mRNA_H-canaliculatus_M_contigs9554.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9554.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9554.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9554.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNR5_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 7.600e-87
Identity = 133/159 (83.65%), Postives = 147/159 (92.45%), Query Frame = 1 
Query:    1 MADEEKKPRHRLGADELLEETQGAIGKIVHVLESNGLAAESVEHLRSLAKGVDFMGALNLARRLGLSMPDVPHDELMALLLDAWDWMVYKTGHTRKQMYRKVRLLEADNKTEPDTLDRWKGERDKAERESAKANVAYVTIREIVRSFKDVPSKEEGEEA 477
            MADE++KPRHRLGADELLEETQGA  KIV++LE NGLAAES+EHL SL KG DFMG+LNLARRLGLSMPDVPH++L+ LLLDAWD +VYKTGHTRKQMYRKVRLLEADNKTEPDTLDRWKGERDKAERESAKANVAYVT+REI +SFK+ P +EEGE A
Sbjct:    1 MADEDRKPRHRLGADELLEETQGASAKIVNLLEVNGLAAESIEHLTSLTKGGDFMGSLNLARRLGLSMPDVPHNDLVVLLLDAWDCVVYKTGHTRKQMYRKVRLLEADNKTEPDTLDRWKGERDKAERESAKANVAYVTMREIAKSFKEEP-QEEGEGA 158
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BLAST of mRNA_H-canaliculatus_M_contigs9554.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPP5_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.940e-36
Identity = 73/166 (43.98%), Postives = 108/166 (65.06%), Query Frame = 1 
Query:    1 MADE---EKKPRHRLGADELLEETQGAIGKIVHVLESNGLAAESVEHLRSLAKGVDFMGALNLARRLGLSMPDVPHDELMALLLDAWDWMVYKTGHTRKQMYRKVRLLEADNKTEPDTLDRWKGERDKAERESAKANVAYVTIREIVRSFKDVPSKEEGEEAGETS 489
            M+DE   EKKPR R+ A+ELLEET  A+ K V  LESNGL A SVE++R L   + +  AL+L + LG +MP + HD  + +LLD W+ +     ++R+  YRKVR+LEAD KT+P+ L +W  +R + ++ESA  N++Y+ +R+I+R+         GE AG T+
Sbjct:    1 MSDEPAGEKKPRTRMNAEELLEETSQAMEKAVAFLESNGLHAASVENVRHLTSALAWSDALHLTQSLGFTMPHIDHDAFIVMLLDTWECVAQMKLNSRRACYRKVRVLEADQKTDPEVLAKWLADRARVDKESAATNLSYIKMRQILRA---------GEPAGNTA 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9554.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized7.600e-8783.65protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.940e-3643.98protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9554contigH-canaliculatus_M_contigs9554:239..1151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size498
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_006120.1
Cds size498
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854215.2109408-CDS-H-canaliculatus_M_contigs9554:238..4331696854215.2109408-CDS-H-canaliculatus_M_contigs9554:238..433Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9554 239..433 -
1696854215.225643-CDS-H-canaliculatus_M_contigs9554:699..8371696854215.225643-CDS-H-canaliculatus_M_contigs9554:699..837Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9554 700..837 -
1696854215.239763-CDS-H-canaliculatus_M_contigs9554:986..11511696854215.239763-CDS-H-canaliculatus_M_contigs9554:986..1151Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9554 987..1151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9554.1.1prot_H-canaliculatus_M_contigs9554.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9554 239..1151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9554.1.1

