mRNA_H-canaliculatus_M_contigs9351.6.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9351.6.1
Unique NamemRNA_H-canaliculatus_M_contigs9351.6.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Match: LHCP (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI8_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.990e-29
Identity = 60/74 (81.08%), Postives = 64/74 (86.49%), Query Frame = 1
Query:   55 MIASQMFLGTAATLVASSAAFVSPMAVRSVAPAVFPSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPG 276
            M+ASQMF+GTAATL+ASS AFV PMA+RSVA     S  KMSAGSDYVATLPGAPFSDGKIFDPLGLSDGA PG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVGPMAMRSVASTPSSSGFKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPG 74          
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Match: Light (harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 4.150e-29
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 1
Query:   55 MIASQMFLGTAATLVASSAAFVSPMAVRSVAPAVFPSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPG 276
            M+ASQMFLGTAA L+ASS AFV+P+AVRS APA   S+LKMSAGSDYVATLPGAPFSDGKIFDPL LSDGA PG
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPG 74          
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Match: LHCP (protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.050e-28
Identity = 60/74 (81.08%), Postives = 64/74 (86.49%), Query Frame = 1
Query:   55 MIASQMFLGTAATLVASSAAFVSPMAVRSVAPAVFPSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPG 276
            M+ASQMF+GTAATL+ASS AFV+PMAVRSV        LKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGA PG
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPG 74          
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Match: Light (harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 4.240e-28
Identity = 58/73 (79.45%), Postives = 66/73 (90.41%), Query Frame = 1
Query:   55 MIASQMFLGTAATLVASSAAFVSPMAVRSVAPAVFPSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEP 273
            M+A+Q+FLG+AATL+ASS AFV+PMAVRS APA   S+LKMSAGSDYVATLPGAPF DGKIFDPL LSDGA+P
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADP 73          
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 4.340e-28
Identity = 60/71 (84.51%), Postives = 63/71 (88.73%), Query Frame = 1
Query:   64 SQMFLGTAATLVASSAAFVSPMAVRSVAPAVFPSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPG 276
            S MFLGTAATL+ASS AFV+PMAVRS APA   S+LKMSAGSDYVATLPGAPF DGKIFDPL LSDGAEPG
Sbjct:    5 SNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPG 75          
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.230e-20
Identity = 53/71 (74.65%), Postives = 61/71 (85.92%), Query Frame = 1
Query:   64 SQMFLGTAATLVASSAAFVSPMAVRSVAPAVFPSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPG 276
            S MFLGTAATL+ASSAAFV+PMAVRS APA   S+LKMSAG+DY+ATLPGA   +GKIFD L L+DGA+PG
Sbjct:    5 SNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPG 72          
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S4_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.420e-19
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 1
Query:   55 MIASQMFLGTAATLVASSAAFVSPMAVRSVAPAVFPSSLKMSAGSDYVATLPGAPFSDGK 234
            M+ASQMF+G AATL+ASS AFV+PMAV SVA     +SLKMSAGSDYVATLPGAPFSDGK
Sbjct:    1 MVASQMFIGAAATLIASSTAFVAPMAVPSVATTTSSASLKMSAGSDYVATLPGAPFSDGK 60          
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ2_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.280e-17
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 1
Query:   55 MIASQMFLGTAATLVASSAAFVSPMAVRSVAPAV-FPSSLKMSAGSDYVATLPGAPFSDGK 234
            M+ASQMF+GTAATL+ASS AFV+PMAVRSVA      SSL MSAGSDYVATLPGAPFSDGK
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGK 61          
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J914_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.030e-17
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 1
Query:   70 MFLGTAATLVASSAAFVSPMAVRSVA-PAVFPSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAE 270
            MF+GTAATL+ASS AFV+PMAVRSVA  A   SS+ MSAGSDYVATLPGAPFSDGK F     ++GA+
Sbjct:    1 MFIGTAATLIASSTAFVAPMAVRSVAITAPSSSSVMMSAGSDYVATLPGAPFSDGKGFRCFLSAEGAK 68          
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Match: LHCP (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.150e-16
Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 1
Query:   55 MIASQMFLGTAATLVASSAAFVSPMAVRSVAPAV-FPSSLKMSAGSDYVATLPGAPFSDGKIFDPLGL 255
            M+ASQMF+GTAATL+ASS AFV+P+AVRSVA      SSL MSAGSDYVATLPGAPFSDGK   P  L
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRL 68          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
LHCP2.990e-2981.08protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Light4.150e-2982.43harvesting complex protein n=2 Tax=Ectocarpus TaxI... [more]
LHCP1.050e-2881.08protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Light4.240e-2879.45harvesting complex protein n=2 Tax=Ectocarpus TaxI... [more]
Light4.340e-2884.51harvesting complex protein n=1 Tax=Ectocarpus sili... [more]
Light1.230e-2074.65harvesting complex protein n=1 Tax=Ectocarpus sili... [more]
Uncharacterized1.420e-1978.33protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.280e-1780.33protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.030e-1770.59protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
LHCP3.150e-1673.53protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9351contigH-canaliculatus_M_contigs9351:4048..4752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G7S3
PFAMsChloroa_b-bind
Model size278
Max annot lvl2759|Eukaryota
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categorychloroplast
Exons2
Evalue6.04e-33
EggNOG OGs2BEWM@1|root,2S15M@2759|Eukaryota
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_000590.1
DescriptionChlorophyll A-B binding protein
Cds size276
COG categoryU
BRITEko00000,ko00001,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854203.0111415-CDS-H-canaliculatus_M_contigs9351:4047..42811696854203.0111415-CDS-H-canaliculatus_M_contigs9351:4047..4281Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9351 4048..4281 +
1696854203.024258-CDS-H-canaliculatus_M_contigs9351:4709..47511696854203.024258-CDS-H-canaliculatus_M_contigs9351:4709..4751Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9351 4710..4751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9351.6.1prot_H-canaliculatus_M_contigs9351.6.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9351 4048..4751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9351.6.1

>prot_H-canaliculatus_M_contigs9351.6.1 ID=prot_H-canaliculatus_M_contigs9351.6.1|Name=mRNA_H-canaliculatus_M_contigs9351.6.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=92bp
RIIPLPFSCVFSHAASSKMIASQMFLGTAATLVASSAAFVSPMAVRSVAP
AVFPSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPG
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mRNA from alignment at H-canaliculatus_M_contigs9351:4048..4752+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9351.6.1 ID=mRNA_H-canaliculatus_M_contigs9351.6.1|Name=mRNA_H-canaliculatus_M_contigs9351.6.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=705bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9351:4048..4752+ (Hapterophycus canaliculatus Oshoro7m male)
CGAATCATCCCCCTCCCGTTCTCCTGCGTATTCTCGCACGCCGCCTCAAG CAAGATGATCGCCTCCCAGATGTTCCTCGGCACCGCTGCCACTCTCGTCG CCTCCTCGGCTGCGTTCGTCTCACCGATGGCCGTGCGATCCGTCGCGCCC GCCGTGTTCCCCTCGAGCCTCAAGATGAGCGCTGGATCGGACTACGTTGC AACGCTCCCTGGCGCTCCCTTCAGCGACGGTAAAGTGAGCCCCGGGACGG ACAAGCATTTTCAGAGCGGGCAAGGGCCTGGCAGATTCTTTGCCCCACAA CTAATCTCTCCGTTGACAGCAGTAGATATTTGTAATGTTGAGAACATCTC TGATGTCCCCAAAATGTTCTCCCCAACCCTGTGCGCTTTGTTTGCACGCA TTTACATCCACGTCCTTTGCTGACATCGACACGTCATGGCTTACTTACAT GGCGTGCGCGTAGGTAAACACCTGTAAGTTCTACATTGACTCCAAGTCCA GCCCCTGGCGGCCTTGGCACGTTGGCTCTCCGCTTGAGGGGAGTCTGGTT ATACTGCGTTTGCGGCTGGGGTATCGATGCGTGCTTGCTCCGCGAAACGG ACGATGTGTCCACGCCTGCCTATCTGGCTGCTGCTTTCTCGTTGTGACCG CCGCTACTTCAGATCTTTGACCCCCTCGGCTTGTCCGACGGCGCTGAACC CGGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9351:4048..4752+

>mRNA_H-canaliculatus_M_contigs9351.6.1 ID=mRNA_H-canaliculatus_M_contigs9351.6.1|Name=mRNA_H-canaliculatus_M_contigs9351.6.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=276bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9351:4048..4752+ (Hapterophycus canaliculatus Oshoro7m male)
CGAATCATCCCCCTCCCGTTCTCCTGCGTATTCTCGCACGCCGCCTCAAG
CAAGATGATCGCCTCCCAGATGTTCCTCGGCACCGCTGCCACTCTCGTCG
CCTCCTCGGCTGCGTTCGTCTCACCGATGGCCGTGCGATCCGTCGCGCCC
GCCGTGTTCCCCTCGAGCCTCAAGATGAGCGCTGGATCGGACTACGTTGC
AACGCTCCCTGGCGCTCCCTTCAGCGACGGTAAAATCTTTGACCCCCTCG
GCTTGTCCGACGGCGCTGAACCCGGG
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