mRNA_H-canaliculatus_M_contigs9489.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9489.1.1 vs.
Match: Similar (to CG4672-PA isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL0_ECTSI) HSP 1 Score: 478 bits (1231), Expect = 5.350e-166 Identity = 238/294 (80.95%), Postives = 269/294 (91.50%), Query Frame = 1
Query: 1 QAVLPRSFKAPRVGHTTLAVTILAAAYLLGLPAFLDKLNRAHAYGQLTSIDLRSGCNDDHLHSCQGAQVVYRASSVLFLYFVLMATVGGAIHYVYANLWPLKFLAVAGSLGGALFLPEPGLFGVYAEIARVLSVVWMLFQGFLVLDFAHDIHDAIGVKADEQDSISGSSTSIFSSGWRILYLILSALCLVATGVGLASIFTEYAGCTLGATLVGITLSVGVVTTVLSLVESVGIGLLPPSILFAHSTFLCWYALSSHPDPTCNPSASADLLSAPGKTVGVAVSVLLLMSTVAWI 882
+AVLPRSFKAPRVGHTTLAVT+LAAA+++GLP FLDKLN+AHAYGQL S+DLRSGCNDD LHSCQGAQVVYRASSVLFLYFVLMAT GGA+HY+YANLWPLKFLAVAG +GG LFLP+P LFGVYAE+ARVLS+VWMLFQGFLVLDFAHD+HDAIG KA+EQDSISGSS+SI SS WRILYL+LS CL ATG+GLA++FT + GCTLGA+L GITL+VGVVTTVLSLVESVGIGLLPPSILFAHSTFLCWYA+SSHPD CNP A+ D+ SA GK VGV +S+ +L++TVAWI
Sbjct: 23 KAVLPRSFKAPRVGHTTLAVTMLAAAHVMGLPFFLDKLNQAHAYGQLKSVDLRSGCNDDFLHSCQGAQVVYRASSVLFLYFVLMATAGGAVHYIYANLWPLKFLAVAGGVGGMLFLPDPALFGVYAEVARVLSLVWMLFQGFLVLDFAHDVHDAIGAKAEEQDSISGSSSSICSSWWRILYLVLSGACLAATGLGLATLFTGHVGCTLGASLAGITLAVGVVTTVLSLVESVGIGLLPPSILFAHSTFLCWYAMSSHPDQACNPYAADDVPSASGKGVGVVISLAILVATVAWI 316
BLAST of mRNA_H-canaliculatus_M_contigs9489.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SSW0_9STRA) HSP 1 Score: 162 bits (411), Expect = 3.050e-43 Identity = 97/258 (37.60%), Postives = 146/258 (56.59%), Query Frame = 1
Query: 25 KAPRVGHTTLAVTILAAAYLLGLPAFLDKLNRAHAYGQLTSIDLRSGCNDDHLHSCQGAQVVYRASSVLFLYFVLMATVGGAIHYVYANLWPLKFLAVAGSLGGALFLPEPGLFGVYAEIARVLSVVWMLFQGFLVLDFAHDIHDAIGVKADEQDSISGSSTSIFSSGWRILYLILSALCLVATGVGLASIFTEYAGCTLGATLVGITLSVGVVTTVLSLVESVGIGLLPPSILFAHSTFLCWYALSSHPDPTCNPSA 798
+A R H + + A +LG +F + +N Y + TSI+L + C D + + C Q++YRAS L + F++++ + W LK L + SL + E F +AE AR++S W+L Q L+LDFAHDIHD + + A E++ + I+ + YL++S L GVGLA +F +Y GC LG +TL +GV+TT++SL+ V GLL P I+F +S FLCWYAL S+PD +CNP+A
Sbjct: 34 QATRFSHLLIILITFTIAIVLG-QSFPNDIN---GYNEYTSINLTNNCIDSYENECIYRQLIYRASFSLVVLFIILSITSYYSDSINKGFWVLK-LGLTVSLFIGFWWAENAFFSGWAEAARIISFFWLLGQSLLLLDFAHDIHDVMLLTALEEEKEGNDTRHIYGT-----YLLMSIGSLTCAGVGLAYLFIDYTGCRLGMFFTVLTLLIGVITTIVSLLNVVNKGLLTPCIMFGYSVFLCWYALLSNPDESCNPTA 281
BLAST of mRNA_H-canaliculatus_M_contigs9489.1.1 vs.