>prot_H-canaliculatus_M_contigs9554.1.1 ID=prot_H-canaliculatus_M_contigs9554.1.1|Name=mRNA_H-canaliculatus_M_contigs9554.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=166bp
MADEEKKPRHRLGADELLEETQGAIGKIVHVLESNGLAAESVEHLRSLAK
GVDFMGALNLARRLGLSMPDVPHDELMALLLDAWDWMVYKTGHTRKQMYR
KVRLLEADNKTEPDTLDRWKGERDKAERESAKANVAYVTIREIVRSFKDV
PSKEEGEEAGETSET*
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mRNA from alignment at H-canaliculatus_M_contigs9554:239..1151-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9554.1.1 ID=mRNA_H-canaliculatus_M_contigs9554.1.1|Name=mRNA_H-canaliculatus_M_contigs9554.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=913bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9554:239..1151- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCGGACGAAGAGAAAAAGCCTCGGCATCGGCTTGGCGCGGATGAACT
CCTCGAAGAAACACAGGGAGCTATCGGGAAGATTGTCCACGTTCTGGAGT
CCAACGGACTTGCCGCAGAATCCGTGGAGCATCTCAGAAGCTTGGCCAAA
GGGGTTGACTTCATGGTGAGTAGTCTTCGCCGACATCGGCAAGGGTTACC
CCGAGATTGAGAAGTGCGCGCCGAGAATATGGTACAATGCCGAGGCCGGT
GCTTGACAGAATCAATCTCAATCTTGCCCTTACAGCTGGTTCTGAACACA
CCGCTATTGCCCAGGGGGCGCTGAACTTGGCGAGACGATTAGGCTTGAGC
ATGCCAGACGTGCCGCACGATGAGCTCATGGCATTGCTATTGGACGCATG
GGATTGGATGGTGTACAAGACAGGTCACACCCGAAAACAAATGTATAGAA
AGGTGCGAATCGCGCCGCCGGGATTGGGCTGTCCTCATGAAGTAGGAAGG
CGATCTCGGCAAAATCCAAGGACTCTTTGTAAGTACACTAGGGCTTGAGC
TACACGATTACCGTTCGGTTGCGGTACTGACCATGAGTGCGCCTAGTCAT
GCTTGAAACCGAGGTCTCTTTGAAACGGATCACTTTGGTTGCACAACTGT
TGATAGTACGGTCTACAAAGAGTGTCTCAAGCGAAATACACACGGCATGA
TGTGGCTGTGATACATAGGTGAGGTTACTCGAGGCAGACAACAAAACTGA
GCCGGACACGTTGGACCGATGGAAAGGGGAGCGAGATAAGGCGGAGAGAG
AAAGCGCCAAGGCTAATGTAGCTTACGTCACCATCCGTGAGATCGTCAGG
TCGTTCAAGGATGTACCATCCAAGGAGGAAGGGGAAGAAGCAGGAGAAAC
CTCGGAAACATAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9554:239..1151-

>mRNA_H-canaliculatus_M_contigs9554.1.1 ID=mRNA_H-canaliculatus_M_contigs9554.1.1|Name=mRNA_H-canaliculatus_M_contigs9554.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=498bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9554:239..1151- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCGGACGAAGAGAAAAAGCCTCGGCATCGGCTTGGCGCGGATGAACT
CCTCGAAGAAACACAGGGAGCTATCGGGAAGATTGTCCACGTTCTGGAGT
CCAACGGACTTGCCGCAGAATCCGTGGAGCATCTCAGAAGCTTGGCCAAA
GGGGTTGACTTCATGGGGGCGCTGAACTTGGCGAGACGATTAGGCTTGAG
CATGCCAGACGTGCCGCACGATGAGCTCATGGCATTGCTATTGGACGCAT
GGGATTGGATGGTGTACAAGACAGGTCACACCCGAAAACAAATGTATAGA
AAGGTGAGGTTACTCGAGGCAGACAACAAAACTGAGCCGGACACGTTGGA
CCGATGGAAAGGGGAGCGAGATAAGGCGGAGAGAGAAAGCGCCAAGGCTA
ATGTAGCTTACGTCACCATCCGTGAGATCGTCAGGTCGTTCAAGGATGTA
CCATCCAAGGAGGAAGGGGAAGAAGCAGGAGAAACCTCGGAAACATAA
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