mRNA_H-canaliculatus_M_contigs9395.3.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9395.3.1
Unique NamemRNA_H-canaliculatus_M_contigs9395.3.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8BHP9_BETVV)

HSP 1 Score: 127 bits (320), Expect = 2.570e-33
Identity = 82/164 (50.00%), Postives = 92/164 (56.10%), Query Frame = 3
Query:  264 YFTPLPGYFSPFPHGTRALSVTYGYLALRDGPRRFTPGFTGPVLLGCLQKRR*HFVYGAITLYGAAF-----LTASTTPALIPFRSPLLWESLLLSVPCGT*MFQFPQFPLPVLCVHTGV-TPHNGCR-VSPFGNPRIKA*SAAPRGLSQPLTSFIGRRCQGIH 734
            YFTPLPG+FSPFPHGT +LSV   YLAL DGP  F   +T P LL         F      L   AF      + + T  L+ FRSPLL ES L+S P  T MFQF +F       HT V +    CR VSPFGN RIKA   APR LSQ  TSF+   CQGIH
Sbjct:    2 YFTPLPGFFSPFPHGTSSLSVNDEYLALEDGPPIFRQDYTCPALLVVSSVPHVSFRIQGYHLLWPAFPDCFAKSRAITNRLLRFRSPLLSESRLMSFPRATEMFQFTRF-----ASHTYVFSMRYLCRWVSPFGNLRIKAYLPAPRSLSQAFTSFVAYHCQGIH 160          
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Match: Uncharacterized (protein n=2 Tax=Magnetospirillum gryphiswaldense TaxID=55518 RepID=Q3BKI1_9PROT)

HSP 1 Score: 121 bits (304), Expect = 7.110e-30
Identity = 73/158 (46.20%), Postives = 92/158 (58.23%), Query Frame = 1
Query:    1 PQVIPPVFSLGGFARPRGLTPASHCPWLDHSASGLQHATKRPIQTRFRSGFPSRVNLATHRNSLAHSSKGTPSPLK-ASTDCRPTVSGTISLPSRGTFHLSLTVLVHYRSPTDT*PYEMVLADSHQVSRA--RCYSGVYRRDANISCTGLLPSTAQLS 465
            PQ+IP  F+  GF  P G+TP S CPW+DHS SGL HAT+RPIQTRFR  +  R+ LA + NSL H +KGTPSP K A T CR +VSGT+SLP  G F    +   H  S        + L D   + R    C   + + D   + TGL P+ A+LS
Sbjct:    7 PQIIPDFFNRRGFGPPVGVTPPSTCPWIDHSVSGLMHATRRPIQTRFRCAYTYRLKLAAYTNSLTHYTKGTPSPFKRAPTACRHSVSGTVSLPLSGCF----SPFPHGTSSLSVTEEYLGLEDGPPMFRQDFTC-PALLKADTRFTPTGLSPAMARLS 159          
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Match: Uncharacterized (protein (Fragment) n=3 Tax=Streptomyces viridosporus (strain ATCC 14672 / DSM 40746 / JCM 4963 / KCTC 9882 / NRRL B-12104 / FH 1290) TaxID=566461 RepID=D5ZS70_STRV1)

HSP 1 Score: 116 bits (291), Expect = 6.480e-29
Identity = 82/172 (47.67%), Postives = 99/172 (57.56%), Query Frame = 1
Query:    1 PQVIPPVFSLGGFARPRGLTPASHCPWLDHSASGLQHATKRPI-QTRFRSGFPSRVNLATHRNSLAHSSKGTPSPLK------ASTDCRPTVSGTISLPSRGTFHLSLTVL--VHYRSPTDT*PYEMVLADSHQVSRARCYSGVYRRDANISCTGLLPSTAQLS*LLPLHQR 489
            PQVIP VF+ GGF  PR LT AS CPWLDHSASGL+ AT+  +    F +  P  +      NS AHSSKGT S  +      A T CR TVSGTISLPSRGTFH SLTVL  + ++       +   +       RA   S   +R A++S TG+LPS   LS +L L QR
Sbjct:    1 PQVIPQVFNPGGFGPPRSLTSASTCPWLDHSASGLERATETALFGLAFATTSPPGLTSQHTANSQAHSSKGTQSRERGKPRSDAPTACRHTVSGTISLPSRGTFHHSLTVLSAIGHQGIFRLGGWSRRIHTGFLGPRATWVS--LQRAADVSATGVLPSAPDLSHVLRLRQR 170          
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Match: Uncharacterized (protein n=1 Tax=Streptomyces lincolnensis TaxID=1915 RepID=A0A1B1MC92_STRLN)