Match: Serine (incorporator-like n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1N2_9STRA) HSP 1 Score: 123 bits (308), Expect = 6.620e-29 Identity = 86/256 (33.59%), Postives = 134/256 (52.34%), Query Frame = 1
Query: 58 VTILAAAYLLGLPAFLDKLNRAHAYGQLTSIDLRSGCNDDHLHSCQGAQVVYRASSVLFLYFVLMATVGGAIHYVYAN---LWPLKFLAVAGSLGGALFLPEPGLFGVYAEIARVLSVVWMLFQGFLVLDFAHDIHDAI--GVKADEQD-----SISGSSTSIFSSG-WRILYLILSALCLVATGVGLASIFTEYAGCTLGATLVGITLSVGVVTTVLSLVESVGIGLLPPSILFAHSTFLCWYALSSHPDPTCNP 792
+T LA L + A L RA G L + GC+ C G Q VYRAS + +F+LM + +AN LW + A L + F+P F YA +ARV SVV+++ Q +++DF +++ D + ++A E D S+ GSST S W+ +YL + +CL G+A ++ Y GC++G TL ++ T +S+ E G G++PPSI+ A++ LC+ AL+++PD TCNP
Sbjct: 1 MTRLAYTALFFVNALLATAMRAFGDGWLKHLWSFDGCDTASDVHCVGNQAVYRASFAICCFFLLMVVLSALSERGHANCCCLWCFQLPAYVTLLVLSFFIPS-AFFDGYAWLARVASVVFLVLQIIIIIDFMYNVRDYLLDRIEAAEADAETTASLLGSSTPANKSWVWKSVYLTIVLVCLGGAFTGIALLYKYYGGCSIGMAFTTTTLVTILIATGISITEWAGTGIMPPSIVAAYAVLLCYQALAANPDATCNP 255
BLAST of mRNA_H-canaliculatus_M_contigs9489.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXD2_9STRA) HSP 1 Score: 112 bits (280), Expect = 6.970e-25 Identity = 86/291 (29.55%), Postives = 147/291 (50.52%), Query Frame = 1
Query: 58 VTILAAAYLLGLPAFLDKLNRAHAYGQLTSIDLRSGCNDDHLHSCQGAQVVYRASSVLFLYFVLMATVGGAIHYVYAN---LWPLKFLAVAGSLGGALFLPEPGLFGVYAEIARVLSVVWMLFQGFLVLDFAHDIHDAI-----GVKADEQDSIS---GSSTSIFSSG------WRILYLILSALCLVATGVGLASIFTEYAGCTLGATLVGITLSVGVVTTVLSLVESVGIGLLPPSILFAHSTFLCWYALSSHPDPTCNPSASADLLSAPGKTVGVAVSVLLLMSTVAW 879
+T LA L + A L RA G L + CN +C G Q V+RAS + +F L+ + ++N LW + L + F+P G F YA +AR+ S+ +++ Q +++DF +++ D + +AD + SIS G++ ++ S+ W+ +YL++ + L G+ ++ Y C +G T ITL + +++T +S+ E G GL+PPSI+ A++ LC+ AL+S+PD TCN + D LS T+ S +L +T+ W
Sbjct: 1 MTRLAYTALFFVNALLAMALRAFGNGWLKHLWSFEDCNIQADPNCVGNQAVFRASFAICCFFALVTILSIFSERGHSNFCCLWCFQLPCYVTILVLSFFIPN-GFFIGYAWLARITSIFFLVLQIIIIIDFMYNVRDYLIDKIDAAEADTETSISLLSGTNGTVISTPKDNSWIWKSVYLVIVFVALGGALTGIGLLYHYYDSCPVGMTFTTITLVMILISTGISITEWAGTGLMPPSIVAAYAVLLCYQALASNPDVTCNTLLTFDALSTSNTTI----SAILGAATITW 286
BLAST of mRNA_H-canaliculatus_M_contigs9489.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T0L3_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.170e-16 Identity = 65/229 (28.38%), Postives = 111/229 (48.47%), Query Frame = 1
Query: 133 GQLTSIDLRSGCNDDHLHSCQGAQVVYRASSVLFLYFVLMATVGGAIHYVYANLWPLKFL------AVAGSLGGALFLPEPGLFGVYAEIARVLSVVWMLFQGFLVLDFAHDIHDAIGVKADEQD-SISGSSTSIFSSG----WRILYLILSALCLVATGVGLASIFTEYAGCTLGATLVGITLSVGVVTTVLSLVESVGIGLLPPSILFAHSTFLCWYALSSHPDPTC 786
G LTS S C+ CQG Q+++R S + ++F+ A + +V +K L + L G+ ++P F Y RV S ++LFQ F ++ ++ I D + K + + S G+ +G W+ +L + A LVA G G+A ++ ++ C+LG IT+ + T++ + + +GLLPP + A+ +CW AL S+PD TC
Sbjct: 8 GLLTSFGTFSDCDATDSEFCQGNQMIFRTSFSISMFFLTRALLS-RFGWVQPRRRAIKILIWVEIPVLIALLVGSFYIPST-FFDGYVPFTRVASGFFILFQIFSIVSVSYQIRDTLLNKIENAEKSAEGAMGKGSCAGSVCLWKTAFLGVCAGSLVAVGAGIAYLYMRFSDCSLGLAFTTITIVAAGLLTIICISSWLEVGLLPPCAISAYLVLMCWQALVSNPDKTC 234
BLAST of mRNA_H-canaliculatus_M_contigs9489.1.1 vs.
