mRNA_H-canaliculatus_M_contigs9528.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSE6_ECTSI) HSP 1 Score: 185 bits (469), Expect = 1.440e-58 Identity = 89/116 (76.72%), Postives = 99/116 (85.34%), Query Frame = 1
Query: 1 MSSPGTGGADGPPGFFLVIANISKRCNIRSLIASAVAFGAEVLVVGQPKFSIDTHAPKGLLPAGFTVSRFADLPSCRDYVHSRGGTLVGVEIGDGARNVDEEPFSGPCAFMPGNEA 348
M+ P + PP FLVIANISKRCNIRSLIASAVAF AE+L+VGQPKFSI+THAP+GL P G T +RF+DLPSCRDYVHSRGGTL+GVEIG GARN+DEEPF G CAFMPGNEA
Sbjct: 1 MNKPVNAASSVPPVLFLVIANISKRCNIRSLIASAVAFQAEILIVGQPKFSIETHAPRGL-PPGITFTRFSDLPSCRDYVHSRGGTLIGVEIGGGARNIDEEPFLGTCAFMPGNEA 115
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Match: SpoU_methylase (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWR0_9PHAE) HSP 1 Score: 129 bits (324), Expect = 2.170e-35 Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 1
Query: 133 VGQPKFSIDTHAPKGLLPAGFTVSRFADLPSCRDYVHSRGGTLVGVEIGDGARNVDEEPFSGPCAFMPGNE 345
VGQPKFSI+THAP+GL P G T +RF+DLPSCRDYVHSRGGTL+GVEIG GARN+DEEPF G CAFMPGNE
Sbjct: 40 VGQPKFSIETHAPRGL-PPGITFTRFSDLPSCRDYVHSRGGTLIGVEIGGGARNIDEEPFLGTCAFMPGNE 109
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H1E1_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 8.510e-21 Identity = 44/96 (45.83%), Postives = 67/96 (69.79%), Query Frame = 1
Query: 46 FLVIANISKRCNIRSLIASAVAFGAEV-LVVGQPKFSIDTHAPKGLLP------AGFTVSRFADLPSCRDYVHSRGGTLVGVEIGDGARNVDEEPF 312
+LVI N++K+ NIR+LI+SA AFG +V L+VGQPKF ++THAP G++ GF++ R A+L C ++++R TL G+EI DGA +++ F
Sbjct: 4 YLVITNVAKKQNIRNLISSAFAFGIDVVLIVGQPKFELETHAPPGIVELMASGSVGFSIVRLANLGDCVHFLNARKATLYGIEIVDGASSIENINF 99
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Match: SpoU_methylase (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YH37_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 4.510e-18 Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 1
Query: 46 FLVIANISKRCNIRSLIASAVAFGA-EVLVVGQPKFSIDTHAPKGLLPAGFTVSRFADLPSCRDYVHSRGGTLVGVEIGDGARNVDEEPFSGPCAFMPGNE 345
FL++ N+ K NI+S++ SA AFGA EV VVGQ KF H L V+R + L CR RG +VGVEI DGAR++ + PF+G AF+ GNE
Sbjct: 20 FLIVNNVQKIKNIKSMLVSASAFGASEVFVVGQRKFEFAAHESFLLQALRVPVTRVSSLADCRALCIERGIRIVGVEIIDGARSILDAPFTGDTAFIMGNE 120
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Match: Alpha/beta (knot methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT9_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.800e-16 Identity = 46/110 (41.82%), Postives = 63/110 (57.27%), Query Frame = 1
Query: 37 PGFFLVIANISKRCNIRSLIASAVAFGAEVLVVGQPKFSIDTHAPKGLLPAGFTVSRFADLPSCRDYVHSRGGTLVGVEIGDGARNVDEEPFSGP-------CAFMPGNE 345
P +L+I +ISK+ N+R L+ A AFGA V+VVGQP + P V+RF L +++ +RG +VGVEI D AR+V+EEPF G AF+ GNE
Sbjct: 35 PCCYLIINHISKKHNVRKLLGGAAAFGARVVVVGQPTYDF---------PERHAVTRFHALSDACNWLRARGIAVVGVEIADDARSVEEEPFDGAGCGRGGGIAFLMGNE 135
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Match: Obp33pep (like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UCB5_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 8.090e-15 Identity = 51/127 (40.16%), Postives = 68/127 (53.54%), Query Frame = 1
Query: 37 PGFFLVIANISKRCNIRSLIASAVAFGAEVLVVGQPKFSIDTHAPKGLLPA---GFTVS---------RF-ADLPSCRDYVHSRGGTLVGVEIGDGARNVDEEPFS-----------GPCAFMPGNE 345
P L++ +ISKR N+R+L+ SA AFGAEVLVVGQP F+ +H P+ L A G S RF L CRD + + + GVEIG+ A NV+E P++ G A + GNE
