mRNA_H-canaliculatus_M_contigs968.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs968.1.1
Unique NamemRNA_H-canaliculatus_M_contigs968.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs968.1.1 vs.
Match: Integrase (catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 176 bits (446), Expect = 9.330e-47
Identity = 114/180 (63.33%), Postives = 129/180 (71.67%), Query Frame = 1 
Query:    1 MRYSKKGGTVKNENVHGGINRLVNGVARLGAEACDARLLQRVYRHNHDMDCKLDRTSKQSSLYL--EREANAAACSILISAPSPKAGSTPEVAAKDFEPMGFERAEERRAAAPEAARNTAANAVGRRQGNTRRSPPPTAAGK----GAGPPGAGVATVAGMAL------MPLPSATGGGR 504
            MR+SKKGGT KNEN HGGINRLVNGVARLGAEACDARLLQR++RHNHDMD KL RTSKQS+L++  ER+ANAAA SIL S P P+AG TP VAA+DFEP+GFE AE+RRA A   A+  AAN++     NTR S P T AG     GA   GAG    AG A+      MPLP    GGR
Sbjct: 1324 MRWSKKGGTGKNENFHGGINRLVNGVARLGAEACDARLLQRIHRHNHDMDRKLGRTSKQSTLWVWRERKANAAAESILTSRPFPRAGDTPTVAAEDFEPIGFEYAEQRRANALTHAKTAAANSLV----NTRTSLPSTTAGDTSRTGAAAVGAGAWAPAGTAVGACARVMPLPLTNRGGR 1499
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BLAST of mRNA_H-canaliculatus_M_contigs968.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Z6_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 4.770e-46
Identity = 113/180 (62.78%), Postives = 127/180 (70.56%), Query Frame = 1 
Query:    1 MRYSKKGGTVKNENVHGGINRLVNGVARLGAEACDARLLQRVYRHNHDMDCKLDRTSKQSSLYL--EREANAAACSILISAPSPKAGSTPEVAAKDFEPMGFERAEERRAAAPEAARNTAANAVGRRQGNTRRSPPPTAAGK----GAGPPG------AGVATVAGMALMPLPSATGGGR 504
            MR+SKKGGT KNEN HGGINRLVNGVARLGAEACDARLLQR++RHNHDMD KL RTSKQS+L++  ER+ANAAA SIL S P P+AG TP VAA+DFEPMGFE AE+RRA A   A+  AAN++      TR S P T AG     GA   G      AG A  A   +MPLP    GGR
Sbjct:  108 MRWSKKGGTGKNENFHGGINRLVNGVARLGAEACDARLLQRIHRHNHDMDRKLGRTSKQSTLWVWRERKANAAAESILTSRPFPRAGDTPTVAAEDFEPMGFEYAEQRRANALTNAKTAAANSLVL----TRTSLPSTTAGDTSRAGAAAVGXXXXXXAGTAVGACARVMPLPLTNRGGR 283
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BLAST of mRNA_H-canaliculatus_M_contigs968.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAH5_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 9.990e-41
Identity = 80/101 (79.21%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:    1 MRYSKKGGTVKNENVHGGINRLVNGVARLGAEACDARLLQRVYRHNHDMDCKLDRTSKQSSLYL--EREANAAACSILISAPSPKAGSTPEVAAKDFEPMG 297
            MR+SKKGGT KNEN HGGINRLVNGVARLGAEACDARLLQR++RHNHDMD KL RTSKQS+L++  ER+ANAAA SIL S P P+AG TP VAA+DFEPMG
Sbjct:   18 MRWSKKGGTGKNENFHGGINRLVNGVARLGAEACDARLLQRIHRHNHDMDRKLGRTSKQSTLWVWRERKANAAAESILTSRPFPRAGDTPTVAAEDFEPMG 118
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BLAST of mRNA_H-canaliculatus_M_contigs968.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB2_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.540e-34
Identity = 107/266 (40.23%), Postives = 121/266 (45.49%), Query Frame = 1 
Query:    1 MRYSKKGGTVKNENVHGGINRLVNGVARLGAEACDARLLQRVYRHNHDMDCKLDRTSKQSSLYLERE--ANAAACSILISAPSPKAGSTPEVAAKDFEPMGFERAEERRAAAPEAARNTAANAVGRRQGNTRRSPPPTAAGKGAGPPGAGVATVAGMALMPLPSA---TGGGRT-----------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASAPHMSLPNAGGTTGQGTSFANYGGSRRLPSRQ 732
            MR+SKKGGT KNEN HGGINRLV GVAR+G EACDARLLQRVYRHN D+D KL  TS+QS+ +  RE   N A   +L S P P A    ++  KD EP GFE    R+AA    A N AA  V  R+GN  RS P T AG  A                        T GGR                  +                                       GAS       NAGG+ GQ TSFANYGG R+L  RQ
Sbjct:    1 MRWSKKGGTGKNENFHGGINRLVAGVARIGVEACDARLLQRVYRHNLDVDRKLGNTSEQSTRWPWREHVVNEAVRGVLGSLPFPTAPPDSKIPTKDLEPTGFEYRTARKAAGRREAMNAAARIVAERRGNNPRSSPSTTAGSAAXXXXXXXXXXXXXXXXXXXXXXXXTAGGRMGTXXXXXXXXXXXXAPLSAMTATGAAEAATRFVPPLWLRLPSTATRGAAVGGGMMGVGASTSTADRRNAGGSFGQDTSFANYGGGRKLHGRQ 266
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BLAST of mRNA_H-canaliculatus_M_contigs968.1.1 vs.
