mRNA_H-canaliculatus_M_contigs9333.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9333.1.1 vs.
Match: HSP70 (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JC70_9PHAE) HSP 1 Score: 368 bits (945), Expect = 3.420e-116 Identity = 186/216 (86.11%), Postives = 203/216 (93.98%), Query Frame = 1
Query: 1 VRETLSRYLSMGVDQPLSLGAHLNGDESPCLGAAFRGANLSRAFDVRKVGMTDVTPWAVDLSFADL-ESTGFKGVLGGLFGGGKKEGDNSAPTLKAAGAVFKQAPLYGENTPLPLKKTLSITRSEDFEVNVTYAAPAEGARTQLPDGTQSMIGSYQVTGVANFAKQMEEEGRGAPKVSLRFTSGIAGVPELASAEAFVEFEKNVTYTENEVVEEDE 645
VRETLSRYLS+GVDQPL+LGAHLNGDESPCLGAAFRGAN SRAFDVRKVGMTD+TPWAVDLSFADL ES GFKGVLGGLFGGGKK+G ++APTLK AG VFK+ PLYGENTPLPLKKTLSITRSE+FEVNVTYA PA+G TQLP+GTQ MI SYQVTGVA+FAK+MEEEGRGAPKV+LRFTSGIAGVPELASAEAFVEFEKNVTYTE+ VV+++E
Sbjct: 383 VRETLSRYLSIGVDQPLALGAHLNGDESPCLGAAFRGANQSRAFDVRKVGMTDITPWAVDLSFADLDESKGFKGVLGGLFGGGKKDGKDAAPTLKTAGEVFKEVPLYGENTPLPLKKTLSITRSENFEVNVTYATPADGGNTQLPEGTQEMIASYQVTGVADFAKKMEEEGRGAPKVALRFTSGIAGVPELASAEAFVEFEKNVTYTEDVVVDDEE 598
BLAST of mRNA_H-canaliculatus_M_contigs9333.1.1 vs.
Match: HSP70 (n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A2R4K3C3_SACJA) HSP 1 Score: 341 bits (874), Expect = 5.540e-106 Identity = 176/214 (82.24%), Postives = 190/214 (88.79%), Query Frame = 1
Query: 1 VRETLSRYLSMGVDQPLSLGAHLNGDESPCLGAAFRGANLSRAFDVRKVGMTDVTPWAVDLSFADLESTGFKGVLGGLFGGGKKEGDNSAPTLKAAGAVFKQAPLYGENTPLPLKKTLSITRSEDFEVNVTYAAPAEGARTQLPDGTQSMIGSYQVTGVANFAKQMEEEGRGAPKVSLRFTSGIAGVPELASAEAFVEFEKNVTYTENEVVEED 642
VR+ LSRYLSMGVDQPLSLGAHLNGDESPCLGAAFRGANLSRAFDVRKVGMTD+TPWAVDLSFADL+STGFKGVLGGLFGGGK G ++ L AG VFKQ PLYG N PLPLKKTLSITRS DFEVNVTYA AEG QLP+GTQSMIGSYQVTGV FAK+MEEEG GAPKV+LRFTSG+ GVPEL SAEA+VEFEKNVTYTE++VVE++
Sbjct: 381 VRDALSRYLSMGVDQPLSLGAHLNGDESPCLGAAFRGANLSRAFDVRKVGMTDITPWAVDLSFADLDSTGFKGVLGGLFGGGK--GVDAVAALAPAGEVFKQVPLYGANAPLPLKKTLSITRSTDFEVNVTYAGAAEG-NIQLPEGTQSMIGSYQVTGVVAFAKKMEEEGFGAPKVALRFTSGVGGVPELGSAEAYVEFEKNVTYTEDQVVEDE 591
BLAST of mRNA_H-canaliculatus_M_contigs9333.1.1 vs.
