mRNA_H-canaliculatus_M_contigs9701.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9701.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9701.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9701.1.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 9.780e-17
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 LRCDKGTEYPSDESKTICLDSGINIEYTATHTPLQNGVSEHDGQTLAKIVRYLIKDGTFP 180
            +RCD+G E  ++E  T C+DSGI IEY AT+TP QNGVSE DGQTL  I R L+K+G FP
Sbjct:  232 IRCDRGRENVANEFTTYCMDSGITIEYAATNTPQQNGVSERDGQTLTTITRCLMKNGAFP 291
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9701.1.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCI9_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 6.740e-15
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 LRCDKGTEYPSDESKTICLDSGINIEYTATHTPLQNGVSEHDGQTLAKIVRYLIKDGTFP 180
            LRCDKG E P +E +  C +S I +E+ AT+TP + GVSE DGQTLA + R L++DG FP
Sbjct:  183 LRCDKGGENPGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFP 242
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9701.1.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEV0_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 7.480e-15
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 LRCDKGTEYPSDESKTICLDSGINIEYTATHTPLQNGVSEHDGQTLAKIVRYLIKDGTFP 180
            LRCDKG E   +E +  C +S I +E+ AT+TP + GVSE DGQTLA + R L++DG FP
Sbjct:   13 LRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFP 72
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9701.1.1 vs.
Match: Integrase (catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAY3_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.390e-14
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 LRCDKGTEYPSDESKTICLDSGINIEYTATHTPLQNGVSEHDGQTLAKIVRYLIKDGTFP 180
            LRCDKG E   +E +  C +S I +E+ AT+TP + GVSE DGQTLA + R L++DG FP
Sbjct:  114 LRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFP 173
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9701.1.1 vs.
Match: Integrase (catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.630e-14
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 LRCDKGTEYPSDESKTICLDSGINIEYTATHTPLQNGVSEHDGQTLAKIVRYLIKDGTFPLSI 189
            +RCDKG E    E +  C +S I +EY AT+TP Q GVSE DGQTLA + R L+KDG FP S+
Sbjct:  171 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSEGDGQTLAGVTRCLLKDGDFPPSM 233
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9701.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.960e-14
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 LRCDKGTEYPSDESKTICLDSGINIEYTATHTPLQNGVSEHDGQTLAKIVRYLIKDGTFP 180
            +RC+ G E  ++E     +DS I IEY AT+TP QNGVSE DGQTL  I RYL+KDG FP
Sbjct:  434 IRCESGGENVANEFTKYFMDSDITIEYAATNTPQQNGVSERDGQTLTTITRYLMKDGAFP 493
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9701.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.690e-14
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 LRCDKGTEYPSDESKTICLDSGINIEYTATHTPLQNGVSEHDGQTLAKIVRYLIKDGTFPLSI 189
            +RCDKG E    E +  C +S I +EY AT+TP Q GVSE DGQTLA + R L+KDG FP S+
Sbjct:  512 IRCDKGGENAGSEFRNYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSM 574
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9701.1.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K611_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.500e-14
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 LRCDKGTEYPSDESKTICLDSGINIEYTATHTPLQNGVSEHDGQTLAKIVRYLIKDGTFPLSI 189
            +RCDKG E    E +  C +S I +EY AT+TP Q+GVSE DGQTL  + R L+KDG FP S+
Sbjct:  304 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQSGVSERDGQTLTGVTRCLLKDGDFPPSM 366
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9701.1.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H2_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.630e-14
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 LRCDKGTEYPSDESKTICLDSGINIEYTATHTPLQNGVSEHDGQTLAKIVRYLIKDGTFPLSI 189
            +RCDKG E    E +  C +S I +EY AT+TP Q GVSE DGQTLA + R L+KDG FP S+
Sbjct:   37 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSM 99
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9701.1.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.650e-14
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 LRCDKGTEYPSDESKTICLDSGINIEYTATHTPLQNGVSEHDGQTLAKIVRYLIKDGTFPLSI 189
            +RCDKG E    E +  C +S I +EY AT+TP Q GVSE DGQTLA + R L+KDG FP S+
Sbjct:  495 IRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSM 557
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9701.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Integrase9.780e-1761.67catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Integrase6.740e-1555.00catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Integrase7.480e-1553.33catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Integrase1.390e-1453.33catalytic domain-containing protein (Fragment) n=1... [more]
Integrase1.630e-1455.56catalytic domain-containing protein n=2 Tax=Ectoca... [more]
Uncharacterized1.960e-1458.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.690e-1455.56protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Integrase3.500e-1453.97catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Integrase3.630e-1455.56catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Integrase3.650e-1455.56catalytic domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9701contigH-canaliculatus_M_contigs9701:6..194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4096.XP_009783587.1
PFAMsRetrotran_gag_2,rve
Model size189
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.28e-09
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37YIU@33090|Viridiplantae,3GNSS@35493|Streptophyta,44TRJ@71274|asterids
DescriptionIntegrase core domain
Cds size189
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854223.1968203-CDS-H-canaliculatus_M_contigs9701:5..1941696854223.1968203-CDS-H-canaliculatus_M_contigs9701:5..194Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9701 6..194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9701.1.1prot_H-canaliculatus_M_contigs9701.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9701 6..194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9701.1.1

>prot_H-canaliculatus_M_contigs9701.1.1 ID=prot_H-canaliculatus_M_contigs9701.1.1|Name=mRNA_H-canaliculatus_M_contigs9701.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=63bp
LRCDKGTEYPSDESKTICLDSGINIEYTATHTPLQNGVSEHDGQTLAKIV
RYLIKDGTFPLSI
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mRNA from alignment at H-canaliculatus_M_contigs9701:6..194-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9701.1.1 ID=mRNA_H-canaliculatus_M_contigs9701.1.1|Name=mRNA_H-canaliculatus_M_contigs9701.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=189bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9701:6..194- (Hapterophycus canaliculatus Oshoro7m male)
CTGCGCTGCGACAAGGGCACGGAATATCCCTCGGACGAATCCAAGACGAT
CTGCCTCGACAGCGGCATCAACATCGAGTACACTGCCACGCACACGCCAC
TACAGAACGGAGTGTCCGAACACGACGGGCAGACACTGGCCAAGATCGTC
CGATACCTGATTAAGGACGGTACTTTCCCCCTTTCCATA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9701:6..194-

>mRNA_H-canaliculatus_M_contigs9701.1.1 ID=mRNA_H-canaliculatus_M_contigs9701.1.1|Name=mRNA_H-canaliculatus_M_contigs9701.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=189bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9701:6..194- (Hapterophycus canaliculatus Oshoro7m male)
CTGCGCTGCGACAAGGGCACGGAATATCCCTCGGACGAATCCAAGACGAT
CTGCCTCGACAGCGGCATCAACATCGAGTACACTGCCACGCACACGCCAC
TACAGAACGGAGTGTCCGAACACGACGGGCAGACACTGGCCAAGATCGTC
CGATACCTGATTAAGGACGGTACTTTCCCCCTTTCCATA
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