HSP 1 Score: 115 bits (287), Expect = 8.960e-28
Identity = 58/85 (68.24%), Postives = 60/85 (70.59%), Query Frame = 3
Query:  489 LIPFRSPLLWESLLLSVPCGT*MFQFPQFPLPVLCVHTGVTPHNGCRVSPFGNPRIKA*SAAPRGLSQPLTSFIGRRCQGIHRWP 743
            LI FRSPLL ES L S+P GT MF FP FP   LCV   VT H+ CRVSPFGNPRIKA    PRGLS P TSFIG  CQGIHR P
Sbjct:   63 LIRFRSPLLPESRLFSLPAGTEMFHFPAFPPHTLCVQVWVTAHDDCRVSPFGNPRIKAWLTTPRGLSWPPTSFIGSWCQGIHRAP 147          
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Match: Uncharacterized (protein n=1 Tax=Streptomyces lincolnensis TaxID=1915 RepID=A0A1B1MIF6_STRLN)

HSP 1 Score: 115 bits (287), Expect = 9.900e-28
Identity = 58/85 (68.24%), Postives = 60/85 (70.59%), Query Frame = 3
Query:  489 LIPFRSPLLWESLLLSVPCGT*MFQFPQFPLPVLCVHTGVTPHNGCRVSPFGNPRIKA*SAAPRGLSQPLTSFIGRRCQGIHRWP 743
            LI FRSPLL ES L S+P GT MF FP FP   LCV   VT H+ CRVSPFGNPRIKA    PRGLS P TSFIG  CQGIHR P
Sbjct:   63 LIRFRSPLLPESRLFSLPAGTEMFHFPAFPPHTLCVQVWVTAHDDCRVSPFGNPRIKAWLTTPRGLSWPPTSFIGSWCQGIHRAP 147          
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Match: Uncharacterized (protein n=1 Tax=Streptomyces sp. KY75 TaxID=2772433 RepID=A0A7R8NTI2_9ACTN)

HSP 1 Score: 115 bits (287), Expect = 1.840e-27
Identity = 59/85 (69.41%), Postives = 61/85 (71.76%), Query Frame = 3
Query:  489 LIPFRSPLLWESLLLSVPCGT*MFQFPQFPLPVLCVHTGVTPHNGCRVSPFGNPRIKA*SAAPRGLSQPLTSFIGRRCQGIHRWP 743
            LI FRSPLL ES L S+P GT MF FP FP   LCV   VT H+ CRVSPFGNPRIKA   APRGLS P TSFIG  CQGIHR P
Sbjct:   63 LIQFRSPLLPESRLFSLPEGTEMFHFPSFPPHCLCVQQRVTAHDDCRVSPFGNPRIKAWLTAPRGLSWPPTSFIGSWCQGIHRAP 147          
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Match: Uncharacterized (protein n=1 Tax=Collinsella aerofaciens (strain ATCC 25986 / DSM 3979 / JCM 10188 / KCTC 3647 / NCTC 11838 / VPI 1003) TaxID=411903 RepID=A4ECR2_COLAA)

HSP 1 Score: 113 bits (282), Expect = 5.280e-27
Identity = 71/139 (51.08%), Postives = 85/139 (61.15%), Query Frame = 1
Query:    1 PQVIPPVFSLGGFARPRGLTPASHCPWLDHSASGLQHATKRPIQTRFRSGFPSRVNLATHRNSLAHSSKGTPSPLKASTDCRP-TVSGTISLPSRGTFHLSLTVLVHYRSPTDT*PYEMVLADSHQVSRARCYSGVYRR 414
            PQVI  VF+   F  PRGLTPAS CP + H AS  +  T+  +     +  P R+      +SLAHS+KGTPS LK +   R  TVSGT+SLPSRG FHLSLTVLV YRS   T  + +V   S +VSRAR YSG   R
Sbjct:    7 PQVIAAVFNRRAFGPPRGLTPASACPRIAHPASRPRRGTQVALLRLAFAPAPFRLTSPRASDSLAHSTKGTPSQLKVAPTARGRTVSGTVSLPSRGAFHLSLTVLVRYRSQGSTQAWMVVHPGSDRVSRARPYSGTASR 145          
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Match: Uncharacterized (protein n=2 Tax=Streptomyces lincolnensis TaxID=1915 RepID=A0A345GJE8_STRLN)