Match: Uncharacterized (protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMP1_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.930e-32
Identity = 94/186 (50.54%), Postives = 102/186 (54.84%), Query Frame = 1 
Query:    1 MRYSKKGGTVKNENVHGGINRLVNGVARLGAEACDARLLQRVYRHNHDMDCKLDRTSKQSSLY--LEREANAAACSILISAPSPKAGSTP----------------EVAAKDFEPMGFERAEERRAAAPEAARNTAANAVGRRQGNTRRSPPPTAAGKGAGPPGAGVATVAGMALMPLPSATGGGR 504
            MR+SKKGGT KNEN HGGINRLV GVAR+G EACDARLLQRV RHN DMD KL  TSKQS+ +   ER  N AA  IL S P PKA   P                ++  KD EPMGFE    R+AA    A N A   V  R+GN  RS P   AG          A   G    PLP  T GGR
Sbjct:   66 MRWSKKGGTGKNENFHGGINRLVAGVARIGVEACDARLLQRVCRHNLDMDRKLGNTSKQSTRWPWRERVVNKAASGILASLPFPKAPPDPKHDVCDANSLLFVCRCQIPTKDLEPMGFEFHTARKAAGRREAMNAATRIVAERRGNNPRSSPSMTAGS---------AAREGPETAPLPLPTAGGR 242
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs968.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Integrase9.330e-4763.33catalytic domain-containing protein n=1 Tax=Ectoca... [more]
Uncharacterized4.770e-4662.78protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.990e-4179.21protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.540e-3440.23protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.930e-3250.54protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs968contigH-canaliculatus_M_contigs968:19..1076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size732
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_003950.1
Cds size732
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854221.6045952-CDS-H-canaliculatus_M_contigs968:18..941696854221.6045952-CDS-H-canaliculatus_M_contigs968:18..94Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs968 19..94 -
1696854221.6211314-CDS-H-canaliculatus_M_contigs968:247..6361696854221.6211314-CDS-H-canaliculatus_M_contigs968:247..636Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs968 248..636 -
1696854221.631976-CDS-H-canaliculatus_M_contigs968:797..8731696854221.631976-CDS-H-canaliculatus_M_contigs968:797..873Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs968 798..873 -
1696854221.6420047-CDS-H-canaliculatus_M_contigs968:885..10761696854221.6420047-CDS-H-canaliculatus_M_contigs968:885..1076Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs968 886..1076 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs968.1.1prot_H-canaliculatus_M_contigs968.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs968 19..1076 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs968.1.1

>prot_H-canaliculatus_M_contigs968.1.1 ID=prot_H-canaliculatus_M_contigs968.1.1|Name=mRNA_H-canaliculatus_M_contigs968.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=244bp
MRYSKKGGTVKNENVHGGINRLVNGVARLGAEACDARLLQRVYRHNHDMD
CKLDRTSKQSSLYLEREANAAACSILISAPSPKAGSTPEVAAKDFEPMGF
