mRNA_H-canaliculatus_M_contigs944.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs944.1.1
Unique NamemRNA_H-canaliculatus_M_contigs944.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs944.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI0_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 1.660e-56
Identity = 118/205 (57.56%), Postives = 145/205 (70.73%), Query Frame = 1 
Query:  130 VAATATGYNSRTFFSAEEASPRGGERATSMPAVKSASYDRSDDSSGDRGLSCRSSKLGATGIPACSPDTPDSSVLA---STRAEGAGGSDDDVTDTDEGVMAKLKDFTEIARRTAAHNEVMRLREHEMAWAARTASEMSLRSEMCALKDDLSRVSGNNAVLQRRCDVLQQENAELGERFAAIAEEKRQVESKARRLLRSDRYRGY 735
            VA T+TG +    +S E          T+   +  ASY R D ++ + G   R +    TG  AC P     SV A   ++RA GA  SDDD+TDTDEGVMA+L +F E+ARRTAAHNEV++LREHEMAWA  TASEMSLRSEMCALKD+ + VSG+ + L++RCDVL++ENAEL ERFA +AEEKRQ+ESKARRLLRSDRYRGY
Sbjct:   65 VATTSTGADGELKYSREA--------LTNKSEIMGASYGR-DGTTPENGADFRRNASLGTGKTAC-PTPSTKSVPAPATASRAAGAATSDDDLTDTDEGVMARLAEFIEMARRTAAHNEVVKLREHEMAWAESTASEMSLRSEMCALKDEYAGVSGDASALRKRCDVLERENAELVERFATMAEEKRQMESKARRLLRSDRYRGY 259
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs944.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.660e-5657.56protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs944contigH-canaliculatus_M_contigs944:2622..5997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Model size738
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_005930.1
Cds size738
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854208.7206748-CDS-H-canaliculatus_M_contigs944:2621..30381696854208.7206748-CDS-H-canaliculatus_M_contigs944:2621..3038Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs944 2622..3038 +
1696854208.7350821-CDS-H-canaliculatus_M_contigs944:3334..33941696854208.7350821-CDS-H-canaliculatus_M_contigs944:3334..3394Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs944 3335..3394 +
1696854208.7478132-CDS-H-canaliculatus_M_contigs944:4838..50141696854208.7478132-CDS-H-canaliculatus_M_contigs944:4838..5014Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs944 4839..5014 +
1696854208.760885-CDS-H-canaliculatus_M_contigs944:5912..59971696854208.760885-CDS-H-canaliculatus_M_contigs944:5912..5997Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs944 5913..5997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs944.1.1prot_H-canaliculatus_M_contigs944.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs944 2622..5997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs944.1.1

>prot_H-canaliculatus_M_contigs944.1.1 ID=prot_H-canaliculatus_M_contigs944.1.1|Name=mRNA_H-canaliculatus_M_contigs944.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=246bp
