mRNA_H-canaliculatus_M_contigs9373.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9373.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9373.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9373.1.1 vs.
Match: TPR (repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G180_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.860e-8
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 SQGKYKEAITLHQEALAIDEKVYGPEHPTVAIDLNNLAGSLES 129
            +QGKY+EA  LH+ +LAIDE+VYGP+HP VA  L+NLAG LES
Sbjct:  153 AQGKYEEAEPLHRRSLAIDEEVYGPDHPNVATGLSNLAGLLES 195
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BLAST of mRNA_H-canaliculatus_M_contigs9373.1.1 vs.
Match: TPR (repeat protein n=1 Tax=Beggiatoa sp. PS TaxID=422289 RepID=A7C642_9GAMM)

HSP 1 Score: 57.4 bits (137), Expect = 6.860e-7
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 SQGKYKEAITLHQEALAIDEKVYGPEHPTVAIDLNNLA 114
            +QG+Y +A  L++ ALAIDEKVYGP HP VA DLNNLA
Sbjct:    7 TQGEYDQAKPLYERALAIDEKVYGPNHPEVATDLNNLA 44
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BLAST of mRNA_H-canaliculatus_M_contigs9373.1.1 vs.
Match: Kinesin (light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L3_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 9.310e-7
Identity = 29/40 (72.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    4 QGKYKEAITLHQEALAIDEKVYGPEHPTVAIDLNNLAGSL 123
            QGKY+EA TL   +LAIDEKVYGP+HP VAI LNN AG L
Sbjct:  340 QGKYEEAETLCVRSLAIDEKVYGPDHPKVAIGLNNRAGFL 379
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BLAST of mRNA_H-canaliculatus_M_contigs9373.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI51_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 9.340e-7
Identity = 26/42 (61.90%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    4 QGKYKEAITLHQEALAIDEKVYGPEHPTVAIDLNNLAGSLES 129
            QGK+ EA +L++ +L+IDEKVYGP+HP VA DLNN+A  +ES
Sbjct:    6 QGKFHEAESLYKRSLSIDEKVYGPDHPEVAADLNNMAVLMES 47
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BLAST of mRNA_H-canaliculatus_M_contigs9373.1.1 vs.
Match: tetratricopeptide (repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 53.9 bits (128), Expect = 1.660e-6
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 SQGKYKEAITLHQEALAIDEKVYGPEHPTVAIDLNNLAG 117
            SQGKY+EA  L+Q AL I E V GP+HP+VA  LNNLAG
Sbjct:    3 SQGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAG 41
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BLAST of mRNA_H-canaliculatus_M_contigs9373.1.1 vs.
Match: tetratricopeptide (repeat protein n=1 Tax=Frankia sp. CN4 TaxID=1836974 RepID=UPI001EE4A569)

HSP 1 Score: 52.8 bits (125), Expect = 6.850e-6
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    7 GKYKEAITLHQEALAIDEKVYGPEHPTVAIDLNNLAGSLES 129
            G+  EA+ L + ALAIDE VYGP+HP VA  LNNLAG+L +
Sbjct:    5 GRGAEALPLARRALAIDETVYGPDHPEVASRLNNLAGALRT 45
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BLAST of mRNA_H-canaliculatus_M_contigs9373.1.1 vs.
Match: Tetratricopeptide (repeat protein n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A842Y8F5_9EURY)

