mRNA_H-canaliculatus_M_contigs9395.3.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8BHP9_BETVV) HSP 1 Score: 127 bits (320), Expect = 2.570e-33 Identity = 82/164 (50.00%), Postives = 92/164 (56.10%), Query Frame = 3
Query: 264 YFTPLPGYFSPFPHGTRALSVTYGYLALRDGPRRFTPGFTGPVLLGCLQKRR*HFVYGAITLYGAAF-----LTASTTPALIPFRSPLLWESLLLSVPCGT*MFQFPQFPLPVLCVHTGV-TPHNGCR-VSPFGNPRIKA*SAAPRGLSQPLTSFIGRRCQGIH 734
YFTPLPG+FSPFPHGT +LSV YLAL DGP F +T P LL F L AF + + T L+ FRSPLL ES L+S P T MFQF +F HT V + CR VSPFGN RIKA APR LSQ TSF+ CQGIH
Sbjct: 2 YFTPLPGFFSPFPHGTSSLSVNDEYLALEDGPPIFRQDYTCPALLVVSSVPHVSFRIQGYHLLWPAFPDCFAKSRAITNRLLRFRSPLLSESRLMSFPRATEMFQFTRF-----ASHTYVFSMRYLCRWVSPFGNLRIKAYLPAPRSLSQAFTSFVAYHCQGIH 160
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Match: Uncharacterized (protein n=2 Tax=Magnetospirillum gryphiswaldense TaxID=55518 RepID=Q3BKI1_9PROT) HSP 1 Score: 121 bits (304), Expect = 7.110e-30 Identity = 73/158 (46.20%), Postives = 92/158 (58.23%), Query Frame = 1
Query: 1 PQVIPPVFSLGGFARPRGLTPASHCPWLDHSASGLQHATKRPIQTRFRSGFPSRVNLATHRNSLAHSSKGTPSPLK-ASTDCRPTVSGTISLPSRGTFHLSLTVLVHYRSPTDT*PYEMVLADSHQVSRA--RCYSGVYRRDANISCTGLLPSTAQLS 465
PQ+IP F+ GF P G+TP S CPW+DHS SGL HAT+RPIQTRFR + R+ LA + NSL H +KGTPSP K A T CR +VSGT+SLP G F + H S + L D + R C + + D + TGL P+ A+LS
Sbjct: 7 PQIIPDFFNRRGFGPPVGVTPPSTCPWIDHSVSGLMHATRRPIQTRFRCAYTYRLKLAAYTNSLTHYTKGTPSPFKRAPTACRHSVSGTVSLPLSGCF----SPFPHGTSSLSVTEEYLGLEDGPPMFRQDFTC-PALLKADTRFTPTGLSPAMARLS 159
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Match: Uncharacterized (protein (Fragment) n=3 Tax=Streptomyces viridosporus (strain ATCC 14672 / DSM 40746 / JCM 4963 / KCTC 9882 / NRRL B-12104 / FH 1290) TaxID=566461 RepID=D5ZS70_STRV1) HSP 1 Score: 116 bits (291), Expect = 6.480e-29 Identity = 82/172 (47.67%), Postives = 99/172 (57.56%), Query Frame = 1
Query: 1 PQVIPPVFSLGGFARPRGLTPASHCPWLDHSASGLQHATKRPI-QTRFRSGFPSRVNLATHRNSLAHSSKGTPSPLK------ASTDCRPTVSGTISLPSRGTFHLSLTVL--VHYRSPTDT*PYEMVLADSHQVSRARCYSGVYRRDANISCTGLLPSTAQLS*LLPLHQR 489
PQVIP VF+ GGF PR LT AS CPWLDHSASGL+ AT+ + F + P + NS AHSSKGT S + A T CR TVSGTISLPSRGTFH SLTVL + ++ + + RA S +R A++S TG+LPS LS +L L QR
Sbjct: 1 PQVIPQVFNPGGFGPPRSLTSASTCPWLDHSASGLERATETALFGLAFATTSPPGLTSQHTANSQAHSSKGTQSRERGKPRSDAPTACRHTVSGTISLPSRGTFHHSLTVLSAIGHQGIFRLGGWSRRIHTGFLGPRATWVS--LQRAADVSATGVLPSAPDLSHVLRLRQR 170
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Match: Uncharacterized (protein n=1 Tax=Streptomyces lincolnensis TaxID=1915 RepID=A0A1B1MC92_STRLN) HSP 1 Score: 115 bits (287), Expect = 8.960e-28 Identity = 58/85 (68.24%), Postives = 60/85 (70.59%), Query Frame = 3
