mRNA_H-canaliculatus_M_contigs9700.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9700.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9700.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9700.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN79_9PHAE)

HSP 1 Score: 271 bits (693), Expect = 2.680e-88
Identity = 128/156 (82.05%), Postives = 141/156 (90.38%), Query Frame = 1
Query:    1 RSKLTQNPDDARLQLEAAEALLKWMRHSTNGNFPTVSEEGRVSQGDSPSSRAIWRKYAPEALRLLKNGATHALDSDGSSGGFDIAKYRFLQAEASTYLSSAKGILRAALQADAVAFKRNVKPLIDDHPKYQGGVGHTFMGSFYLVAPWPVHNLGKA 468
            RS+L +NPDD RL L+ AEALLKW+RH+TNGNFP VS EG+V  GDSP+SRAIWRK+APEALRLLK GATHALDS    GG+D+AKYRFLQAEASTYLSSAKG+LRAALQADAVAF+RNVKPLIDDHP YQGGVGHTF+GSFYLVAPWPVHNL KA
Sbjct:   99 RSELKRNPDDPRLHLDTAEALLKWIRHTTNGNFPRVSAEGKVCDGDSPASRAIWRKHAPEALRLLKTGATHALDSGSCDGGYDLAKYRFLQAEASTYLSSAKGVLRAALQADAVAFRRNVKPLIDDHPAYQGGVGHTFLGSFYLVAPWPVHNLAKA 254          
BLAST of mRNA_H-canaliculatus_M_contigs9700.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAB6_9STRA)

HSP 1 Score: 128 bits (321), Expect = 4.580e-33
Identity = 70/151 (46.36%), Postives = 94/151 (62.25%), Query Frame = 1
Query:   16 QNPDDARLQLEAAEALLKWMRHSTNGNFPTVSEEGRVSQGDSPSSRAIWRKYAPEALRLLKNGATHALDSDGSSGGFDIAKYRFLQAEASTYLSSAKGILRAALQADAVAFKRNVKPLIDDHPKYQGGVGHTFMGSFYLVAPWPVHNLGKA 468
            Q   DA L+L  AEALL ++R  T+GN   +  +G+ S  DSP +R +WR +APEAL LL+       +     G   +  + FL AEA  Y S + G+++AAL+ DA  FK N KPL++ HP +  GVGHTFMG+FYL APWPVH+  KA
Sbjct:   95 QRRSDAALKLRTAEALLAYIRGKTDGN--ALRADGKHS--DSPENRRLWRTHAPEALSLLE-------EVKAEKGQEPL--HAFLYAEAFMYCSCSTGVVKAALKGDAFHFKSNAKPLLEQHPSFGNGVGHTFMGAFYLGAPWPVHSASKA 232          
BLAST of mRNA_H-canaliculatus_M_contigs9700.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BBW8_CHRCT)

HSP 1 Score: 89.0 bits (219), Expect = 4.210e-18
Identity = 52/140 (37.14%), Postives = 76/140 (54.29%), Query Frame = 1
Query:   37 LQLEAAEALLKWMRHSTNGNFPTVSEEGRVSQGDSPSSRAIWRKYAPEALRLLKNGATHALDSDGSSGGFDIAKYRFLQAEASTYLSSAKGILRAALQADAVAFKRNVKPLIDDHPKYQGGVGHTFMGSFYLVAPWPVHN 456
            L LEAA +L   MR  TN N   ++        D+P  + +WR+Y P AL L    A  A   D  +    +  Y    A+A  + +S +G+L+AA+    + FK N K LI   P + GG+GH ++G+FYL+APWP+HN
Sbjct:  136 LCLEAAISLNTLMRIRTNSNTLHITR-----MLDTPEHKKVWREYGPRALELATI-AKRARPRDPEA----LCAY----ADAFFFSTSTRGVLKAAVSGSGLQFKANAKELIAKCPTHDGGIGHCYLGAFYLMAPWPLHN 261          
BLAST of mRNA_H-canaliculatus_M_contigs9700.1.1 vs.
Match: 3-hydroxyisobutyryl-hydrolase (n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LQZ8_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 1.740e-16
Identity = 55/147 (37.41%), Postives = 79/147 (53.74%), Query Frame = 1
Query:   28 DARLQLEAAEALLKWMRHSTNGNFPTVSEEGRVSQGDSPSSRAIWRKYAPEALRLLKNGATHALDSDGSSGGFDIAKYRFLQAEASTYLSSAKGILRAALQADAVAFKRNVKPLIDDHPKYQGGVGHTFMGSFYLVAPWPVHNLGKA 468
            D RL L  A+AL   MR  TN N   ++   R+   D+P ++A+WR   P AL L    A  A   D  +    +  Y    A+A  + +S KG+L AA+    + FK N K LI   P+  GGVGH ++G+F+L+APWP+ N  +A
Sbjct:  311 DGRLSLACAKALNAIMRIRTNSNTLHIT---RLL--DTPENKAVWRSLGPRALELATR-AKKARPQDPEA----LVAY----ADAYFFANSVKGVLAAAVTGSGLEFKGNSKELIRRCPRADGGVGHCYLGAFFLMAPWPLCNPKRA 443          
BLAST of mRNA_H-canaliculatus_M_contigs9700.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q857_9EUKA)

