mRNA_H-canaliculatus_M_contigs9454.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9454.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9454.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9454.1.1 vs.
Match: Polymorphic (Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.170e-44
Identity = 74/129 (57.36%), Postives = 90/129 (69.77%), Query Frame = 1
Query:    1 CCPCTCLDGPLHSCSDNGFECLYPDC-DQGFASE--VCFEELAGDSHCDAPNNNLACGYDGGDCCQCSCVGSRDYRCGVDG-FACLDPICFDPATVGEFPGCAGDWLTIGDGSCDGINNNAACGFDGGD 375
            CC CTC DGPLH C+D+ F+C+YPDC D    S   VC+E++ GD  C+  NN+ ACGYDGGDCC+CSCV    + CG    F C DP C+DPA V EFP C GDW  IGDG+C+  NN A+CG+DGGD
Sbjct:   61 CCSCTCNDGPLHLCADSDFDCMYPDCGDPAVTSSDAVCYEDVQGDGMCNEENNSAACGYDGGDCCECSCVDGPLFECGSFSIFDCRDPACYDPALVAEFPDCTGDWFKIGDGACNPENNIASCGYDGGD 189          
BLAST of mRNA_H-canaliculatus_M_contigs9454.1.1 vs.
Match: Polymorphic (Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 5.840e-42
Identity = 72/138 (52.17%), Postives = 86/138 (62.32%), Query Frame = 1
Query:    1 CCPCTCLDGPLHSCSDNGFECLYPDC----DQGFASEVCFEELAGDSHCDAPNNNLACGYDGGDCCQCSCVGSRDYRCGVDGFACLDPICFDPATVGEFPGCAGDWLTIGDGSCDGINNNAACGFDGGDV---SCLAT 393
            CC C+C+DGP + C   GF CL PDC    +    +  C E    D +CD+ NN  +C YDGGDCC+CSCV   DY CG +GF+CLDP CFDPA V EFP C   WL +GDG CD   N A+CG+DGGD    SC  T
Sbjct:  113 CCECSCIDGPDYGCGSIGFACLDPDCGNTTETAPENTTCEESWMNDGYCDSSNNYPSCDYDGGDCCECSCVDGHDYECGSNGFSCLDPACFDPALVAEFPDCDAGWLGLGDGFCDSELNTASCGWDGGDCCVCSCNGT 250          
BLAST of mRNA_H-canaliculatus_M_contigs9454.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G300_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.210e-23
Identity = 46/109 (42.20%), Postives = 61/109 (55.96%), Query Frame = 1
Query:   52 GFECLYPDCDQGFASEVCFEELAGDSHCDAPNNNLACGYDGGDCCQCSCVGSRDYRCGVDGFACLDPICFDPATVGEFPGCAGDWLTIGDGSCDGINNNAACGFDGGDV 378
            G    Y  C  G   ++      G+  CDA NN+ +CG+DGGDCC C+C  +  Y C  + F CL P+C D +   E   C  DW +  DG CD +NNN +CG+DGGDV
Sbjct:   20 GAAAQYDSCVNGTIDDI------GNGRCDAENNSPSCGFDGGDCCSCTCTDTVLYSCADNEFDCLYPLCGDDSAASEEEACVEDWQS--DGFCDDVNNNYSCGYDGGDV 120          
BLAST of mRNA_H-canaliculatus_M_contigs9454.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S4_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 4.290e-21
Identity = 61/142 (42.96%), Postives = 75/142 (52.82%), Query Frame = 1
Query:    1 CCPCTCLD--GPLHSCS--DNGFECLYPDC----DQGFASEV---CFEELAGDSHCDAPNNNLACGYDGGDCCQCSCVGS--RDYRCGVDGFACLDP----ICFDPATVGEFPGCAGDWLTIGDGSCDGINNNAACGFDGGD 375
