAGCGAATGGTGGCGGTGCCGACTATCCA GCCGAACATCCGGTCGCGGAGGGCCCTGTCTGTCGTGACGACGGTGGCGT TCGACGGGAAGCTGAGCATCGCGGAGGTGTCGATCGAGACGGGACGGACG CACCAGATCAGGGTGCACTTGCAGGTTCGTCGGAGAATGCGGCCGTCCAT TGTTGTCCTTGTCCATGTATTACTGCTGCTTCTGTCAGTCTCTTGTTTTG CCTCCCCAAAGCACTCTGCCGGAAATCTTTGTTTGTGGTGTTCTCAAGGC ACAGGCATCGTCGCGGGTGGGAACCTGTGCGTTTGTTACTTCGTTCGGTC GAATCCGTGCCGGGCTTTTCACCACCGTAGCAGGCGTCGCGGCATCACGG CTGTTGTTGTTGCGTATGTGGAAGATGGTGTTTAGCATGTGTTACCTCTT GATGATGTTCGACTCGTCCCGGTACAGTACCTCCACCCACCTCATGTACA CCGAAGCTTCCGAGTAGAGAGCAGATTGATTCACCGATGCACTCACACCC TTGCCCGCGCCATGCCCGACAGTTACAATACCCCCCCTGGAACCACACAT CTCCGATATCACCGAAGGTGCTTCGATGGCTGTTATCACCTCTCTGTCGT CGATACTTCGAGACACGAGAGATCTCGACCAGCAGCGGGAAATCGATCGA TTCTACTCCTTTTCGAAACCTAGCGCAGATATGCAGCCCGGTCCACAACA GTATTCAGTATAAGTATTAATTGTTTCCCTGGCTGAGAAGTAGTTCTACC ATCCGGTGCGGAGCGCACGCTCCCTCGGTTCGTGTACAGAGAGATAGGCA GGCCAAACATATACGTCGAAAACCACCAAGGAGCCCCCCCCCCCTCCCCC GCAGATCTTTCCGTCCCTTGATGGATGCGAGGTCAATGGTGATATGACAT GAGTACTCCAAGGAAACAATGTACCCCCCCACCCACTCCCAAACTCAATT TTTTGTTCGCCTTGTCTGTTCTCGGTCTAATTGCTCCTGCTCCTGCCACA TGATGGCCCGTCGCACTCCCAGCACCGACGCACGCCCGTGTTGGGGGACG AGGTCTACGGTAACAAGGATTGGAACCGGAGGCTGCAGCAGAGCACGGGG ATGACCAGGCCCCTGCTTCACGCGAGGTCCCTGGAGTTCAAGCACCCCAC CACTGGGGAGGTGGTGTCCCTGGTGGCGCCCCTTCCCGCAGACATCGAGG CAGTCGTGAGGAGAATATACCCGCAGGTGGGAGACCGCTGTTTTCGCTCC TGTGGGTGGTGATGGTGGTGCTGCTGCTGCTGCTTTTGCTGTTGCTGCTG CGGAGTGTGCTTTACCGCACTTTGCGCAGTCTTGGAGCTGATTGCTCAGC CACCTGGGATCCGAGTTTGATCCGTTTTTTTTCTTTGCGTTCGGGTGAGT CAGCGGATGCTCTTGACGCTCGTTGACTAGTTGATCCGTGTACACCTCGC TCGCTGTCCCTCTCCAAATTCGGAGCGAAGTTTAACGAGGGCGTGCGGTG TGCGACTGCGATAGGCATGGTGAGCCCGCACAACACTTTCATCTGCACTG GCACATTGACAATTTTTTTCGACGGCGTGGCGTCCTACGGTTGTTGTATG TGTTACCTCAAGAACCGGGGTATAAGCCCAAGGGGTAGCTTTCCTTGTCC GACATGTCGGCGACCGGGATGGTCAGGGTATTTAAGGATCGATTTTCGGG AAGTCCTGGGGAAGATCTTCCAGGTGGCACCCTCTGGGACTTGGGCACCC TCCCAGTTGTCGCGATGTAGGGCCGGGAACAACTATCGCACCCCCTGTCC CAAGACCCCGATTCCTGAGGTATTTTGTGTCCTGGGGGTAGGTTCCTGGG TTGTTTCATTCCCAGATCTGCCAGCGGCGGGTACAACTCGGAGACCTTGG