HSP 1 Score: 115 bits (287), Expect = 9.370e-27
Identity = 58/85 (68.24%), Postives = 60/85 (70.59%), Query Frame = 3
Query:  489 LIPFRSPLLWESLLLSVPCGT*MFQFPQFPLPVLCVHTGVTPHNGCRVSPFGNPRIKA*SAAPRGLSQPLTSFIGRRCQGIHRWP 743
            LI FRSPLL ES L S+P GT MF FP FP   LCV   VT H+ CRVSPFGNPRIKA    PRGLS P TSFIG  CQGIHR P
Sbjct:  169 LIRFRSPLLPESRLFSLPAGTEMFHFPAFPPHTLCVQVWVTAHDDCRVSPFGNPRIKAWLTTPRGLSWPPTSFIGSWCQGIHRAP 253          
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Match: Uncharacterized (protein n=3 Tax=Streptomyces coelicoflavus ZG0656 TaxID=1120227 RepID=H1Q7W9_9ACTN)

HSP 1 Score: 112 bits (280), Expect = 1.630e-26
Identity = 57/85 (67.06%), Postives = 60/85 (70.59%), Query Frame = 3
Query:  489 LIPFRSPLLWESLLLSVPCGT*MFQFPQFPLPVLCVHTGVTPHNGCRVSPFGNPRIKA*SAAPRGLSQPLTSFIGRRCQGIHRWP 743
            LI FRSPLL ES L S+P GT MF FP FP   LCV   VT H+ CRVSPFG+PRIKA    PRGLS P TSFIG  CQGIHR P
Sbjct:  123 LIRFRSPLLPESRLFSLPAGTEMFHFPAFPPHCLCVQQRVTAHDDCRVSPFGHPRIKAWLTTPRGLSWPPTSFIGSWCQGIHRAP 207          
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Match: Uncharacterized (protein n=1 Tax=Streptomyces scabiei TaxID=1930 RepID=A0A100JYY2_STRSC)

HSP 1 Score: 112 bits (281), Expect = 5.000e-26
Identity = 57/85 (67.06%), Postives = 60/85 (70.59%), Query Frame = 3
Query:  489 LIPFRSPLLWESLLLSVPCGT*MFQFPQFPLPVLCVHTGVTPHNGCRVSPFGNPRIKA*SAAPRGLSQPLTSFIGRRCQGIHRWP 743
            LI FRSPLL ES L S+P GT MF FP FP   LCV   VT H+ CRVSPFG+PRIKA    PRGLS P TSFIG  CQGIHR P
Sbjct:  123 LIRFRSPLLPESRLFSLPAGTEMFHFPAFPPLALCVQARVTAHDDCRVSPFGHPRIKAWLTTPRGLSWPPTSFIGSWCQGIHRAP 207          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.570e-3350.00protein (Fragment) n=1 Tax=Beta vulgaris subsp. vu... [more]
Uncharacterized7.110e-3046.20protein n=2 Tax=Magnetospirillum gryphiswaldense T... [more]
Uncharacterized6.480e-2947.67protein (Fragment) n=3 Tax=Streptomyces viridospor... [more]
Uncharacterized8.960e-2868.24protein n=1 Tax=Streptomyces lincolnensis TaxID=19... [more]
Uncharacterized9.900e-2868.24protein n=1 Tax=Streptomyces lincolnensis TaxID=19... [more]
Uncharacterized1.840e-2769.41protein n=1 Tax=Streptomyces sp. KY75 TaxID=277243... [more]
Uncharacterized5.280e-2751.08protein n=1 Tax=Collinsella aerofaciens (strain AT... [more]
Uncharacterized9.370e-2768.24protein n=2 Tax=Streptomyces lincolnensis TaxID=19... [more]
Uncharacterized1.630e-2667.06protein n=3 Tax=Streptomyces coelicoflavus ZG0656 ... [more]
Uncharacterized5.000e-2667.06protein n=1 Tax=Streptomyces scabiei TaxID=1930 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9395contigH-canaliculatus_M_contigs9395:1948..2791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog525255.HMPREF0077_1527
Model size749
Max annot lvl186801|Clostridia
Hectar predicted targeting categorymitochondrion
Exons2
Evalue2.23e-23
EggNOG OGs2DX7X@1|root,32V2Y@2|Bacteria,1VB4V@1239|Firmicutes,25HQ1@186801|Clostridia
DescriptionCOG NOG38524 non supervised orthologous group
Cds size510
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854205.670064-UTR-H-canaliculatus_M_contigs9395:1947..20561696854205.670064-UTR-H-canaliculatus_M_contigs9395:1947..2056Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs9395 1948..2056 +
1696854205.7134848-UTR-H-canaliculatus_M_contigs9395:2661..27911696854205.7134848-UTR-H-canaliculatus_M_contigs9395:2661..2791Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs9395 2662..2791 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854205.6887107-CDS-H-canaliculatus_M_contigs9395:2056..24341696854205.6887107-CDS-H-canaliculatus_M_contigs9395:2056..2434Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9395 2057..2434 +
1696854205.7018187-CDS-H-canaliculatus_M_contigs9395:2529..26611696854205.7018187-CDS-H-canaliculatus_M_contigs9395:2529..2661Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9395 2530..2661 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9395.3.1prot_H-canaliculatus_M_contigs9395.3.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9395 2057..2661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9395.3.1