HSP 1 Score: 81.3 bits (199), Expect = 1.960e-15
Identity = 49/147 (33.33%), Postives = 79/147 (53.74%), Query Frame = 1
Query:   31 ARLQLEAAEALLKWMRHSTNGNFPTVSEEGRVSQGDSPSSRAIWRKYAPEALRLLKNG-ATHALDSDGSSGGFDIAKYRFLQAEASTYLSSAKGILRAALQADAVAFKRNVKPLIDDHPKYQGGVGHTFMGSFYLVAPWPVHNLGKA 468
            A L+L+AA+AL   MR   +GN   V  +G +   D+P ++  W ++ P AL L +   A  +L  D  +   ++        +A  Y  ++KG+++ AL      F+R  + L+  H KY GGVGH F+G F+ VAPWP+ +  +A
Sbjct:   99 ALLKLKAADALNCAMRVFGDGNIFLV--DGTL---DTPQNKQFWGRHGPRALALARAARADPSLQRDALAAHTEM--------DAFMYSGASKGMIKQALTGVGTDFRRIAEGLVSQHEKYDGGVGHAFLGGFFFVAPWPLGDKKRA 232          
BLAST of mRNA_H-canaliculatus_M_contigs9700.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E6VSG3_9DELT)

HSP 1 Score: 77.4 bits (189), Expect = 4.430e-14
Identity = 53/156 (33.97%), Postives = 78/156 (50.00%), Query Frame = 1
Query:    1 RSKLTQNPDDARLQLEAAEALLKWMRHSTNGNFPTVSEEGRVSQGDSPSSRAIWRKYAPEALRLLKNGATHALDSDGSSGGFDIAKYRFLQAEASTYLSSAKGILRAALQADAVAFKRNVKPLIDDHPKYQGGVGHTFMGSFYLVAPWPVHNLGKA 468
            R  L   P++   +L   +AL   MR  T+GN P +  EG     D+   + IW +  PE L L +     A  +D  +    +A Y     +A  Y SSA GI+ A ++  A  +  N + +    PKY  G+GH FMG+FYL+APWP+ +  KA
Sbjct:   75 RDALAGAPNELDAKLNLVDALNCVMRIRTHGNIPLI--EGT---NDTEPHKKIWGQMGPETLALAEE-VYKARPNDIRA----LAAYT----DAYMYRSSAWGIVNAVVKGAADQYVENAEKMTKKFPKYDSGLGHAFMGAFYLLAPWPLSDEEKA 216          
BLAST of mRNA_H-canaliculatus_M_contigs9700.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AFS2_9EUKA)

HSP 1 Score: 67.8 bits (164), Expect = 2.010e-11
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 1
Query:  289 YLSSAKGILRAALQADAVAFKRNVKPLIDDHPKYQGGVGHTFMGSFYLVAPWPVHN 456
            + +S KG+L AA     + FK N K LI  +PK  GGVGH ++G+FYL+APWP+ N
Sbjct:   21 FANSVKGVLTAATTGSGLKFKANAKELIARYPKLDGGVGHCYLGAFYLMAPWPIKN 76          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9700.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
Uncharacterized2.680e-8882.05protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.580e-3346.36protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical4.210e-1837.14protein n=1 Tax=Chrysotila carterae TaxID=13221 Re... [more]
3-hydroxyisobutyryl-hydrolase1.740e-1637.41n=1 Tax=Chrysochromulina tobinii TaxID=1460289 Rep... [more]
Hypothetical1.960e-1533.33protein (Fragment) n=1 Tax=Coccolithus braarudii T... [more]
Uncharacterized4.430e-1433.97protein n=1 Tax=Myxococcales bacterium TaxID=20267... [more]
Hypothetical2.010e-1150.00protein n=1 Tax=Haptolina ericina TaxID=156174 Rep... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9700contigH-canaliculatus_M_contigs9700:2957..4139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2903.EOD10966
Model size468
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.28e-16
EggNOG OGs2D6NE@1|root,2T2FT@2759|Eukaryota
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854223.1425662-CDS-H-canaliculatus_M_contigs9700:2956..32141696854223.1425662-CDS-H-canaliculatus_M_contigs9700:2956..3214Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9700 2957..3214 +
1696854223.1547964-CDS-H-canaliculatus_M_contigs9700:3929..41391696854223.1547964-CDS-H-canaliculatus_M_contigs9700:3929..4139Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9700 3930..4139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9700.1.1prot_H-canaliculatus_M_contigs9700.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9700 2957..4139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9700.1.1

