mRNA_H-canaliculatus_M_contigs9528.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9528.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9528.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSE6_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 1.440e-58
Identity = 89/116 (76.72%), Postives = 99/116 (85.34%), Query Frame = 1
Query:    1 MSSPGTGGADGPPGFFLVIANISKRCNIRSLIASAVAFGAEVLVVGQPKFSIDTHAPKGLLPAGFTVSRFADLPSCRDYVHSRGGTLVGVEIGDGARNVDEEPFSGPCAFMPGNEA 348
            M+ P    +  PP  FLVIANISKRCNIRSLIASAVAF AE+L+VGQPKFSI+THAP+GL P G T +RF+DLPSCRDYVHSRGGTL+GVEIG GARN+DEEPF G CAFMPGNEA
Sbjct:    1 MNKPVNAASSVPPVLFLVIANISKRCNIRSLIASAVAFQAEILIVGQPKFSIETHAPRGL-PPGITFTRFSDLPSCRDYVHSRGGTLIGVEIGGGARNIDEEPFLGTCAFMPGNEA 115          
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Match: SpoU_methylase (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWR0_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.170e-35
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 1
Query:  133 VGQPKFSIDTHAPKGLLPAGFTVSRFADLPSCRDYVHSRGGTLVGVEIGDGARNVDEEPFSGPCAFMPGNE 345
            VGQPKFSI+THAP+GL P G T +RF+DLPSCRDYVHSRGGTL+GVEIG GARN+DEEPF G CAFMPGNE
Sbjct:   40 VGQPKFSIETHAPRGL-PPGITFTRFSDLPSCRDYVHSRGGTLIGVEIGGGARNIDEEPFLGTCAFMPGNE 109          
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H1E1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 8.510e-21
Identity = 44/96 (45.83%), Postives = 67/96 (69.79%), Query Frame = 1
Query:   46 FLVIANISKRCNIRSLIASAVAFGAEV-LVVGQPKFSIDTHAPKGLLP------AGFTVSRFADLPSCRDYVHSRGGTLVGVEIGDGARNVDEEPF 312
            +LVI N++K+ NIR+LI+SA AFG +V L+VGQPKF ++THAP G++        GF++ R A+L  C  ++++R  TL G+EI DGA +++   F
Sbjct:    4 YLVITNVAKKQNIRNLISSAFAFGIDVVLIVGQPKFELETHAPPGIVELMASGSVGFSIVRLANLGDCVHFLNARKATLYGIEIVDGASSIENINF 99          
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Match: SpoU_methylase (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YH37_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 4.510e-18
Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 1
Query:   46 FLVIANISKRCNIRSLIASAVAFGA-EVLVVGQPKFSIDTHAPKGLLPAGFTVSRFADLPSCRDYVHSRGGTLVGVEIGDGARNVDEEPFSGPCAFMPGNE 345
            FL++ N+ K  NI+S++ SA AFGA EV VVGQ KF    H    L      V+R + L  CR     RG  +VGVEI DGAR++ + PF+G  AF+ GNE
Sbjct:   20 FLIVNNVQKIKNIKSMLVSASAFGASEVFVVGQRKFEFAAHESFLLQALRVPVTRVSSLADCRALCIERGIRIVGVEIIDGARSILDAPFTGDTAFIMGNE 120          
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Match: Alpha/beta (knot methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT9_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.800e-16
Identity = 46/110 (41.82%), Postives = 63/110 (57.27%), Query Frame = 1
Query:   37 PGFFLVIANISKRCNIRSLIASAVAFGAEVLVVGQPKFSIDTHAPKGLLPAGFTVSRFADLPSCRDYVHSRGGTLVGVEIGDGARNVDEEPFSGP-------CAFMPGNE 345