SSSVTGTGTVGSSTGAGTNMFSCSESVSSQPTSAVAAEVATAAVAATATG
YNSRTFFSAEEASPRGGERATSMPAVKSASYDRSDDSSGDRGLSCRSSKL
GATGIPACSPDTPDSSVLASTRAEGAGGSDDDVTDTDEGVMAKLKDFTEI
ARRTAAHNEVMRLREHEMAWAARTASEMSLRSEMCALKDDLSRVSGNNAV
LQRRCDVLQQENAELGERFAAIAEEKRQVESKARRLLRSDRYRGY*
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mRNA from alignment at H-canaliculatus_M_contigs944:2622..5997+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs944.1.1 ID=mRNA_H-canaliculatus_M_contigs944.1.1|Name=mRNA_H-canaliculatus_M_contigs944.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3376bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs944:2622..5997+ (Hapterophycus canaliculatus Oshoro7m male)
AGCAGCAGCGTCACCGGCACCGGAACCGTTGGCAGCAGCACCGGTGCTGG
CACCAATATGTTTTCCTGCTCCGAATCGGTCAGCAGTCAACCCACTTCGG
CTGTTGCGGCCGAGGTGGCAACAGCGGCGGTAGCTGCCACAGCCACGGGT
TACAACAGCAGGACGTTTTTCAGCGCCGAAGAAGCTTCGCCACGAGGTGG
GGAGCGTGCGACCAGCATGCCAGCAGTGAAAAGCGCGTCCTACGACAGGA
GCGATGATTCCTCGGGTGATCGCGGTCTGTCCTGCCGGAGCTCAAAGTTA
GGCGCAACAGGCATCCCGGCATGTTCTCCCGACACGCCAGACTCCTCCGT
ACTTGCATCTACAAGGGCAGAGGGAGCTGGCGGTAGTGACGACGATGTCA
CTGATACTGATGAGGGTGTGAGTACACCCCGTACACCCTGTCATGGGATT
TTGGCTCGTGGTGCAGTTCATGCTGAGCGGTGTATTGCTTGCCACCCCAC
ACCACGTGTCGCGAACTCGCAGGATATGAGCTGGAAAGAAATGGCATCCA
GGGGTAGTGTGCTCCGCGCTTTAGGGTTGCATGCGCGGTTTGCTGTTGCG
TCTCAAATTGTTGCCCGTCGACGGCCAACGGCCCGGGCGTGTGTTTATTT
CGCCGTGCCGATGGGTATTACAGCATCGGGTTTGAAGCCCATTCGTTTCA
TTACATCAAGCAGGTCATGGCTAAGCTAAAGGATTTCACCGAGATAGCCA
GGCGCACCGCGGCACACAACGAGGTAAGAGCAAGGACAGGTACACCACCG
GATCGAGCGGAGATCCAAACGAAAACGCCACAAAAGCCACGAGCTTGATG
TGCACCAGTCGATCAATCGTTCAGTTCAGCGGGAGAGCACTCGAAAGCGC
GATCTCCAGTTTGTGTGACGCCTACTCCCGTCTTTCAACGATGTTGCGCT
CAATGGAGTCACCACCAAGTTGTCAAACCTTGTTTGCGTCCGCGCGAGGT
GTAACAAGATATCTCGCCGGAAGGAAATTTTAACTTATGGTGCGTCTGAT
GGACATTCGTAGGATGCACCACGATTTGTTTTTACTTCGCCAGGTACATT
CAACGCTATCGCGCCCGGTATGGGTCATGTCTATACCGATGGTCCCCGAA
AAGGCTGCAGAAAGTCCGATACATTCGAACCAACACAGCAGGGCCTCAGA
ACCTGCCCTTGGGCATCACATGATACCCCGCGAGAATCCAACCGTCGGGT
CTCTTGTGAACAGTACGTGCCTTCGACTTGCCTGCAGGATTTTGTTCTGC
TGCATCTCTACCCAAATTAAAACCTCACCCTCGCCTGTAAGCATCAGCGA
AGCGAAGGAGCTATTCCTCAGTATGCAGTTCGATTACTGCCCCGTCAAAG
CCGGTGTATACCCACCCAAACAAGCATGAGTAAGCTCGGTGACAGAATGT
TTATCCGTTCCTCGTAGCTCACGGAGGAGTTCCTGCCGGCACCGTTGTTG
GGGATGATGCCTCTGCCTGGACCAATCGGCTTTGCCGAGCGAGTAGCATC
CACGATCGTTCCAATGAGTCCCGTTCGCCTAGATGACTACATAAATCGTG
CGTTGTGGAATGCAATCCAGGAGCTCTCTAGAGACCTTGCCGCCGAGAAA
CGAAGAGTCACCCAGACTACCCGCAAGCTGGAGCAGAGCAACGTGACATC
CATGGAGCTCAGAGAGTCTCTCGCTTTGGCACAAGACACGGTGTGTGAAG
GAGGCGAAAAGGCTATGTGCGCACTCTGTAGCCTTTTCGCTGTTCTAGAA
GACTTTCACAGCCCTCTCGCGGACACGTTAATTACTTGCTTTCGACCAGG
TGGCCTCCGCCGGCAAAGCCGGTACCCTGTCTCTCGAACACCATGTTTCA