            CC CTC+      +SCS  D+GF C+ P      D     E    CF    GD  CD  NNN  CGYDGGDCC+C+CV +   DY C  +  AC+DP    +  D  TV     C G   ++G+G CD  NNN  CG+DGGD
Sbjct:   11 CCECTCVSVYDDDYSCSSTDSGFACVDPTAPCVDDDDITIEQALNCFPREFGDGWCDQENNNEICGYDGGDCCECTCVNAWDDDYSCAANS-ACIDPSAPCVDDDDVTVDMVENC-GYVGSVGNGWCDEENNNEGCGYDGGD 150          
BLAST of mRNA_H-canaliculatus_M_contigs9454.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.400e-19
Identity = 66/150 (44.00%), Postives = 78/150 (52.00%), Query Frame = 1
Query:    1 CCPCTCLD---GPLH-SCSDNG--FECLYPDC----DQGF---ASEVCFEELAGDSHCDAPNNNLACGYDGGDCCQCSCVGSRD--------YRCGVDGFACLDP----ICFDPATVGEFPGCAGDWLTIGDGSCDGINNNAACGFDGGD 375
            CC CTC +   G  H  CS NG  F C+ PD     + G    AS+ C     GD  CD  NNN  CGYDGGDCC+C+C    D          CG +GFAC+DP    +  D  TV     C  D + +GDG CD  NNNAAC +DGGD
Sbjct:   57 CCECTCQNPQGGDHHWICSKNGSGFACVDPDAPCYAEDGVTVEASQECDFWDLGDGWCDQVNNNELCGYDGGDCCECTCEVPTDDDWDNDLYVACG-EGFACIDPSAPCVNDDDITVDVDESC--DAVGMGDGYCDMDNNNAACAYDGGD 203          
BLAST of mRNA_H-canaliculatus_M_contigs9454.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 5.800e-19
Identity = 62/155 (40.00%), Postives = 77/155 (49.68%), Query Frame = 1
Query:    1 CCPCTCL----DGPLHSCSDNG--FECLYPDC----DQGFASEV---CFEELAGDSHCDAPNNNLACGYDGGDCCQCSCVG---SRDYRCGVDG--FACLDP----ICFDPATVGEFPGCAGDWLTIGDGSCDGINNNAACGFDGGDV---SCLA 390
            CC CTC     D     CS +G  F C+ PD     D     E+   C     G+ +CD  NNN  CGYD GDCC+C+CV      D+ C  DG  FAC+DP    +  D  T+     C G    +GDG CD  NNN  CG+DGGD    +C+A
Sbjct:   50 CCECTCQNPWGDDDEWFCSKDGYGFACIDPDAPCVDDDDITIEIAQNCVTSDLGNGYCDEDNNNEICGYDFGDCCECTCVSPWDDDDWYCSSDGSGFACIDPAAPCVDDDDVTIDMVENC-GYVRGLGDGWCDDWNNNELCGYDGGDCCECTCVA 203          
BLAST of mRNA_H-canaliculatus_M_contigs9454.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVP4_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.420e-18
Identity = 63/158 (39.87%), Postives = 78/158 (49.37%), Query Frame = 1
Query:    1 CCPCTC-LDGPL-HSCS--DNGFECLYPDC--DQGFASEVCFEELAG----DSHCDAPNNNLACGYDGGDCCQCSCVGSRDY-------RCGVDGFACLDP----ICF------DPATVGEFPGCAGDWLTIGDGSCDGINNNAACGFDGGDVSCLAT 393
            CC CTC +D  + H C   ++G++C  PD   D   A+    E + G    D +CD   N   CGYDGGDCC+C+C   RDY        CG  G+ CLDP     C        PA   ++P C G    IGDG CD  NNN  C +DGGD  C  T
Sbjct:  190 CCACTCGMDAEVDHECGLLNDGYDCRDPDVPEDCNLANFAQCEGMNGYDWQDGYCDDDLNTAECGYDGGDCCRCTC---RDYDSWGYYSSCGYYGYDCLDPEAPSSCSTDSPTPSPAAGTDWPECEGYLFEIGDGHCDYYNNNEECDWDGGDC-CACT 343          
BLAST of mRNA_H-canaliculatus_M_contigs9454.1.1 vs.