Match: Heat (shock protein 70 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWZ3_9STRA) HSP 1 Score: 150 bits (380), Expect = 1.110e-36 Identity = 96/215 (44.65%), Postives = 120/215 (55.81%), Query Frame = 1
Query: 1 VRETLSRYLSMGVDQPLSLGAHLNGDESPCLGAAFRGANLSRAFDVRKVGMTDVTPWAVDLSFADLESTGFKGVLGGLFG-------GGKKEGDNSAPTLKAAGAVFKQA-PLYGENTPLPLKKTLSITRSEDFEVNVTYAAPAEGARTQLPDGTQSMIGSYQVTGVANFAKQMEEEGRGAPKVSLRFTSGIAGVPELASAEAFVEFEKNVTYTE 621
V+E LS +L PL L HLNGDE+ LGAAF GAN SRAF VR+VGM+D+TP+AVDL AD G +F G +KEG + A FK++ PLY N P+ +K ++I + D NVTYA A LP GTQ+MI S+ +TGV FA + +G G PKV+LRF GVP L A A V +K VTY E
Sbjct: 377 VQELLSAHL------PLPLSVHLNGDEAFALGAAFAGANASRAFHVRQVGMSDITPFAVDLHLADAPRATAATAGGNVFSNMLHKLDGKEKEGGEDGEGVGEA--EFKRSVPLYAVNAPVSARKAITIKHTRDLRANVTYA----DANPYLPAGTQTMIASFNITGVEKFAAETLADGLGVPKVTLRFAMDATGVPTLVEAFAEVPVQKEVTYEE 579
BLAST of mRNA_H-canaliculatus_M_contigs9333.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMJ4_HETAK) HSP 1 Score: 140 bits (354), Expect = 2.860e-33 Identity = 81/189 (42.86%), Postives = 108/189 (57.14%), Query Frame = 1
Query: 43 QPLSLGAHLNGDESPCLGAAFRGANLSRAFDVRKVGMTDVTPWAVDLSFADLESTGFKGVLGGLFGGGKKEGDNSAPTLKAAGAVFKQAPLYGENTPLPLKKTLSITRSEDFEVNVTYAAPAEGA---RTQLPDGTQSMIGSYQVTGVANFAKQMEEEGRGAPKVSLRFTSGIAGVPELASAEAFVEFE 600
+ + LG HLNGDE+ +GAAFR ANLS AF VR VGMTD++P+AVDL DL + G AA A K + LY N L LKK +S T + D V ++Y AP +G QLP+GT++ I +Y+VTG+ FA ++ E+G GAPKV L F +G+ L+ AEA +E E
Sbjct: 396 EEMELGVHLNGDEAMAVGAAFRAANLSTAFKVRTVGMTDISPFAVDLELTDLSTAG-----------------------DAADAWSKSSLLYDRNAKLDLKKKISFTHAADIRVALSYPAPGQGVDAVNPQLPEGTRAPIANYEVTGIQAFADELAEKGLGAPKVVLHFVQDASGLTVLSRAEATLEEE 561
BLAST of mRNA_H-canaliculatus_M_contigs9333.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0S8_9STRA) HSP 1 Score: 133 bits (335), Expect = 6.260e-31 Identity = 84/192 (43.75%), Postives = 108/192 (56.25%), Query Frame = 1
Query: 49 LSLGAHLNGDESPCLGAAFRGANLSRAFDVRKVGMTDVTPWAVDLSFADLESTGFKGVLGGLFGGGKKEGDNSAPTLKAAG---AVFKQAPLYGENTPLPLKKTLSITRSEDFEVNVTYAAP--AEGART---QLPDGTQSMIGSYQVTGVANFAKQMEEEGRGAPKVSLRFTSGIAGVPELASAEAFVEFE 600
L LG HLN DES LGAAF ANLS AF VRKVGM D+ P+A+DL +DL G GGL + K AG A K++ LY L KK +S T ++D EV + Y P AEG+ + QLP GT+ ++ Y VTGV FAK + ++G G+PKV L F +G+ L+ AEA +E E
Sbjct: 409 LELGIHLNQDESMALGAAFHAANLSTAFRVRKVGMQDINPFAIDLHLSDLPEEGSPSAFGGLLNRLWSSSGDKEEEAKDAGDEEAWTKKSNLYEVGALLDTKKKISFTHAQDVEVQLAYPDPVAAEGSESKNPQLPLGTRPLLAVYNVTGVGPFAKDLADKGLGSPKVVLHFHLQSSGLTVLSKAEAVLEEE 600