HSP 1 Score: 56.2 bits (134), Expect = 7.310e-6
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    7 GKYKEAITLHQEALAIDEKVYGPEHPTVAIDLNNLAGSLES 129
             ++ +A  +HQ ALAI E VYGP+HPTVAID++NL G LES
Sbjct:  532 AQFTDAKEMHQRALAIGEAVYGPDHPTVAIDVSNLGGVLES 572
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9373.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K147_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.100e-5
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    4 QGKYKEAITLHQEALAIDEKVYGPEHPTVAIDLNNLAGSLE 126
            QGKY EA TL+++A A +E V GPEHP +A+DLNNLAG  E
Sbjct:  437 QGKYSEAETLYKQAAASNELVLGPEHPRLAMDLNNLAGLFE 477
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9373.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU3_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 1.240e-5
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    7 GKYKEAITLHQEALAIDEKVYGPEHPTVAIDLNNLAGSL 123
            GKY+EA  L+  +LAIDE VYGP+HP VA DLNN AG L
Sbjct:  122 GKYEEAEPLYMFSLAIDENVYGPDHPEVAKDLNNCAGLL 160
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9373.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.500e-5
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    4 QGKYKEAITLHQEALAIDEKVYGPEHPTVAIDLNNLAGSL 123
            QGKY+EA  L+  +LAIDEKVYGP+H  VA DLNN AG L
Sbjct:   87 QGKYEEAEPLYMLSLAIDEKVYGPDHLEVAEDLNNCAGLL 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9373.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
TPR1.860e-867.44repeat-containing protein n=1 Tax=Ectocarpus silic... [more]
TPR6.860e-768.42repeat protein n=1 Tax=Beggiatoa sp. PS TaxID=4222... [more]
Kinesin9.310e-772.50light chain-like protein n=1 Tax=Ectocarpus silicu... [more]
Uncharacterized9.340e-761.90protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
tetratricopeptide1.660e-666.67repeat protein n=1 Tax=Desulfobacter hydrogenophil... [more]
tetratricopeptide6.850e-660.98repeat protein n=1 Tax=Frankia sp. CN4 TaxID=18369... [more]
Tetratricopeptide7.310e-660.98repeat protein n=1 Tax=Methanosarcinales archaeon ... [more]
Uncharacterized1.100e-563.41protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.240e-566.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.500e-567.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9373contigH-canaliculatus_M_contigs9373:523..1883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G180
PFAMsTPR_10,TPR_12
Model size591
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue3.05e-09
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Descriptiondetermination of stomach left/right asymmetry
Cds size591
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854204.516944-CDS-H-canaliculatus_M_contigs9373:522..6031696854204.516944-CDS-H-canaliculatus_M_contigs9373:522..603Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9373 523..603 -
1696854204.5282874-CDS-H-canaliculatus_M_contigs9373:740..8661696854204.5282874-CDS-H-canaliculatus_M_contigs9373:740..866Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9373 741..866 -
1696854204.538528-CDS-H-canaliculatus_M_contigs9373:1140..12661696854204.538528-CDS-H-canaliculatus_M_contigs9373:1140..1266Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9373 1141..1266 -
1696854204.5488026-CDS-H-canaliculatus_M_contigs9373:1517..16431696854204.5488026-CDS-H-canaliculatus_M_contigs9373:1517..1643Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9373 1518..1643 -
1696854204.5590863-CDS-H-canaliculatus_M_contigs9373:1751..18831696854204.5590863-CDS-H-canaliculatus_M_contigs9373:1751..1883Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9373 1752..1883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9373.1.1prot_H-canaliculatus_M_contigs9373.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9373 523..1883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9373.1.1