Query: 489 LIPFRSPLLWESLLLSVPCGT*MFQFPQFPLPVLCVHTGVTPHNGCRVSPFGNPRIKA*SAAPRGLSQPLTSFIGRRCQGIHRWP 743
LI FRSPLL ES L S+P GT MF FP FP LCV VT H+ CRVSPFGNPRIKA PRGLS P TSFIG CQGIHR P
Sbjct: 63 LIRFRSPLLPESRLFSLPAGTEMFHFPAFPPHTLCVQVWVTAHDDCRVSPFGNPRIKAWLTTPRGLSWPPTSFIGSWCQGIHRAP 147
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Match: Uncharacterized (protein n=1 Tax=Streptomyces lincolnensis TaxID=1915 RepID=A0A1B1MIF6_STRLN) HSP 1 Score: 115 bits (287), Expect = 9.900e-28 Identity = 58/85 (68.24%), Postives = 60/85 (70.59%), Query Frame = 3
Query: 489 LIPFRSPLLWESLLLSVPCGT*MFQFPQFPLPVLCVHTGVTPHNGCRVSPFGNPRIKA*SAAPRGLSQPLTSFIGRRCQGIHRWP 743
LI FRSPLL ES L S+P GT MF FP FP LCV VT H+ CRVSPFGNPRIKA PRGLS P TSFIG CQGIHR P
Sbjct: 63 LIRFRSPLLPESRLFSLPAGTEMFHFPAFPPHTLCVQVWVTAHDDCRVSPFGNPRIKAWLTTPRGLSWPPTSFIGSWCQGIHRAP 147
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Match: Uncharacterized (protein n=1 Tax=Streptomyces sp. KY75 TaxID=2772433 RepID=A0A7R8NTI2_9ACTN) HSP 1 Score: 115 bits (287), Expect = 1.840e-27 Identity = 59/85 (69.41%), Postives = 61/85 (71.76%), Query Frame = 3
Query: 489 LIPFRSPLLWESLLLSVPCGT*MFQFPQFPLPVLCVHTGVTPHNGCRVSPFGNPRIKA*SAAPRGLSQPLTSFIGRRCQGIHRWP 743
LI FRSPLL ES L S+P GT MF FP FP LCV VT H+ CRVSPFGNPRIKA APRGLS P TSFIG CQGIHR P
Sbjct: 63 LIQFRSPLLPESRLFSLPEGTEMFHFPSFPPHCLCVQQRVTAHDDCRVSPFGNPRIKAWLTAPRGLSWPPTSFIGSWCQGIHRAP 147
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Match: Uncharacterized (protein n=1 Tax=Collinsella aerofaciens (strain ATCC 25986 / DSM 3979 / JCM 10188 / KCTC 3647 / NCTC 11838 / VPI 1003) TaxID=411903 RepID=A4ECR2_COLAA) HSP 1 Score: 113 bits (282), Expect = 5.280e-27 Identity = 71/139 (51.08%), Postives = 85/139 (61.15%), Query Frame = 1
Query: 1 PQVIPPVFSLGGFARPRGLTPASHCPWLDHSASGLQHATKRPIQTRFRSGFPSRVNLATHRNSLAHSSKGTPSPLKASTDCRP-TVSGTISLPSRGTFHLSLTVLVHYRSPTDT*PYEMVLADSHQVSRARCYSGVYRR 414
PQVI VF+ F PRGLTPAS CP + H AS + T+ + + P R+ +SLAHS+KGTPS LK + R TVSGT+SLPSRG FHLSLTVLV YRS T + +V S +VSRAR YSG R
Sbjct: 7 PQVIAAVFNRRAFGPPRGLTPASACPRIAHPASRPRRGTQVALLRLAFAPAPFRLTSPRASDSLAHSTKGTPSQLKVAPTARGRTVSGTVSLPSRGAFHLSLTVLVRYRSQGSTQAWMVVHPGSDRVSRARPYSGTASR 145
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Match: Uncharacterized (protein n=2 Tax=Streptomyces lincolnensis TaxID=1915 RepID=A0A345GJE8_STRLN) HSP 1 Score: 115 bits (287), Expect = 9.370e-27 Identity = 58/85 (68.24%), Postives = 60/85 (70.59%), Query Frame = 3