CATCCACAGCACCACGCCCACCCCCTGGGATGAACACCAATGCTCCACCT GATCGATCGCACTCGACCCGATGCGAGGGGATAAGGCAACTACCTGTTCC CTAGTGTCCCTAGGGCAAGAGTGCTTTTTTTTCCATTTTCGTCGTCCTGT GTGAGCGGTCCGTTAGGGCCGGTCGCGACTCTGAACGCCGTTTGCTCCCC TTCACCGCTAGTAATTCTCACTGGTCTGCTCTGCAGGTGGAGGACGAGCA CCCGGAGTGGCTAGGCACGACGACTTCAGCAACAGCAGCAGGGGAAGAAG ACCAGACTATCAGTGGAACGGAT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9730:176..4648+

>mRNA_H-canaliculatus_M_contigs9730.1.2 ID=mRNA_H-canaliculatus_M_contigs9730.1.2|Name=mRNA_H-canaliculatus_M_contigs9730.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1200bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9730:176..4648+ (Hapterophycus canaliculatus Oshoro7m male)
CGATGCAATGCAGTGGGTGCTTCATCTGCTGTAGCGAAAGATGTGGCGCC
GGAAGAAGAGGTCGAGGAAGAAATCGAGTTCAACGCGGAGATGCTAACCG
TAGCAGACGGAGAGGGAGGCAAGCGCCTGGATTCCTTTCTCGCGGCCCGC
ATGCCCGAGCAATCCAGGAGCTATTTCGGGGGGCTCTGCCAGCTGGGAAT
GGTGCTGGTGGGAGGGAAGCGGGTTAAGAAGAGCATCAAGGTGGAGGAGG
GCCAGGAGGTGGAGGTTAGGTTTATCGTCAGCCCGGAGCTGTCCATCGAG
GGGGAGGACATCCCGCTAGACATACTTTACGAGGATGAGGAAATCATCGC
CGTTAGCAAACCGGCAGGGATGGTGGTCCACCCCGCACCCGGGAGCTGGA
ACGGCACCTTCGTGAACGCCCTGGTTTTCCACTTGGAAAAGGGGGCCGCG
GACGGGGGGGGCGGGGTCGCAGAGGCGGTTTTCCAGCCGATGCCGGATGG
GGAACACAACCCCAGCCTGAGGCCGGGGATTGTGCACCGCTTGGACAAGG
GGACGACGGGGGTTCTGCTTGCGGCGAAGAACCCAACGATGCAGGCCAAG
CTGGCCGAGCTGTTCGCGGAGCGAAGGGTGGGTGATTTCGTGATTTCCGT
GTCCGCTGTTGTTGACATATCCAAGTCCTACCTCGCCGTTTGCGTGGGCA
ATCCGGGTAACGCTGCCACGATAGACGTGCCGATCGGGCGGCATCCCAGG
GACCGGCAGCGAATGGTGGCGGTGCCGACTATCCAGCCGAACATCCGGTC
GCGGAGGGCCCTGTCTGTCGTGACGACGGTGGCGTTCGACGGGAAGCTGA
GCATCGCGGAGGTGTCGATCGAGACGGGACGGACGCACCAGATCAGGGTG
CACTTGCAGCACCGACGCACGCCCGTGTTGGGGGACGAGGTCTACGGTAA
CAAGGATTGGAACCGGAGGCTGCAGCAGAGCACGGGGATGACCAGGCCCC
TGCTTCACGCGAGGTCCCTGGAGTTCAAGCACCCCACCACTGGGGAGGTG
GTGTCCCTGGTGGCGCCCCTTCCCGCAGACATCGAGGCAGTCGTGAGGAG
AATATACCCGCAGGTGGAGGACGAGCACCCGGAGTGGCTAGGCACGACGA
CTTCAGCAACAGCAGCAGGGGAAGAAGACCAGACTATCAGTGGAACGGAT
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