Sbjct: 34 PRLLLLLHHISKRQNVRTLLTSAAAFGAEVLVVGQPSFNETSHVPRRLAEALTQGENASICQPQPLYRRFHGTLEECRDQLREQNVQIWGVEIGEAAVNVEEIPWATSASKWEKEGRGGIALLLGNE 160
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Match: Probable (tRNA (Guanosine(18)-2'-O)-methyltransferase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9SQG2_9CHLO) HSP 1 Score: 75.9 bits (185), Expect = 3.020e-14 Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 1
Query: 16 TGGADGPPGFFLVIANISKRCNIRSLIASAVAFGA-EVLVVGQPKFSIDTHAPKGLLPAGFTVSR-FADLPSCRDYV-HSRGGTLVGVEIGDGARNVDEEPFSGPCAFMPGNE 345
+G A PPG +L++ N+SKR NI +L+ SA AFG EV +VG +F+ T G A + R F L C Y+ RG ++GVEI + A+ + PFSGP AFM GNE
Sbjct: 26 SGAAVSPPGCYLIVHNVSKRHNIGTLVRSAAAFGVTEVCLVGARQFN--TFGSHG--SADYVKYRHFPSLQECCRYLKEDRGCRVMGVEITEDAQPIHAHPFSGPTAFMLGNE 134
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HIS8_POLGL) HSP 1 Score: 70.9 bits (172), Expect = 1.780e-12 Identity = 40/104 (38.46%), Postives = 60/104 (57.69%), Query Frame = 1
Query: 37 PGFFLVIANISKRCNIRSLIASAVAFG-AEVLVVGQPKFSIDTHAPKGLLPAGFTVSRFADLPSCRDYVHSRGGTLVGVEIGDGARNVDEEPFSGPCAFMPGNE 345
P +L++ N+ K+ N +L+ SA AFG +EV++VG K + T +G T F L + ++++ RG + G+EI D A+ V PFSGP AFM GNE
Sbjct: 26 PESYLLLFNVGKKQNFGTLLRSACAFGVSEVVIVGAKKLA--TFGNQGTAQHAQT-RHFDSLEAAKEFLTGRGARICGIEIDDNAKPVSTHPFSGPTAFMLGNE 126
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Match: SpoU_methylase (domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YY40_COCSC) HSP 1 Score: 70.9 bits (172), Expect = 2.060e-12 Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = 1
Query: 25 ADGPPGFFLVIANISKRCNIRSLIASAVAFGA-EVLVVGQPKFS-IDTHAPKGLLPAGFTVSRFADLPSCRDYV-HSRGGTLVGVEIGDGARNVDEEPFSGPCAFMPGNE 345
A+ PG +L++ N+SKR NI +L+ SA AF EV +VG +F+ +H + F L C Y+ +G ++GVEI + A+ + PFSGP AFM GNE
Sbjct: 24 AESSPGCYLIVHNVSKRHNIGTLVRSAAAFSVTEVCLVGARQFNTFGSHGSADYV----NYRHFPSLQECCHYLKQDKGCRIMGVEIAEDAQPIHAHPFSGPTAFMLGNE 129
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PU43_9DINO) HSP 1 Score: 68.2 bits (165), Expect = 1.790e-11 Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 1
Query: 37 PGFFLVIANISKRCNIRSLIASAVAFG-AEVLVVGQPKFSIDTHAPKGLLPAGFTVSRFADLPSCRDYVHSRGGTLVGVEIGDGARNVDEEPFSGPCAFMPGNE 345
P FL++ N+ KR N +L+ SA AFG ++V VVG K + T +G A F L + R + +RG + G+EI D A V+ PF+GP AFM GNE
Sbjct: 15 PASFLILHNVGKRQNFGALLRSACAFGVSDVYVVGAKKLA--TFGNQGTASAA-PQRHFETLDAARADLAARGARVCGIEIDDTAVPVNRHPFTGPTAFMLGNE 115 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9528.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs9528.1.1 >prot_H-canaliculatus_M_contigs9528.1.1 ID=prot_H-canaliculatus_M_contigs9528.1.1|Name=mRNA_H-canaliculatus_M_contigs9528.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=116bp MSSPGTGGADGPPGFFLVIANISKRCNIRSLIASAVAFGAEVLVVGQPKFback to top mRNA from alignment at H-canaliculatus_M_contigs9528:361..1828- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs9528.1.1 ID=mRNA_H-canaliculatus_M_contigs9528.1.1|Name=mRNA_H-canaliculatus_M_contigs9528.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1468bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9528:361..1828- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9528:361..1828- >mRNA_H-canaliculatus_M_contigs9528.1.1 ID=mRNA_H-canaliculatus_M_contigs9528.1.1|Name=mRNA_H-canaliculatus_M_contigs9528.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9528:361..1828- (Hapterophycus canaliculatus Oshoro7m male)back to top |