>prot_H-canaliculatus_M_contigs9395.3.1 ID=prot_H-canaliculatus_M_contigs9395.3.1|Name=mRNA_H-canaliculatus_M_contigs9395.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=170bp
MRLNALFRLAFAPASPHGLTSPHTVTRWLILQKARRRPLRLRLIVDQRFQ
VLFHSPPGVLFTFPSRYSCTIGHLRILSLTRWSSQIHTRFHGPGATRVST
EETLTFRVRGYYPLRRSFPDCFHYTSAHPISLAATLGVVVTFRSLRYLDV
SVPAVPSTRTMCSYRSDTP*
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mRNA from alignment at H-canaliculatus_M_contigs9395:1948..2791+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9395.3.1 ID=mRNA_H-canaliculatus_M_contigs9395.3.1|Name=mRNA_H-canaliculatus_M_contigs9395.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=844bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9395:1948..2791+ (Hapterophycus canaliculatus Oshoro7m male)
CCACAGGTCATCCCCCCAGTTTTCAGCCTAGGTGGGTTCGCGCGTCCACG GGGTCTTACCCCCGCTTCCCACTGCCCATGGCTAGATCACTCGGCTTCGG GTCTACAGCATGCGACTAAACGCCCTATTCAGACTCGCTTTCGCTCCGGC TTCCCCTCACGGGTTAACCTCGCCACACACCGTAACTCGTTGGCTCATTC TTCAAAAGGCACGCCGTCGCCCCTTAAGGCTTCGACTGATTGTAGACCAA CGGTTTCAGGTACTATTTCACTCCCCTCCCGGGGTACTTTTCACCTTTCC CTCACGGTACTCGTGCACTATCGGTCACCTACGGATACTTAGCCTTACGA GATGGTCCTCGCAGATTCACACCAGGTTTCACGGGCCCGGTGCTACTCGG GTGTCTACAGAAGAGACGCTAACATTTCGTGTACGGGGCTATTACCCTCT ACGGCGCAGCTTTCCTGACTGCTTCCACTACACCAGCGTTTTGTAACTCT CCGATAACTCTGACGCATTATCAAGTAGATCCCACAACCCCGAGATGGCA ACGCCGTCAGGCTTTGCACCACCCCGGTTTAGGCTCATCCCATTTCGCTC GCCGCTACTCTGGGAGTCGTTGTTACTTTCCGTTCCTTGCGGTACTTAGA TGTTTCAGTTCCCGCAGTTCCCTCTACCCGTACTATGTGTTCATACAGGA GTGACACCCCATAACGGGTGCCGGGTTTCCCCATTCGGAAATCCTCGGAT CAAGGCCTAGTCGGCGGCTCCCCGAGGCTTATCGCAGCCACTTACGTCCT TCATCGGTCGTAGGTGCCAAGGCATCCACCGTTGGCCCTTTATA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9395:1948..2791+

>mRNA_H-canaliculatus_M_contigs9395.3.1 ID=mRNA_H-canaliculatus_M_contigs9395.3.1|Name=mRNA_H-canaliculatus_M_contigs9395.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=510bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9395:1948..2791+ (Hapterophycus canaliculatus Oshoro7m male)
ATGCGACTAAACGCCCTATTCAGACTCGCTTTCGCTCCGGCTTCCCCTCA
CGGGTTAACCTCGCCACACACCGTAACTCGTTGGCTCATTCTTCAAAAGG
CACGCCGTCGCCCCTTAAGGCTTCGACTGATTGTAGACCAACGGTTTCAG
GTACTATTTCACTCCCCTCCCGGGGTACTTTTCACCTTTCCCTCACGGTA
CTCGTGCACTATCGGTCACCTACGGATACTTAGCCTTACGAGATGGTCCT
CGCAGATTCACACCAGGTTTCACGGGCCCGGTGCTACTCGGGTGTCTACA
GAAGAGACGCTAACATTTCGTGTACGGGGCTATTACCCTCTACGGCGCAG
CTTTCCTGACTGCTTCCACTACACCAGCGCTCATCCCATTTCGCTCGCCG
CTACTCTGGGAGTCGTTGTTACTTTCCGTTCCTTGCGGTACTTAGATGTT
TCAGTTCCCGCAGTTCCCTCTACCCGTACTATGTGTTCATACAGGAGTGA
CACCCCATAA
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