            P  +L+I +ISK+ N+R L+  A AFGA V+VVGQP +           P    V+RF  L    +++ +RG  +VGVEI D AR+V+EEPF G         AF+ GNE
Sbjct:   35 PCCYLIINHISKKHNVRKLLGGAAAFGARVVVVGQPTYDF---------PERHAVTRFHALSDACNWLRARGIAVVGVEIADDARSVEEEPFDGAGCGRGGGIAFLMGNE 135          
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Match: Obp33pep (like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UCB5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 8.090e-15
Identity = 51/127 (40.16%), Postives = 68/127 (53.54%), Query Frame = 1
Query:   37 PGFFLVIANISKRCNIRSLIASAVAFGAEVLVVGQPKFSIDTHAPKGLLPA---GFTVS---------RF-ADLPSCRDYVHSRGGTLVGVEIGDGARNVDEEPFS-----------GPCAFMPGNE 345
            P   L++ +ISKR N+R+L+ SA AFGAEVLVVGQP F+  +H P+ L  A   G   S         RF   L  CRD +  +   + GVEIG+ A NV+E P++           G  A + GNE
Sbjct:   34 PRLLLLLHHISKRQNVRTLLTSAAAFGAEVLVVGQPSFNETSHVPRRLAEALTQGENASICQPQPLYRRFHGTLEECRDQLREQNVQIWGVEIGEAAVNVEEIPWATSASKWEKEGRGGIALLLGNE 160          
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Match: Probable (tRNA (Guanosine(18)-2'-O)-methyltransferase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SQG2_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 3.020e-14
Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   16 TGGADGPPGFFLVIANISKRCNIRSLIASAVAFGA-EVLVVGQPKFSIDTHAPKGLLPAGFTVSR-FADLPSCRDYV-HSRGGTLVGVEIGDGARNVDEEPFSGPCAFMPGNE 345
            +G A  PPG +L++ N+SKR NI +L+ SA AFG  EV +VG  +F+  T    G   A +   R F  L  C  Y+   RG  ++GVEI + A+ +   PFSGP AFM GNE
Sbjct:   26 SGAAVSPPGCYLIVHNVSKRHNIGTLVRSAAAFGVTEVCLVGARQFN--TFGSHG--SADYVKYRHFPSLQECCRYLKEDRGCRVMGVEITEDAQPIHAHPFSGPTAFMLGNE 134          
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HIS8_POLGL)

HSP 1 Score: 70.9 bits (172), Expect = 1.780e-12
Identity = 40/104 (38.46%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   37 PGFFLVIANISKRCNIRSLIASAVAFG-AEVLVVGQPKFSIDTHAPKGLLPAGFTVSRFADLPSCRDYVHSRGGTLVGVEIGDGARNVDEEPFSGPCAFMPGNE 345
            P  +L++ N+ K+ N  +L+ SA AFG +EV++VG  K +  T   +G      T   F  L + ++++  RG  + G+EI D A+ V   PFSGP AFM GNE
Sbjct:   26 PESYLLLFNVGKKQNFGTLLRSACAFGVSEVVIVGAKKLA--TFGNQGTAQHAQT-RHFDSLEAAKEFLTGRGARICGIEIDDNAKPVSTHPFSGPTAFMLGNE 126          
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Match: SpoU_methylase (domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YY40_COCSC)

HSP 1 Score: 70.9 bits (172), Expect = 2.060e-12
Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = 1
Query:   25 ADGPPGFFLVIANISKRCNIRSLIASAVAFGA-EVLVVGQPKFS-IDTHAPKGLLPAGFTVSRFADLPSCRDYV-HSRGGTLVGVEIGDGARNVDEEPFSGPCAFMPGNE 345
            A+  PG +L++ N+SKR NI +L+ SA AF   EV +VG  +F+   +H     +        F  L  C  Y+   +G  ++GVEI + A+ +   PFSGP AFM GNE