Match: TMS (membrane protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XR85_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.460e-16 Identity = 65/234 (27.78%), Postives = 116/234 (49.57%), Query Frame = 1
Query: 133 GQLTSIDLRSGCNDDHLHSCQGAQVVYRASSVLFLYFVLMATVGG---------AIHYVYANLWPLKFLAVAGSLGGALFLPEPGLFGVYAEIARVLSVVWMLFQGFLVLDFAHDIHDAIGVKADEQDSIS--GSSTSIFSSG----WRILYLILSALCLVATGVGLASIFTEYAGCTLGATLVGITLSVGVVTTVLSLVES-VGIGLLPPSILFAHSTFLCWYALSSHPDPTC 786
G L+S + C + SC+G Q+++RAS +F++FV+ A + AI + +W ++ + G L G+ ++P F Y RV S ++LFQ F ++ ++ I D + + + I+ G +G W+ ++ + A LV G G+A ++ + C+LG IT+ + ++ +V S + +GLLPP + A+ +CW AL S+PD TC
Sbjct: 37 GLLSSFGTFADCEETENPSCKGNQMIFRASFSIFMFFVMRALLSRFGWKQPRRLAIRIL---VW-VEIPVLIGLLVGSFYIPN-SFFDGYVHFTRVASGFFILFQIFSIVSVSYQIRDTLLTSIENAEKITAQGDRGEGICAGNVCLWKTAFIGVCAGSLVTVGAGVAFLYMRFGYCSLGLVFTTITIVAAGLLIIVCIVSSWLEVGLLPPCAISAYLVLMCWQALVSNPDKTC 265
BLAST of mRNA_H-canaliculatus_M_contigs9489.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GD00_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 4.190e-16 Identity = 63/222 (28.38%), Postives = 117/222 (52.70%), Query Frame = 1
Query: 163 GCNDDHLHSCQGAQVVYRASSVLFLYFVLMATVGGAIHYVYANLWPLKFLAVAGSLGGALFLPEPGLFGVYAEIARVLSVVWMLFQGFLVLDFAHDIHDAIGVKA----DEQDSISGSSTSIFSSGWRILYLILS---ALCLVATGVGLASIFTEYAG-CTLGATLVGITLSVGVVTTVLSLVESVG-IGLLPPSILFAHSTFLCWYALSSHPDPTCNPSAS 801
G + +C G Q V+R S L ++F+ M +G + W +K L G+ F+P +F YA+IARV+S ++++ +++DFA+ + + + +A +E S S+ W I+YL+++ + ++ + +G+ + G C +L+ +TL G++ TV+S ++ G GLLPP +++A+ +L W A +S+P CNP AS
Sbjct: 80 GSTGNFQQACFGNQAVFRVSFALAVFFICMM-LGSMSDAFDRSYWGIKIGMYLLLLVGSFFIPNE-VFNTYADIARVVSALFLILSVIILVDFAYVVQEYLTGRAQKYSEEMVSAGYDEPGTCSNSWLIVYLVVAFVLGVTVLGSLIGMYAFAVHATGSCGGSISLLSLTLIAGLILTVMSTLDMFGGRGLLPPLVVWAYCCYLVWSAFTSNPTLGCNPLAS 299
BLAST of mRNA_H-canaliculatus_M_contigs9489.1.1 vs.
Match: Uncharacterized (protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2R728_PHYPN) HSP 1 Score: 88.2 bits (217), Expect = 4.890e-16 Identity = 61/229 (26.64%), Postives = 113/229 (49.34%), Query Frame = 1
Query: 133 GQLTSIDLRSGCNDDHLHSCQGAQVVYRASSVLFLYFVLMATVG--GAIHYVYANLWPLKFLAV---AGSLGGALFLPEPGLFGVYAEIARVLSVVWMLFQGFLVLDFAHDIHDAI--GVKADEQDSISGSSTSIFSSG----WRILYLILSALCLVATGVGLASIFTEYAGCTLGATLVGITLSVGVVTTVLSLVESVGIGLLPPSILFAHSTFLCWYALSSHPDPTC 786
G L+S S C+ + SCQG Q+++RAS + ++F++ A + G + + L ++ + L G+ ++P F Y RV S ++LFQ F ++ ++ + D + ++ E+ + G +G W+ +L + A LVA G +A ++ + C+LG IT+ + ++ + + +GLLPP + A+ +CW AL S+PD TC
Sbjct: 40 GLLSSFGTFSECDSADIESCQGNQMIFRASFSISMFFLMKALLSRFGWVQPRQRTMMILVWVEIPVLVALLVGSFYIPNT-FFDGYVPFTRVASGFFILFQIFSIVSVSYQVRDTLLNAIENAEKAATEGKLDKGSCAGSVCLWKTAFLGVCAGSLVAVGAAIAYLYMRFGDCSLGLAFTTITIVAASLLIIVCISSWLEVGLLPPCAISAYLVLMCWQALVSNPDKTC 267
BLAST of mRNA_H-canaliculatus_M_contigs9489.1.1 vs.
