mRNA_H-canaliculatus_M_contigs9351.6.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Match: LHCP (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI8_9PHAE) HSP 1 Score: 111 bits (277), Expect = 2.990e-29 Identity = 60/74 (81.08%), Postives = 64/74 (86.49%), Query Frame = 1
Query: 55 MIASQMFLGTAATLVASSAAFVSPMAVRSVAPAVFPSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPG 276
M+ASQMF+GTAATL+ASS AFV PMA+RSVA S KMSAGSDYVATLPGAPFSDGKIFDPLGLSDGA PG
Sbjct: 1 MVASQMFIGTAATLIASSTAFVGPMAMRSVASTPSSSGFKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPG 74
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Match: Light (harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI) HSP 1 Score: 112 bits (281), Expect = 4.150e-29 Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 1
Query: 55 MIASQMFLGTAATLVASSAAFVSPMAVRSVAPAVFPSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPG 276
M+ASQMFLGTAA L+ASS AFV+P+AVRS APA S+LKMSAGSDYVATLPGAPFSDGKIFDPL LSDGA PG
Sbjct: 1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPG 74
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Match: LHCP (protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.050e-28 Identity = 60/74 (81.08%), Postives = 64/74 (86.49%), Query Frame = 1
Query: 55 MIASQMFLGTAATLVASSAAFVSPMAVRSVAPAVFPSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPG 276
M+ASQMF+GTAATL+ASS AFV+PMAVRSV LKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGA PG
Sbjct: 1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPG 74
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Match: Light (harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI) HSP 1 Score: 110 bits (274), Expect = 4.240e-28 Identity = 58/73 (79.45%), Postives = 66/73 (90.41%), Query Frame = 1
Query: 55 MIASQMFLGTAATLVASSAAFVSPMAVRSVAPAVFPSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEP 273
M+A+Q+FLG+AATL+ASS AFV+PMAVRS APA S+LKMSAGSDYVATLPGAPF DGKIFDPL LSDGA+P
Sbjct: 1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADP 73
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI) HSP 1 Score: 110 bits (274), Expect = 4.340e-28 Identity = 60/71 (84.51%), Postives = 63/71 (88.73%), Query Frame = 1
Query: 64 SQMFLGTAATLVASSAAFVSPMAVRSVAPAVFPSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPG 276
S MFLGTAATL+ASS AFV+PMAVRS APA S+LKMSAGSDYVATLPGAPF DGKIFDPL LSDGAEPG
Sbjct: 5 SNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPG 75
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 1.230e-20 Identity = 53/71 (74.65%), Postives = 61/71 (85.92%), Query Frame = 1
Query: 64 SQMFLGTAATLVASSAAFVSPMAVRSVAPAVFPSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAEPG 276
S MFLGTAATL+ASSAAFV+PMAVRS APA S+LKMSAG+DY+ATLPGA +GKIFD L L+DGA+PG
Sbjct: 5 SNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPG 72
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S4_ECTSI) HSP 1 Score: 84.7 bits (208), Expect = 1.420e-19 Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 1
Query: 55 MIASQMFLGTAATLVASSAAFVSPMAVRSVAPAVFPSSLKMSAGSDYVATLPGAPFSDGK 234
M+ASQMF+G AATL+ASS AFV+PMAV SVA +SLKMSAGSDYVATLPGAPFSDGK
Sbjct: 1 MVASQMFIGAAATLIASSTAFVAPMAVPSVATTTSSASLKMSAGSDYVATLPGAPFSDGK 60
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWJ2_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 1.280e-17 Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 1
Query: 55 MIASQMFLGTAATLVASSAAFVSPMAVRSVAPAV-FPSSLKMSAGSDYVATLPGAPFSDGK 234
M+ASQMF+GTAATL+ASS AFV+PMAVRSVA SSL MSAGSDYVATLPGAPFSDGK
Sbjct: 1 MVASQMFIGTAATLIASSTAFVAPMAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGK 61
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J914_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 3.030e-17 Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 1
Query: 70 MFLGTAATLVASSAAFVSPMAVRSVA-PAVFPSSLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAE 270
MF+GTAATL+ASS AFV+PMAVRSVA A SS+ MSAGSDYVATLPGAPFSDGK F ++GA+
Sbjct: 1 MFIGTAATLIASSTAFVAPMAVRSVAITAPSSSSVMMSAGSDYVATLPGAPFSDGKGFRCFLSAEGAK 68
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Match: LHCP (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 3.150e-16 Identity = 50/68 (73.53%), Postives = 55/68 (80.88%), Query Frame = 1
Query: 55 MIASQMFLGTAATLVASSAAFVSPMAVRSVAPAV-FPSSLKMSAGSDYVATLPGAPFSDGKIFDPLGL 255
M+ASQMF+GTAATL+ASS AFV+P+AVRSVA SSL MSAGSDYVATLPGAPFSDGK P L
Sbjct: 1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRL 68 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9351.6.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs9351.6.1 >prot_H-canaliculatus_M_contigs9351.6.1 ID=prot_H-canaliculatus_M_contigs9351.6.1|Name=mRNA_H-canaliculatus_M_contigs9351.6.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=92bp RIIPLPFSCVFSHAASSKMIASQMFLGTAATLVASSAAFVSPMAVRSVAPback to top mRNA from alignment at H-canaliculatus_M_contigs9351:4048..4752+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs9351.6.1 ID=mRNA_H-canaliculatus_M_contigs9351.6.1|Name=mRNA_H-canaliculatus_M_contigs9351.6.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=705bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9351:4048..4752+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9351:4048..4752+ >mRNA_H-canaliculatus_M_contigs9351.6.1 ID=mRNA_H-canaliculatus_M_contigs9351.6.1|Name=mRNA_H-canaliculatus_M_contigs9351.6.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=276bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9351:4048..4752+ (Hapterophycus canaliculatus Oshoro7m male)back to top |