BLAST of mRNA_H-canaliculatus_M_contigs9333.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZJ9_9STRA) HSP 1 Score: 133 bits (335), Expect = 9.520e-31 Identity = 84/192 (43.75%), Postives = 108/192 (56.25%), Query Frame = 1
Query: 49 LSLGAHLNGDESPCLGAAFRGANLSRAFDVRKVGMTDVTPWAVDLSFADLESTGFKGVLGGLFGGGKKEGDNSAPTLKAAG---AVFKQAPLYGENTPLPLKKTLSITRSEDFEVNVTYAAP--AEGART---QLPDGTQSMIGSYQVTGVANFAKQMEEEGRGAPKVSLRFTSGIAGVPELASAEAFVEFE 600
L LG HLN DES LGAAF ANLS AF VRKVGM D+ P+A+DL +DL G GGL + K AG A K++ LY L KK +S T ++D EV + Y P AEG+ + QLP GT+ ++ Y VTGV FAK + ++G G+PKV L F +G+ L+ AEA +E E
Sbjct: 409 LELGIHLNQDESMALGAAFHAANLSTAFRVRKVGMQDINPFAIDLHLSDLPEEGSPSAFGGLLNRLWSSSGDKEEEAKDAGDEEAWTKKSNLYEVGALLDTKKKISFTHAQDVEVQLAYPDPVAAEGSESKNPQLPLGTRPLLAVYNVTGVGPFAKDLADKGLGSPKVVLHFHLQSSGLTVLSKAEAVLEEE 600
BLAST of mRNA_H-canaliculatus_M_contigs9333.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S2R8_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.120e-28 Identity = 87/205 (42.44%), Postives = 114/205 (55.61%), Query Frame = 1
Query: 1 VRETLSRYLSMGVDQPLSLGAHLNGDESPCLGAAFRGANLSRAFDVRKVGMTDVTPWAVDLSFADLESTGFKGVL--GGLFGGGKK-----EGDNSAPTLKAAGAVFKQAPLYGENTPLPLKKTLSITRSEDFEVNVTYAAPAEGARTQLPDGTQSMIGSYQVTGVANFAKQMEEEGRGAPKVSLRFTSGIAGVPELASAEAFVE 594
+RE + + L L LG H+N DES LGAAF GAN+S AF VR VGM DV PW + +S DL +L GGLFG GKK E D+ K A VFK +G+ + +KKT++ T D + Y E + LP GT + + Y +TGVA+FAK+ME +G G PKVSL+F +G+ +L AEA VE
Sbjct: 393 IREEIQKVLG----DKLDLGMHINSDESMALGAAFHGANISTAFKVRHVGMADVNPWPIAVSLLDLPI-----ILETGGLFGLGKKTNVEVEEDDEEKWSKQA-TVFKA---FGK---IGVKKTIAFTHDRDVACELDY----ENSEL-LPVGTDTALERYNITGVADFAKEMEAKGLGKPKVSLQFELSSSGITKLVKAEAVVE 576
BLAST of mRNA_H-canaliculatus_M_contigs9333.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8WAU7_9STRA) HSP 1 Score: 125 bits (313), Expect = 4.300e-28 Identity = 89/216 (41.20%), Postives = 120/216 (55.56%), Query Frame = 1
Query: 1 VRETLSRYLSMGVDQPLSLGAHLNGDESPCLGAAFRGANLSRAFDVRKVGMTDVTPWAVDLSFADLESTGFKGVLGGLFGGGKKEGDNSAPTLKAAGAVFKQAPLYGENTPLPLKKTLSITRSEDFEVNVTYAAPAEGARTQLPDGTQSMIGSYQVTGVANFAKQMEEEGRGAPKVSLRFTSGIAGVPELASAEAFVEFEKNVTYTENEVVEEDEE 648
V+E L L G+D LG H+N DES LGAAF GAN+S AF VR VGMTD+ P+ V ++ +L + G LFG GKK+ ++ + + K A ++ EN + +KKT++ T D V Y + LP+GT S I Y +TGVA FAK+M ++G PKVSL+F +G+ L AEA VE TYT VEE+EE
Sbjct: 393 VQEGLKDSLGDGLD----LGMHINSDESMALGAAFHGANVSTAFKVRHVGMTDINPFPVIVNLENLPESSKTG----LFGLGKKKDNDDDDEVWS-----KHATIFKENGKIGVKKTIAFTHDSDVACAVDY----DEESYFLPEGTPSAIERYNITGVAAFAKEMADKGLAKPKVSLQFELSTSGLVHLVKAEASVE----ETYT----VEEEEE 583
BLAST of mRNA_H-canaliculatus_M_contigs9333.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JT97_9STRA) HSP 1 Score: 125 bits (314), Expect = 5.310e-28 Identity = 81/202 (40.10%), Postives = 118/202 (58.42%), Query Frame = 1