Match: Uncharacterized (protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZCM1_PHYSP) HSP 1 Score: 86.3 bits (212), Expect = 2.330e-15 Identity = 60/228 (26.32%), Postives = 112/228 (49.12%), Query Frame = 1
Query: 139 LTSIDLRSGCNDDHLHSCQGAQVVYRASSVLFLYFVLMATVGGAIHYVYANLWPLKFL------AVAGSLGGALFLPEPGLFGVYAEIARVLSVVWMLFQGFLVLDFAHDIHDAIGVKAD--EQDSISGSSTSIFSSG----WRILYLILSALCLVATGVGLASIFTEYAGCTLGATLVGITLSVGVVTTVLSLVESVGIGLLPPSILFAHSTFLCWYALSSHPDPTC 786
L+S S C++ SCQG Q+++RAS + ++F++ A + + +V +K L + L G+ ++P F Y RV S ++LFQ F ++ ++ + D + + + E+ G + S F +G W+ +L + A+ +V G G+ ++ +A C LG IT+ + + + + +GLLPP + A+ +CW AL S+P +C
Sbjct: 42 LSSFGTFSDCDETDSASCQGNQMIFRASFSISMFFLMRALLS-RLGWVQPRARAIKILMWVEVPVLIALLVGSFYIPN-SFFDGYVPFTRVASGFFILFQIFSIVSVSYQVRDTLLERLERAEKAEAQGEARSGFCAGSVCMWKTAFLGVCAVSMVCIGSGITYLYMRFADCDLGLAFTTITIIAAGLLIIACVSPWIEVGLLPPCAISAYLVLMCWQALVSNPVKSC 267
BLAST of mRNA_H-canaliculatus_M_contigs9489.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AIR5_9EUKA) HSP 1 Score: 85.1 bits (209), Expect = 5.620e-15 Identity = 59/222 (26.58%), Postives = 114/222 (51.35%), Query Frame = 1
Query: 166 CNDDHLHSCQGAQVVYRASSVLFLYFVLMATVG-----GAIHYVYANLWPLKFLAVAGSLGGALFLPEPGLFGVYAEIARVLSVVWMLFQGFLVLDFAHDIHDAIGVKADEQDSISGSSTSIFSSGWRILYLILSALCLVATGVGLASIFTEYA--GCTLGATLVGITLSVGVVTTVLSLVE-SVGIGLLPPSILFAHSTFLCWYALSSHPDPTCNPSASAD 807
C+ D+ C+G VYR S L L+F +M G+ H ++ W K L + ++GG +F+P +F YA +AR ++ ++ LF + +DF + ++A K + +D G + ++ + L++S + G A ++ +Y GC AT + L +G+VT+++ + + + + +++ ++T++C ALSS P+P CNP+ D
Sbjct: 70 CSSDN---CKGYWAVYRISFSLALFFFMMMLFTMCRSKGSTH-LHLGFWIAKILILLATVGGTIFMPND-VFAAYAWVARFVAPIFNLFMLVMFIDFGYSTNEAFIEKDEREDVFFGCPNG--GNTYKAVLLLMSVGLYASAFTGTAFMYAKYPQDGCPFNATGITTNLIIGIVTSIIGMTKVAPHASIFVSALVTGYTTWMCSSALSSWPEPDCNPTLEHD 284 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9489.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs9489.1.1 >prot_H-canaliculatus_M_contigs9489.1.1 ID=prot_H-canaliculatus_M_contigs9489.1.1|Name=mRNA_H-canaliculatus_M_contigs9489.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=294bp QAVLPRSFKAPRVGHTTLAVTILAAAYLLGLPAFLDKLNRAHAYGQLTSIback to top mRNA from alignment at H-canaliculatus_M_contigs9489:240..4244+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs9489.1.1 ID=mRNA_H-canaliculatus_M_contigs9489.1.1|Name=mRNA_H-canaliculatus_M_contigs9489.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4005bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9489:240..4244+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9489:240..4244+ >mRNA_H-canaliculatus_M_contigs9489.1.1 ID=mRNA_H-canaliculatus_M_contigs9489.1.1|Name=mRNA_H-canaliculatus_M_contigs9489.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=882bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9489:240..4244+ (Hapterophycus canaliculatus Oshoro7m male)back to top |