GCTCTCGGTGCATGCACCTGGCGATGAGCCTCACTGGTGAACTGATCCTG
AACATGGAAGGATTGCCCCAATTTTTCGACGTATTATTTTTCATTACCCT
AGCTCACAACAACGCTTCACCAAGAGTAATCACATGCGGACATGCGCGAT
GGCTTCCCCCACCGTTAAGGCTTCATCGGCACCCGCAGCAACGTACCCAC
AGGGAGCCACAACTTCACATGAGTGGAACTCTAGGTATGATATGCTACAA
GTAAAAGACTGCCCCGGTCATATCCCAAACAGCTAATTATTGGCCGTCTT
CTCTCTTCTTCCCGGAGGTGATGAGGCTACGCGAGCACGAGATGGCATGG
GCCGCGCGGACCGCAAGCGAGATGTCGCTGCGGTCGGAGATGTGCGCCTT
GAAGGACGACTTGTCCCGCGTCTCTGGAAACAACGCGGTGCTCCAGAGGA
GGTGCGACGTTCTCCAGCAGGAGAATGCCGAGCTTGGCGAGAGGTGTGCA
CATGCGTTTGCCTCCTTTCTGCTGTTCCCTTGTCGCTGCGCTTGCCCGCT
AGAAGAGCCGGTCTCAGCGGTGCCAAAACTTCGACACTTTCACATGCACG
ATGTTCTATCGCTACGTTTGTACGGAGAGGTCTACGTTTGTGGCCGCCGG
TAGAGATGGAGGTTGCCTTCGCTCTGAGCACGTGAAAGATGAAAGGGCCG
AATGGTAAGTGAGTGAGATATTGTGTCGGAACAAGGCCCAATCCCCCGCA
CATTGGAGCGGTGGGGTCGATTCGTCGATGCAGAAGACGGGCATTCAAAA
GAACGAACCTAAGCTTGTTGCGGCATCGCCTTCGATCGTCGATTCTGCCC
CCCGCTCCCTCCTTCACCCGCCGAGCGATATTTACACCGAAATTCCCGAG
TGCGCGGCTGGGCGATGTGGACCGCACTCCCACTCTCTCGTGTTACGCCA
AAACGACAGTTTCTCCACTATACCGATTATCGGTCCCACCGTCCGCCCTG
TTAGTATTTGATTTTTTGGTGACTTGGAAGACTCCATTCTTTCCTCCATC
AAATTTCGAAGAGTCTACACGAAACGAGTTGATCGTTCTGAAACCATCTA
CGTTGGGTTCCGAAATTCCTTTTGCTCCGAGGAAATCCAAGTCTTGTTCC
GTATATTTTGCAGAGTCCCCTCTCTTCTGTACATGTTTTACTGACGATTT
TCCATTTCACCACAGTAGTCAAGGGTAAGTTGTCTTAGGTTTGTATGGTT
GCCTTTGTGCTCGTCCTACGTGTACCGTGCGTACTCATGCTTCTTCCTTC
TACCGTACACATTTTCTCTTATAGATTCATTTTCTGCTTTTGAGTATCCC
CTCGTGGTTGTGTACCGCTCCGATATTGCTTGATGCTTCAGGTTCGCGGC
AATCGCAGAAGAGAAGCGGCAGGTGGAGTCGAAGGCGCGCCGGCTGCTGC
GGAGCGACAGATACCGTGGCTACTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs944:2622..5997+

>mRNA_H-canaliculatus_M_contigs944.1.1 ID=mRNA_H-canaliculatus_M_contigs944.1.1|Name=mRNA_H-canaliculatus_M_contigs944.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=738bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs944:2622..5997+ (Hapterophycus canaliculatus Oshoro7m male)
AGCAGCAGCGTCACCGGCACCGGAACCGTTGGCAGCAGCACCGGTGCTGG
CACCAATATGTTTTCCTGCTCCGAATCGGTCAGCAGTCAACCCACTTCGG
CTGTTGCGGCCGAGGTGGCAACAGCGGCGGTAGCTGCCACAGCCACGGGT
TACAACAGCAGGACGTTTTTCAGCGCCGAAGAAGCTTCGCCACGAGGTGG
GGAGCGTGCGACCAGCATGCCAGCAGTGAAAAGCGCGTCCTACGACAGGA
GCGATGATTCCTCGGGTGATCGCGGTCTGTCCTGCCGGAGCTCAAAGTTA
GGCGCAACAGGCATCCCGGCATGTTCTCCCGACACGCCAGACTCCTCCGT
ACTTGCATCTACAAGGGCAGAGGGAGCTGGCGGTAGTGACGACGATGTCA
CTGATACTGATGAGGGTGTCATGGCTAAGCTAAAGGATTTCACCGAGATA
GCCAGGCGCACCGCGGCACACAACGAGGTGATGAGGCTACGCGAGCACGA
GATGGCATGGGCCGCGCGGACCGCAAGCGAGATGTCGCTGCGGTCGGAGA
TGTGCGCCTTGAAGGACGACTTGTCCCGCGTCTCTGGAAACAACGCGGTG
CTCCAGAGGAGGTGCGACGTTCTCCAGCAGGAGAATGCCGAGCTTGGCGA
GAGGTTCGCGGCAATCGCAGAAGAGAAGCGGCAGGTGGAGTCGAAGGCGC
GCCGGCTGCTGCGGAGCGACAGATACCGTGGCTACTGA
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