Match: LNR (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L262_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.570e-18
Identity = 44/96 (45.83%), Postives = 53/96 (55.21%), Query Frame = 1
Query:   94 SEVCFEELA-GDSHCDAPNNNLACGYDGGDCCQCSCVGSRDYRCGVDGFACLDP----ICFDPATVGEFPGCAGDWLTIGDGSCDGINNNAACGFD 366
            S VCF+E A GD +CD   N   CGYDGGDCC+C+CV   +Y CG  G+AC+DP    +  D  T      C  D   IGD  CD  NN   CG +
Sbjct:   38 SSVCFDESAVGDGNCDRDINFAECGYDGGDCCECTCVAEGEYECGAGGYACIDPAAECVNDDDVTFQIASSCVADM--IGDAYCDEPNNVEECGCE 131          
BLAST of mRNA_H-canaliculatus_M_contigs9454.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 3.760e-18
Identity = 60/149 (40.27%), Postives = 68/149 (45.64%), Query Frame = 1
Query:    1 CCPCTCL--------DGPL------HSCSDNGFECLYPDCDQGFASEVCFEELAG------DSHCDAPNNNLACGYDGGDCCQCSCVGSRDYRCGVDGFACLDPICF----DPATVGEFPGCAGDWLTIGDGSCDGINNNAACGFDGGD 375
            CC CTC         DG L       +C D    C+  D    F  EV  E   G      D  CD  NNN  CGYDGGDCC C+C+    Y CG+ GFAC+DP       D  TV     C     +IGDG CD  NN   C +DGGD
Sbjct:  125 CCSCTCQVPDDGTGDDGSLCGESAVFACIDPDAPCVNDDDFTAFLPEVVKETCGGNIVHLADGDCDQINNNEECGYDGGDCCFCTCLDDF-YECGIRGFACIDPSAECADDDDVTVDTVENCG--VRSIGDGQCDLDNNREECHYDGGD 270          
BLAST of mRNA_H-canaliculatus_M_contigs9454.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR3_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 4.660e-18
Identity = 57/137 (41.61%), Postives = 69/137 (50.36%), Query Frame = 1
Query:    1 CCPCTCL----DGPLHSCSDNGFECLYPD--CDQGFASEVCFEELA--GDSHCDAPNNNLACGYDGGDCCQCSCVGSRDYRCGVDGFACLDP----ICFDPATVGEFPGCAGDWLTIGDGSCDGINNNAACGFDGGD 375
            CC CTC     D P  SC D  F C+ P+  C     +E  FE+    GD  C+  NNN  CGYDGGDCC+C+CV       G   FAC+DP    +  D  T      C  ++L  GDG CD  NN   C +DGGD
Sbjct:   17 CCQCTCGIESDDLPDFSCVD--FACVDPNAPCVDDDVTEGMFEDCFNFGDGFCNDYNNNEQCGYDGGDCCECTCVVDWSAEFGCTEFACIDPTAPCVDDDDVTADALENCMMEYL--GDGYCDTYNNIEICDYDGGD 149          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9454.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Polymorphic1.170e-4457.36Outer membrane protein G/I family n=3 Tax=Ectocarp... [more]
Polymorphic5.840e-4252.17Outer membrane protein G/I family n=1 Tax=Ectocarp... [more]
Uncharacterized2.210e-2342.20protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.290e-2142.96protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.400e-1944.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.800e-1940.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.420e-1839.87protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
LNR2.570e-1845.83domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized3.760e-1840.27protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.660e-1841.61protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9454contigH-canaliculatus_M_contigs9454:2586..3757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LSC0
PFAMsBeta_helix,Chlam_PMP
Model size396
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.92e-45
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854209.2457325-CDS-H-canaliculatus_M_contigs9454:2585..28011696854209.2457325-CDS-H-canaliculatus_M_contigs9454:2585..2801Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9454 2586..2801 -