Sbjct:   24 AESSPGCYLIVHNVSKRHNIGTLVRSAAAFSVTEVCLVGARQFNTFGSHGSADYV----NYRHFPSLQECCHYLKQDKGCRIMGVEIAEDAQPIHAHPFSGPTAFMLGNE 129          
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PU43_9DINO)

HSP 1 Score: 68.2 bits (165), Expect = 1.790e-11
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 1
Query:   37 PGFFLVIANISKRCNIRSLIASAVAFG-AEVLVVGQPKFSIDTHAPKGLLPAGFTVSRFADLPSCRDYVHSRGGTLVGVEIGDGARNVDEEPFSGPCAFMPGNE 345
            P  FL++ N+ KR N  +L+ SA AFG ++V VVG  K +  T   +G   A      F  L + R  + +RG  + G+EI D A  V+  PF+GP AFM GNE
Sbjct:   15 PASFLILHNVGKRQNFGALLRSACAFGVSDVYVVGAKKLA--TFGNQGTASAA-PQRHFETLDAARADLAARGARVCGIEIDDTAVPVNRHPFTGPTAFMLGNE 115          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
Uncharacterized1.440e-5876.72protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
SpoU_methylase2.170e-3581.69domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Hypothetical8.510e-2145.83protein (Fragment) n=1 Tax=Dictyocha speculum TaxI... [more]
SpoU_methylase4.510e-1846.53domain-containing protein n=1 Tax=Pythium brassicu... [more]
Alpha/beta1.800e-1641.82knot methyltransferase n=1 Tax=Tribonema minus Tax... [more]
Obp33pep8.090e-1540.16like protein n=1 Tax=Nannochloropsis gaditana TaxI... [more]
Probable3.020e-1443.36tRNA (Guanosine(18)-2'-O)-methyltransferase n=1 Ta... [more]
Hypothetical1.780e-1238.46protein n=1 Tax=Polarella glacialis TaxID=89957 Re... [more]
SpoU_methylase2.060e-1238.18domain-containing protein n=1 Tax=Coccomyxa subell... [more]
Hypothetical1.790e-1140.38protein (Fragment) n=1 Tax=Brandtodinium nutricula... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9528contigH-canaliculatus_M_contigs9528:361..1828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSE6
PFAMsSpoU_methylase
Model size348
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.36e-59
EggNOG OGsCOG0566@1|root,KOG0838@2759|Eukaryota
Ec32 ortholog descriptiontRNA (guanine-N1-)-methyltransferase, N-terminal
Ec32 orthologEc-25_000890.1
DescriptionrRNA methyltransferase
Cds size348
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854213.7821286-CDS-H-canaliculatus_M_contigs9528:360..5751696854213.7821286-CDS-H-canaliculatus_M_contigs9528:360..575Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9528 361..575 -
1696854213.7934544-CDS-H-canaliculatus_M_contigs9528:1695..18281696854213.7934544-CDS-H-canaliculatus_M_contigs9528:1695..1828Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9528 1696..1828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9528.1.1prot_H-canaliculatus_M_contigs9528.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9528 361..1828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9528.1.1

>prot_H-canaliculatus_M_contigs9528.1.1 ID=prot_H-canaliculatus_M_contigs9528.1.1|Name=mRNA_H-canaliculatus_M_contigs9528.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=116bp