ERAEERRAAAPEAARNTAANAVGRRQGNTRRSPPPTAAGKGAGPPGAGVA
TVAGMALMPLPSATGGGRTAAAPAAGVPPPSTIARGRAGAAGAAHMSLPS
STTGGRAGAGASAPHMSLPNAGGTTGQGTSFANYGGSRRLPSRQ
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mRNA from alignment at H-canaliculatus_M_contigs968:19..1076-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs968.1.1 ID=mRNA_H-canaliculatus_M_contigs968.1.1|Name=mRNA_H-canaliculatus_M_contigs968.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1058bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs968:19..1076- (Hapterophycus canaliculatus Oshoro7m male)
ATGAGGTATTCCAAGAAAGGAGGAACGGTGAAAAACGAAAATGTCCACGG
CGGTATCAACCGTCTGGTGAATGGCGTGGCTCGTCTCGGTGCGGAAGCGT
GCGATGCGAGGCTTCTGCAACGCGTATATCGTCACAACCACGACATGGAC
TGCAAGCTTGATCGCACCAGCAAGCAATCTTCTCTCTACTTGTAGGTGTG
GAGGGAGCGCGAGGCGAACGCAGCGGCATGTTCGATCCTCATCTCGGCCC
CGTCCCCCAAGGCGGGGTCCACCCCGGAGGTAGATCCCAGCTGTATGCGG
ATGAAAGTACACTTTCAACCTAAACGGGTTACACATTTCAGCTTTACCTT
TTGTTTCGTGTGTTCAGGTCGCCGCTGTGAATTCCCCATGTACTCTCCAA
TACGTCTACCATGCCCACCCCATTGTATAACTCGTTGCAGGTGGCCGCCA
AGGATTTCGAGCCGATGGGGTTCGAGCGCGCGGAAGAGAGGAGAGCTGCC
GCTCCGGAAGCGGCCAGAAACACTGCAGCGAACGCCGTAGGCAGGCGGCA
GGGCAACACCCGTCGTTCTCCACCGCCGACGGCAGCGGGAAAGGGTGCCG
GCCCGCCGGGAGCAGGGGTGGCGACCGTAGCGGGGATGGCGCTCATGCCG
TTGCCGTCAGCGACAGGAGGAGGCCGGACGGCGGCGGCGCCGGCGGCGGG
GGTGCCGCCGCCGTCTACGATAGCAAGGGGCAGGGCGGGGGCAGCGGGGG
CGGCGCACATGTCGTTGCCGTCGTCGACGACGGGGGGCCGGGCCGGAGCG
GGAGCATCGGCACCGCACATGTCGTTGCCGTCAATAACATAAAAAGGTGC
TGCCGAGGGGGCGGGGGCCATGCCGCCATTGTTGTTGCCTTCGTCAGCGA
CTACAGCAGGCGCTGTCGAGGGGTGTGCGAGTGCTGGGGGCGGCGGGTTG
GTCGAACGTGCGGCCAGCAGGGCCTACGGCAGCAACGCCGGAGGAACCAC
CGGCCAAGGCACCTCTTTTGCCAACTACGGGGGATCGCGGCGTTTGCCTT
CAAGGCAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs968:19..1076-

>mRNA_H-canaliculatus_M_contigs968.1.1 ID=mRNA_H-canaliculatus_M_contigs968.1.1|Name=mRNA_H-canaliculatus_M_contigs968.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=732bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs968:19..1076- (Hapterophycus canaliculatus Oshoro7m male)
ATGAGGTATTCCAAGAAAGGAGGAACGGTGAAAAACGAAAATGTCCACGG
CGGTATCAACCGTCTGGTGAATGGCGTGGCTCGTCTCGGTGCGGAAGCGT
GCGATGCGAGGCTTCTGCAACGCGTATATCGTCACAACCACGACATGGAC
TGCAAGCTTGATCGCACCAGCAAGCAATCTTCTCTCTACTTGGAGCGCGA
GGCGAACGCAGCGGCATGTTCGATCCTCATCTCGGCCCCGTCCCCCAAGG
CGGGGTCCACCCCGGAGGTGGCCGCCAAGGATTTCGAGCCGATGGGGTTC
GAGCGCGCGGAAGAGAGGAGAGCTGCCGCTCCGGAAGCGGCCAGAAACAC
TGCAGCGAACGCCGTAGGCAGGCGGCAGGGCAACACCCGTCGTTCTCCAC
CGCCGACGGCAGCGGGAAAGGGTGCCGGCCCGCCGGGAGCAGGGGTGGCG
ACCGTAGCGGGGATGGCGCTCATGCCGTTGCCGTCAGCGACAGGAGGAGG
CCGGACGGCGGCGGCGCCGGCGGCGGGGGTGCCGCCGCCGTCTACGATAG
CAAGGGGCAGGGCGGGGGCAGCGGGGGCGGCGCACATGTCGTTGCCGTCG
TCGACGACGGGGGGCCGGGCCGGAGCGGGAGCATCGGCACCGCACATGTC
GTTGCCCAACGCCGGAGGAACCACCGGCCAAGGCACCTCTTTTGCCAACT
ACGGGGGATCGCGGCGTTTGCCTTCAAGGCAG
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