1696854209.2593377-CDS-H-canaliculatus_M_contigs9454:3577..37571696854209.2593377-CDS-H-canaliculatus_M_contigs9454:3577..3757Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9454 3578..3757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9454.1.1prot_H-canaliculatus_M_contigs9454.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9454 2586..3757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9454.1.1

>prot_H-canaliculatus_M_contigs9454.1.1 ID=prot_H-canaliculatus_M_contigs9454.1.1|Name=mRNA_H-canaliculatus_M_contigs9454.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=132bp
CCPCTCLDGPLHSCSDNGFECLYPDCDQGFASEVCFEELAGDSHCDAPNN
NLACGYDGGDCCQCSCVGSRDYRCGVDGFACLDPICFDPATVGEFPGCAG
DWLTIGDGSCDGINNNAACGFDGGDVSCLAT*
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mRNA from alignment at H-canaliculatus_M_contigs9454:2586..3757-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9454.1.1 ID=mRNA_H-canaliculatus_M_contigs9454.1.1|Name=mRNA_H-canaliculatus_M_contigs9454.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1172bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9454:2586..3757- (Hapterophycus canaliculatus Oshoro7m male)
TGCTGCCCGTGCACCTGCTTGGATGGCCCTCTTCACTCCTGCTCCGACAA CGGCTTCGAATGCTTGTACCCTGACTGTGACCAAGGGTTCGCCTCGGAGG TTTGTTTCGAGGAACTCGCCGGCGATTCTCACTGCGACGCACCGAACAAC AACCTTGCGTGCGGCTACGATGGAGGCGATGTGAGTGCATCGTGATATTT ACCATGTAGCGAAGTCGGGAGACGACATAGATCCTCACGGTACTTGCCGA GAGGATTGTCGTGTCGTGTGTGGTTGCGCTTGTACGCTATATAGGAGAAT ATCCTCGACTATTCGGGGCCTTTGCTAACGAAGGTCCGAAAATCATTTGT GGAAAAAATGGTGCCTGGTATTCATATCGATCTCTTATTGGCCGATCGAC CTTTTTCCGCGGGCGAAAAATACTTGATCATGCATGGAAAAAATTATGGG GTGTTGTTCTTGCAAAATCAATAAATCATTATCGAGGAAGCCGAAACATA TGGAGAGAGGTGCGATGAGATGTGCTGGCCTTTCTTCAGGCGAGGGGGAG GGAGATTGCCAGACAACTGAACGTTTCCTCCGGACCGACATTCTAACGAA CTTAAGGTCGTCGAAGGTCAACACCGAGGGATCGTAACCGTGCCAGCTCG GAAAATCCCTCAGAGGGTGATAAATGTGATGCTCGTTTGCTCAATTGGAC GTCTTTTTCGAGAAATCATTGATGATACTGATATTTTGGGCATTCATTAG TCCTTTTCCGAACATCACTAACAACTGCCTCCATCAGACCTGGGGACGAC GTTGTAGGAGGTTCTGCTCGAGCGCATGCGCACACTGCATTGGCCTTGAA TGATACGAGAGGTACTTCGTTGCTACCCTGATGTTCGGCGACGTCGCTCT GCTCTGTGTCCCACTCTGTGTGTACCCTCACGCTTCTTTCTCCCCCGCTG AATCAGTGCTGCCAATGCTCATGCGTTGGTAGCCGTGACTATAGGTGCGG GGTCGATGGCTTCGCCTGCCTAGATCCGATCTGTTTCGATCCTGCGACTG TTGGTGAGTTCCCTGGCTGCGCGGGTGACTGGTTGACGATCGGGGATGGA TCATGCGACGGTATCAACAACAACGCCGCCTGCGGCTTCGACGGGGGTGA CGTGAGTTGCCTTGCTACCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9454:2586..3757-

>mRNA_H-canaliculatus_M_contigs9454.1.1 ID=mRNA_H-canaliculatus_M_contigs9454.1.1|Name=mRNA_H-canaliculatus_M_contigs9454.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=396bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9454:2586..3757- (Hapterophycus canaliculatus Oshoro7m male)
TGCTGCCCGTGCACCTGCTTGGATGGCCCTCTTCACTCCTGCTCCGACAA
CGGCTTCGAATGCTTGTACCCTGACTGTGACCAAGGGTTCGCCTCGGAGG
TTTGTTTCGAGGAACTCGCCGGCGATTCTCACTGCGACGCACCGAACAAC
AACCTTGCGTGCGGCTACGATGGAGGCGATTGCTGCCAATGCTCATGCGT
TGGTAGCCGTGACTATAGGTGCGGGGTCGATGGCTTCGCCTGCCTAGATC
CGATCTGTTTCGATCCTGCGACTGTTGGTGAGTTCCCTGGCTGCGCGGGT
GACTGGTTGACGATCGGGGATGGATCATGCGACGGTATCAACAACAACGC
CGCCTGCGGCTTCGACGGGGGTGACGTGAGTTGCCTTGCTACCTAG
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