MSSPGTGGADGPPGFFLVIANISKRCNIRSLIASAVAFGAEVLVVGQPKF
SIDTHAPKGLLPAGFTVSRFADLPSCRDYVHSRGGTLVGVEIGDGARNVD
EEPFSGPCAFMPGNEA
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mRNA from alignment at H-canaliculatus_M_contigs9528:361..1828-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9528.1.1 ID=mRNA_H-canaliculatus_M_contigs9528.1.1|Name=mRNA_H-canaliculatus_M_contigs9528.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1468bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9528:361..1828- (Hapterophycus canaliculatus Oshoro7m male)
ATGAGTTCGCCAGGCACAGGTGGTGCTGACGGTCCTCCCGGCTTCTTCCT GGTGATAGCCAACATCTCCAAGCGCTGCAACATCCGTTCTCTTATCGCGT CGGCAGTGGCCTTCGGGGCAGAAGTGCTTGTCGGTGTGTCTATATATTTC GTCAATATTCCGTTGGTCTTCCGTCTGTTTTCTGGCGTTGGGCAGGAGTC GATTTCAACGCAGTAAAGCCCCTTATCTCCACGACAGGACTTGCGTGGAT GTATTGGATGCCTGTCAGCAGTGAGGATTCCATGAGGCCGATGGAGGCAA CGAACACATCGGTGGACGTGATACCTGTTTAGTCTGTTGCCTCTGCCTGC GACGAACGTATCAAAGTTTTCATATCCAGACTTGAGGTTATCGACTGTCT CGATGACACCAACTCGATGTCATCGTTCCCTTGATGGGAAAGCGATCAAC GTCGAAAAAGGAGAGGATGGAGATGTTAAGAGAGAGCTCCTCGCAGTAGG CAGGGTTCGATGGGGCCGAGCGGGAGGATAGCACCATCGCTCCATTTTTA GAGGTCGGAAAATAAGAATGCAACCAAGATGCAACCCCCAACCTTCTCAA AAGTGTCAGAATGCTGCAGCTTCTTCTGCAGCCTACAGCAGTCCAGGTCA ACGAGGCCACGTGTTGGACACGTGTAACGTGTGGTCTCGCGCTCTCGGCT TGCCCGTTGTCTTCTAGGCTGTCCAACAGGGGCCATCTCGATAGCTCATT CCACGCCATTTGTCATCTTCAAGCAGACATTGGAACGAAAACAAGGGGAC AGCCACAGTAGTTGGAGAGTTCCTGTAACACGGTTTCGTTGCCTGTACCC CGGCCGAAAGTTGTCCTCTTGTTGCTTGCAACCTGTGGTCGCAGGTTGCC GCTGGTCCATTGTGGGGCGGCGAGGGTGCTGGCGGTCTGTTCTACATCCA AGCGCCGTCGTGCGTTACAGACCGCTGTGCGTGTTGCCCGCCCTATCCTA CGCGCCGTAGTGTAATCGTGATGGTATCGGTTACAAACACACACGGCGTA ATTTCGTCACACAGCACAGAGAGCGTCGGTTCTCAACCCGCACCCCTCTC GCACGTGTCTTCCCCGTGTCCCCTTCGCCATTTTTCCCAAGTACCGGTAC CTGAACCCTGCCCCTCCCTCCCCTCACGTGTCACGACACTTGTACGTTTT TCGAATTCCTACGATCCACTTGAACGCGAAATATGGTCCGCTCGTTCTTC CAGTCGGGCAGCCCAAGTTTTCCATCGACACCCACGCGCCCAAGGGGTTG CTGCCTGCGGGGTTCACAGTCTCTAGATTCGCCGACCTCCCGTCATGTCG GGACTACGTGCACTCGAGAGGGGGCACGCTGGTGGGAGTGGAGATCGGGG ATGGCGCAAGGAACGTAGACGAGGAGCCGTTCTCCGGACCGTGCGCCTTT ATGCCGGGAAACGAGGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9528:361..1828-

>mRNA_H-canaliculatus_M_contigs9528.1.1 ID=mRNA_H-canaliculatus_M_contigs9528.1.1|Name=mRNA_H-canaliculatus_M_contigs9528.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9528:361..1828- (Hapterophycus canaliculatus Oshoro7m male)
ATGAGTTCGCCAGGCACAGGTGGTGCTGACGGTCCTCCCGGCTTCTTCCT
GGTGATAGCCAACATCTCCAAGCGCTGCAACATCCGTTCTCTTATCGCGT
CGGCAGTGGCCTTCGGGGCAGAAGTGCTTGTCGTCGGGCAGCCCAAGTTT
TCCATCGACACCCACGCGCCCAAGGGGTTGCTGCCTGCGGGGTTCACAGT
CTCTAGATTCGCCGACCTCCCGTCATGTCGGGACTACGTGCACTCGAGAG
GGGGCACGCTGGTGGGAGTGGAGATCGGGGATGGCGCAAGGAACGTAGAC
GAGGAGCCGTTCTCCGGACCGTGCGCCTTTATGCCGGGAAACGAGGCG
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