>prot_H-canaliculatus_M_contigs9700.1.1 ID=prot_H-canaliculatus_M_contigs9700.1.1|Name=mRNA_H-canaliculatus_M_contigs9700.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=156bp
RSKLTQNPDDARLQLEAAEALLKWMRHSTNGNFPTVSEEGRVSQGDSPSS
RAIWRKYAPEALRLLKNGATHALDSDGSSGGFDIAKYRFLQAEASTYLSS
AKGILRAALQADAVAFKRNVKPLIDDHPKYQGGVGHTFMGSFYLVAPWPV
HNLGKA
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mRNA from alignment at H-canaliculatus_M_contigs9700:2957..4139+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9700.1.1 ID=mRNA_H-canaliculatus_M_contigs9700.1.1|Name=mRNA_H-canaliculatus_M_contigs9700.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1183bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9700:2957..4139+ (Hapterophycus canaliculatus Oshoro7m male)
AGATCTAAGCTCACGCAGAATCCGGACGACGCGCGCTTGCAGCTTGAGGC GGCAGAGGCCCTCCTCAAGTGGATGAGGCACAGCACCAACGGAAATTTTC CCACGGTGTCGGAGGAAGGAAGAGTTTCCCAAGGCGATAGCCCATCCAGC AGGGCCATCTGGCGAAAATACGCCCCCGAAGCACTGCGCTTGCTAAAAAA CGGTGCCACGCACGCGCTTGATAGCGATGGCAGCAGCGGGGGCTTCGACA TAGCTAAGGTGAGGAGCGACAGACCCGCCTATTGGGGGAGCAATGAAGAA ACATGAAGCCCCCTCCTCATATCATGTGTAGATGTGGAGCGGTGTGGGGA CAGCGTGGCCTGTGCGCTGCTGGTGAAACTCAAAATTTTGTTGGTAAAAA ATCCCCCAAAGGCAGCAGGGAAACCTGGCGAAAACTCGCGCCGAAGGAAC TGAACTTGCTCAATACCGTCGCCACGACCGCGCGGTAGTGCTTGCAGCAG TGAGATCTACGACTTAGGTTGTGCGAGTCACTGACGAGATTGTAAGCAAA CCACGTCAAGGAAACTCCTTCGTTTGTCAACACTTGCACCAGCTTCAATT ATCATTTGAAGTTTCCGCCATCATTTTGGCAAGACCATCGTTCGTAAGAT TGCCCAGATGGTTGAAAGAGGGTCTTTCGACCCGTTCTCGGCTTGCACTT GGAAGCATCAGTTTCGTTGATGGGCGCGCGAGGTGTGGCAATATTCTGCT TTGTCCTGGGCGAAGCTGCCTTCGACCGCGTTCCGCCCGCCACGGAGAAG GTGTTCATCCCATTGGCCGGCTGTGTCGTCCGTTGTTCTGCAACACTTGA CTTTTCCACGCCCCTCGCCTCGTGCGCTCTGACAAATGTGAAACACAACG GTCGACCACCACAACCACACGTCTGCCGCCATCGCCGCCGACGCCACCTC CACCACGAACAAAAACAATGCAGTACCGGTTCCTCCAAGCCGAAGCATCC ACCTACCTCTCGAGCGCCAAGGGTATCCTGAGAGCTGCCCTGCAGGCGGA TGCCGTCGCCTTCAAGCGCAACGTCAAGCCGCTTATCGACGACCACCCGA AGTATCAAGGCGGCGTGGGGCATACATTCATGGGATCTTTCTACCTTGTG GCGCCCTGGCCCGTTCACAACCTCGGCAAGGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9700:2957..4139+

>mRNA_H-canaliculatus_M_contigs9700.1.1 ID=mRNA_H-canaliculatus_M_contigs9700.1.1|Name=mRNA_H-canaliculatus_M_contigs9700.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=468bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9700:2957..4139+ (Hapterophycus canaliculatus Oshoro7m male)
AGATCTAAGCTCACGCAGAATCCGGACGACGCGCGCTTGCAGCTTGAGGC
GGCAGAGGCCCTCCTCAAGTGGATGAGGCACAGCACCAACGGAAATTTTC
CCACGGTGTCGGAGGAAGGAAGAGTTTCCCAAGGCGATAGCCCATCCAGC
AGGGCCATCTGGCGAAAATACGCCCCCGAAGCACTGCGCTTGCTAAAAAA
CGGTGCCACGCACGCGCTTGATAGCGATGGCAGCAGCGGGGGCTTCGACA
TAGCTAAGTACCGGTTCCTCCAAGCCGAAGCATCCACCTACCTCTCGAGC
GCCAAGGGTATCCTGAGAGCTGCCCTGCAGGCGGATGCCGTCGCCTTCAA
GCGCAACGTCAAGCCGCTTATCGACGACCACCCGAAGTATCAAGGCGGCG
TGGGGCATACATTCATGGGATCTTTCTACCTTGTGGCGCCCTGGCCCGTT
CACAACCTCGGCAAGGCC
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