Query: 489 LIPFRSPLLWESLLLSVPCGT*MFQFPQFPLPVLCVHTGVTPHNGCRVSPFGNPRIKA*SAAPRGLSQPLTSFIGRRCQGIHRWP 743
LI FRSPLL ES L S+P GT MF FP FP LCV VT H+ CRVSPFGNPRIKA PRGLS P TSFIG CQGIHR P
Sbjct: 169 LIRFRSPLLPESRLFSLPAGTEMFHFPAFPPHTLCVQVWVTAHDDCRVSPFGNPRIKAWLTTPRGLSWPPTSFIGSWCQGIHRAP 253
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Match: Uncharacterized (protein n=3 Tax=Streptomyces coelicoflavus ZG0656 TaxID=1120227 RepID=H1Q7W9_9ACTN) HSP 1 Score: 112 bits (280), Expect = 1.630e-26 Identity = 57/85 (67.06%), Postives = 60/85 (70.59%), Query Frame = 3
Query: 489 LIPFRSPLLWESLLLSVPCGT*MFQFPQFPLPVLCVHTGVTPHNGCRVSPFGNPRIKA*SAAPRGLSQPLTSFIGRRCQGIHRWP 743
LI FRSPLL ES L S+P GT MF FP FP LCV VT H+ CRVSPFG+PRIKA PRGLS P TSFIG CQGIHR P
Sbjct: 123 LIRFRSPLLPESRLFSLPAGTEMFHFPAFPPHCLCVQQRVTAHDDCRVSPFGHPRIKAWLTTPRGLSWPPTSFIGSWCQGIHRAP 207
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Match: Uncharacterized (protein n=1 Tax=Streptomyces scabiei TaxID=1930 RepID=A0A100JYY2_STRSC) HSP 1 Score: 112 bits (281), Expect = 5.000e-26 Identity = 57/85 (67.06%), Postives = 60/85 (70.59%), Query Frame = 3
Query: 489 LIPFRSPLLWESLLLSVPCGT*MFQFPQFPLPVLCVHTGVTPHNGCRVSPFGNPRIKA*SAAPRGLSQPLTSFIGRRCQGIHRWP 743
LI FRSPLL ES L S+P GT MF FP FP LCV VT H+ CRVSPFG+PRIKA PRGLS P TSFIG CQGIHR P
Sbjct: 123 LIRFRSPLLPESRLFSLPAGTEMFHFPAFPPLALCVQARVTAHDDCRVSPFGHPRIKAWLTTPRGLSWPPTSFIGSWCQGIHRAP 207 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9395.3.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs9395.3.1 >prot_H-canaliculatus_M_contigs9395.3.1 ID=prot_H-canaliculatus_M_contigs9395.3.1|Name=mRNA_H-canaliculatus_M_contigs9395.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=170bp MRLNALFRLAFAPASPHGLTSPHTVTRWLILQKARRRPLRLRLIVDQRFQback to top mRNA from alignment at H-canaliculatus_M_contigs9395:1948..2791+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs9395.3.1 ID=mRNA_H-canaliculatus_M_contigs9395.3.1|Name=mRNA_H-canaliculatus_M_contigs9395.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=844bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9395:1948..2791+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9395:1948..2791+ >mRNA_H-canaliculatus_M_contigs9395.3.1 ID=mRNA_H-canaliculatus_M_contigs9395.3.1|Name=mRNA_H-canaliculatus_M_contigs9395.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=510bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9395:1948..2791+ (Hapterophycus canaliculatus Oshoro7m male)back to top |