mRNA_H-canaliculatus_M_contigs9719.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9719.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9719.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9719.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJT3_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.560e-32
Identity = 61/110 (55.45%), Postives = 76/110 (69.09%), Query Frame = 1 
Query:    7 RCENDPDCEFGGLGCNAENDELCRYCGF-EPFADCLVSE-TLAPAPTPAPTADPNRVPCSSWCLDSARLTCIDDPTCPNGFVGVGSGIGCNATGDTYCRFCGF-DPFDDC 327
            RC+N+  CE GG+GCNA++D LC++C    P+ +C     T APAP+PAPT DP+ V CSS CL+S    C DDP+CP      G+GIGCNATGD YCRFCGF + F DC
Sbjct:  206 RCQNNEMCETGGIGCNAQDDPLCQFCDLGAPYVECDEERPTEAPAPSPAPTLDPDYVECSSRCLESEDFPCFDDPSCPRD----GNGIGCNATGDFYCRFCGFLEEFVDC 311
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BLAST of mRNA_H-canaliculatus_M_contigs9719.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN4_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 1.690e-30
Identity = 60/110 (54.55%), Postives = 76/110 (69.09%), Query Frame = 1 
Query:    7 RCENDPDCEFGGLGCNAENDELCRYCGF-EPFADCLVSE-TLAPAPTPAPTADPNRVPCSSWCLDSARLTCIDDPTCPNGFVGVGSGIGCNATGDTYCRFCGF-DPFDDC 327
            RC+N+  CE GG+GCNA++D LC++C    P+ +C     T APAP+PAPT DP+ V CSS CL+S    C DDP+CP      G+GIGCNA+GD YCRFCGF + F DC
Sbjct:  264 RCQNNEMCETGGIGCNAQDDPLCQFCDLGAPYVECDEERPTEAPAPSPAPTLDPDYVECSSRCLESEDFPCFDDPSCPRD----GNGIGCNASGDFYCRFCGFLEEFVDC 369
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BLAST of mRNA_H-canaliculatus_M_contigs9719.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6N068_RETFI)

HSP 1 Score: 53.1 bits (126), Expect = 8.140e-6
Identity = 33/101 (32.67%), Postives = 45/101 (44.55%), Query Frame = 1 
Query:   10 CENDPDCEFGGLGCNAENDELCRYCGFEPFADCLVSETLAPAPTPAPTADPNRVPCSSWCLDSA--RLTCIDDPTCPNGFVGVGSGIGCNATGDTYCRFCG 306
            C  D  C+ G LGCNA ++  CRYCG   + +    E L                  S C  SA  +++C  D TC +G       +GCNA  +  CR+CG
Sbjct:   27 CYVDETCKDGMLGCNANSNLTCRYCGSGSYVNITCPEKL------------------SNCCKSAGGQVSCYVDKTCKDGM------LGCNANSNLTCRYCG 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9719.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.560e-3255.45protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.690e-3054.55protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.140e-632.67protein n=1 Tax=Reticulomyxa filosa TaxID=46433 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9719contigH-canaliculatus_M_contigs9719:3645..3971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size327
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854223.7338579-CDS-H-canaliculatus_M_contigs9719:3644..39711696854223.7338579-CDS-H-canaliculatus_M_contigs9719:3644..3971Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9719 3645..3971 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9719.1.1prot_H-canaliculatus_M_contigs9719.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9719 3645..3971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9719.1.1

>prot_H-canaliculatus_M_contigs9719.1.1 ID=prot_H-canaliculatus_M_contigs9719.1.1|Name=mRNA_H-canaliculatus_M_contigs9719.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=109bp
NGRCENDPDCEFGGLGCNAENDELCRYCGFEPFADCLVSETLAPAPTPAP
TADPNRVPCSSWCLDSARLTCIDDPTCPNGFVGVGSGIGCNATGDTYCRF
CGFDPFDDC
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mRNA from alignment at H-canaliculatus_M_contigs9719:3645..3971-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9719.1.1 ID=mRNA_H-canaliculatus_M_contigs9719.1.1|Name=mRNA_H-canaliculatus_M_contigs9719.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=327bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9719:3645..3971- (Hapterophycus canaliculatus Oshoro7m male)
AACGGCCGCTGCGAGAACGACCCGGACTGCGAGTTCGGCGGGCTCGGGTG
TAACGCCGAGAACGACGAGCTCTGCCGTTACTGCGGGTTCGAGCCGTTCG
CGGACTGCCTCGTGAGCGAGACGCTGGCTCCGGCGCCCACCCCGGCGCCG
ACGGCCGACCCCAACCGTGTGCCGTGCAGCTCATGGTGCCTCGACTCCGC
CCGGCTCACCTGCATCGACGACCCGACGTGTCCTAACGGCTTCGTCGGCG
TCGGCAGCGGGATCGGCTGCAACGCCACCGGGGACACGTACTGCCGGTTC
TGCGGCTTCGACCCGTTCGACGACTGC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9719:3645..3971-

>mRNA_H-canaliculatus_M_contigs9719.1.1 ID=mRNA_H-canaliculatus_M_contigs9719.1.1|Name=mRNA_H-canaliculatus_M_contigs9719.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=327bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9719:3645..3971- (Hapterophycus canaliculatus Oshoro7m male)
AACGGCCGCTGCGAGAACGACCCGGACTGCGAGTTCGGCGGGCTCGGGTG
TAACGCCGAGAACGACGAGCTCTGCCGTTACTGCGGGTTCGAGCCGTTCG
CGGACTGCCTCGTGAGCGAGACGCTGGCTCCGGCGCCCACCCCGGCGCCG
ACGGCCGACCCCAACCGTGTGCCGTGCAGCTCATGGTGCCTCGACTCCGC
CCGGCTCACCTGCATCGACGACCCGACGTGTCCTAACGGCTTCGTCGGCG
TCGGCAGCGGGATCGGCTGCAACGCCACCGGGGACACGTACTGCCGGTTC
TGCGGCTTCGACCCGTTCGACGACTGC
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