Query: 1 VRETLSRYLSMGVDQPLSLGAHLNGDESPCLGAAFRGANLSRAFDVRKVGMTDVTPWAVDLSFADLESTGFKGVLGGLFGGGKKE----GDNSAPTLKAAGAVFKQAPLYGENTPLPLKKTLSITRSEDFEVNVTYAAPAEGARTQLPDGTQSMIGSYQVTGVANFAKQMEEEGRGAPKVSLRFTSGIAGVPELASAEAFVE 594
V+E L YL +D LG H+N DE+ LGAAF GAN+S AF VR+VGMTDV P+A+ +S DL+ GG FG GKK+ ++ K+A VFK +G+ + +KKT++ T D ++ Y LP GT+ + +++TG+A+FAK+M+E+ G+PKVSL+F +G+ EL AEA +E
Sbjct: 392 VQEMLKSYLGESLD----LGMHINSDEAMALGAAFHGANVSTAFRVRQVGMTDVNPFAIGISLHDLDDVETD-ESGGFFGFGKKKKEAKSEDEEEWTKSA-KVFKN---FGK---IGIKKTIAFTHDRDVHCSIDYEDD-----DILPAGTEKSLVRFKITGIADFAKEMKEKDLGSPKVSLQFELTDSGLTELLKAEAVLE 576
BLAST of mRNA_H-canaliculatus_M_contigs9333.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5M1_9STRA) HSP 1 Score: 123 bits (308), Expect = 2.850e-27 Identity = 82/191 (42.93%), Postives = 111/191 (58.12%), Query Frame = 1
Query: 40 DQPLSLGAHLNGDESPCLGAAFRGANLSRAFDVRKVGMTDVTPWAVDLSFADLE--STGFKGVLGGLFGGGKKEGDNSAPTLKAAGAVFKQAPLYGENTPLP----LKKTLSITRSEDFEVNVTYAAPAEGARTQLPDGTQSMIGSYQVTGVANFAKQMEEEGRGAPKVSLRFTSGIAGVPELASAEAFVE 594
++ ++LG HLNGDE+ LG AFR ANLS AF VRKVG+T+ + + ++ + E + KG+LGGLFG D A + A A K L+ TP+ KKTL++TR D + V Y EG+R P G ++G+Y VTGVA FAK+M ++G APK+SL F +GV L AEA VE
Sbjct: 164 NRDVTLGQHLNGDEACALGTAFRAANLSTAFRVRKVGLTEKSVYPINATLVASEGGAGASKGLLGGLFG----SKDKGAKAQEEA-AWSKTTSLFKAATPVDGRHGAKKTLALTRDHDLFIKVFYDV-GEGSR--FPAGVDQVLGTYNVTGVAGFAKEMADKGLDAPKISLTFRLQPSGVMVLERAEATVE 346 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9333.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs9333.1.1 >prot_H-canaliculatus_M_contigs9333.1.1 ID=prot_H-canaliculatus_M_contigs9333.1.1|Name=mRNA_H-canaliculatus_M_contigs9333.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=335bp MGVDQPLSLGAHLNGDESPCLGAAFRGANLSRAFDVRKVGMTDVTPWAVDback to top mRNA from alignment at H-canaliculatus_M_contigs9333:559..3591- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs9333.1.1 ID=mRNA_H-canaliculatus_M_contigs9333.1.1|Name=mRNA_H-canaliculatus_M_contigs9333.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3033bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9333:559..3591- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9333:559..3591- >mRNA_H-canaliculatus_M_contigs9333.1.1 ID=mRNA_H-canaliculatus_M_contigs9333.1.1|Name=mRNA_H-canaliculatus_M_contigs9333.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1005bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9333:559..3591- (Hapterophycus canaliculatus Oshoro7m male)back to top |