>prot_H-canaliculatus_M_contigs9373.1.1 ID=prot_H-canaliculatus_M_contigs9373.1.1|Name=mRNA_H-canaliculatus_M_contigs9373.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=197bp
SQGKYKEAITLHQEALAIDEKVYGPEHPTVAIDLNNLAGSLESQGNYDEA
KPLYARAVAIGEKSLGPEHPDLAVWLNNQAGLLYALGEYAGAGQLFERSQ
AIREKVLGAEHPLVANVLNNRAALLEEQGKYVEADPLYLRAIEIWEAAFG
PDHLSVGRSLSNRAGLLKAQGKYEDADVLYRRAIQIGEKTLGPDHPN
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mRNA from alignment at H-canaliculatus_M_contigs9373:523..1883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9373.1.1 ID=mRNA_H-canaliculatus_M_contigs9373.1.1|Name=mRNA_H-canaliculatus_M_contigs9373.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1361bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9373:523..1883- (Hapterophycus canaliculatus Oshoro7m male)
TCACAGGGCAAATACAAGGAGGCTATCACGCTACACCAAGAAGCGTTGGC
GATCGACGAGAAGGTATACGGCCCTGAGCACCCAACGGTAGCCATTGACC
TCAACAATTTGGCGGGGTCGTTAGAGAGTCAGGTGAGAAACGATTTTCCC
GGGAGTTTCGGGTGGCTGTTGTTGAAACTCAAAGAATTGCCGTTGTTACT
ATAATTCCATGGACTTATTAGAGATCAAACGTTCTCACAGGGGAATTACG
ACGAGGCCAAGCCGCTGTACGCCAGGGCAGTCGCCATCGGAGAGAAGTCC
CTTGGCCCGGAGCACCCAGATCTTGCCGTATGGCTCAACAATCAGGCTGG
GTTGTTGTACGCATTGGTGAGAGTCGGAGGACATTTCTGTGTGGAAGACG
GGGTTCGAGTCGTCCTGTCTCAATTTCATTCGTCGATAAGTAGAAGGTTC
TCGTGGAAGACCTATTTTGACATGACCAACAACCTGGCGCGGGGAGAAGC
AGGTGACACTTTCCCCAGACATGTCACGTGACCGAAGATTGCTCGAAATA
AACCTGGTCTGTGTCGTTGAGCGGTCGTCGCTGTATCCACTTACACCAAC
TTTATTTTGTTACACAGGGCGAGTATGCTGGGGCCGGACAGCTCTTTGAG
CGCTCTCAGGCGATACGAGAAAAGGTGCTGGGTGCCGAGCACCCCCTTGT
GGCGAATGTGCTCAACAATCGGGCGGCATTGTTGGAGGAGCAGGTGAGAA
TGTAATTTGCAGGGACTAAATTGTAGAGGTATTTTCAAGGTCAACAATAC
TCCGTACCTCTGACTCCATCACGAAGCGAAAAACCCTTCATCCTCCATTG
CATATATATTGCAGTTGTTTGGCGACAACGAAAGCAGCGGACCACTTGAG
TGCGACAGAACAAGCTTTGCTGCCGATACGTGTACCTTAATCTGAATCTC
ACGTACCCAATTAGCTCTACATTGTTAAGAAATCCACTGACACTTCAAGC
TCCCATTTTTTGCGCAGGGAAAATACGTGGAGGCCGACCCCCTTTATCTA
CGAGCCATCGAGATTTGGGAGGCAGCCTTCGGCCCTGACCATCTATCCGT
GGGGAGAAGCCTCAGCAACCGGGCGGGATTGTTGAAAGCTCAGGTGGGAG
ATGCTTTGCGTTTGCAGGGAAATTATGGCTCGGGGCAATTTCTCGGCGCT
TGGCTGTTGACGTCGACGTTACAATGCATGACGTGATCGATTACGCGACG
GTCACCCGCCACCGACCTTTTTCGACTCAGGGCAAGTATGAGGACGCCGA
CGTACTCTATAGGCGAGCTATCCAGATTGGGGAGAAGACCCTCGGCCCTG
ACCATCCAAAT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9373:523..1883-

>mRNA_H-canaliculatus_M_contigs9373.1.1 ID=mRNA_H-canaliculatus_M_contigs9373.1.1|Name=mRNA_H-canaliculatus_M_contigs9373.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=591bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9373:523..1883- (Hapterophycus canaliculatus Oshoro7m male)
TCACAGGGCAAATACAAGGAGGCTATCACGCTACACCAAGAAGCGTTGGC
GATCGACGAGAAGGTATACGGCCCTGAGCACCCAACGGTAGCCATTGACC
TCAACAATTTGGCGGGGTCGTTAGAGAGTCAGGGGAATTACGACGAGGCC
AAGCCGCTGTACGCCAGGGCAGTCGCCATCGGAGAGAAGTCCCTTGGCCC
GGAGCACCCAGATCTTGCCGTATGGCTCAACAATCAGGCTGGGTTGTTGT
ACGCATTGGGCGAGTATGCTGGGGCCGGACAGCTCTTTGAGCGCTCTCAG
GCGATACGAGAAAAGGTGCTGGGTGCCGAGCACCCCCTTGTGGCGAATGT
GCTCAACAATCGGGCGGCATTGTTGGAGGAGCAGGGAAAATACGTGGAGG
CCGACCCCCTTTATCTACGAGCCATCGAGATTTGGGAGGCAGCCTTCGGC
CCTGACCATCTATCCGTGGGGAGAAGCCTCAGCAACCGGGCGGGATTGTT
GAAAGCTCAGGGCAAGTATGAGGACGCCGACGTACTCTATAGGCGAGCTA
TCCAGATTGGGGAGAAGACCCTCGGCCCTGACCATCCAAAT
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