mRNA_H-canaliculatus_M_contigs9315.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9315.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9315.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9315.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ0_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.490e-18
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 QARYSVGSSAKAMKLLGLTKLPPDASRAEHLSLIQQHRSARLERAKSASPMSLHRGGSSSRLVSS 195
            +A+ S GSS+KAM+LLGL+KLPPDASR EHL+LI+QHRS R ER KS+SP SL RGGS SR++SS
Sbjct:    7 EAKGSSGSSSKAMRLLGLSKLPPDASRTEHLTLIRQHRSVRKERVKSSSPASLKRGGSYSRVMSS 71
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BLAST of mRNA_H-canaliculatus_M_contigs9315.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8C9_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 5.750e-14
Identity = 38/52 (73.08%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:   37 MKLLGLTKLPPDASRAEHLSLIQQHRSARLERAKSASPMSLHRGGSSSRLVS 192
            M+LLGL+KLPPDASR+EHL+LI+QHRS R ER KS+SP SL RGGS SR++S
Sbjct:    1 MRLLGLSKLPPDASRSEHLALIRQHRSVRKERVKSSSPASLKRGGSYSRVMS 52
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9315.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.490e-1870.77protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.750e-1473.08protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9315contigH-canaliculatus_M_contigs9315:4450..4644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size195
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_002190.1
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854201.5703838-CDS-H-canaliculatus_M_contigs9315:4449..46441696854201.5703838-CDS-H-canaliculatus_M_contigs9315:4449..4644Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9315 4450..4644 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9315.1.1prot_H-canaliculatus_M_contigs9315.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9315 4450..4644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9315.1.1

>prot_H-canaliculatus_M_contigs9315.1.1 ID=prot_H-canaliculatus_M_contigs9315.1.1|Name=mRNA_H-canaliculatus_M_contigs9315.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=65bp
QARYSVGSSAKAMKLLGLTKLPPDASRAEHLSLIQQHRSARLERAKSASP
MSLHRGGSSSRLVSS
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mRNA from alignment at H-canaliculatus_M_contigs9315:4450..4644+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9315.1.1 ID=mRNA_H-canaliculatus_M_contigs9315.1.1|Name=mRNA_H-canaliculatus_M_contigs9315.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=195bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9315:4450..4644+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGCGAGATACTCTGTGGGATCCTCCGCGAAGGCGATGAAGCTCCTGGG
GCTGACCAAGCTTCCTCCGGACGCGTCCCGCGCGGAGCACCTGTCGCTCA
TCCAGCAACACCGATCCGCGCGGCTCGAGCGCGCCAAGTCGGCCTCGCCC
ATGTCTCTACACCGTGGAGGATCCTCGTCGCGGCTGGTGAGCAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9315:4450..4644+

>mRNA_H-canaliculatus_M_contigs9315.1.1 ID=mRNA_H-canaliculatus_M_contigs9315.1.1|Name=mRNA_H-canaliculatus_M_contigs9315.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=195bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9315:4450..4644+ (Hapterophycus canaliculatus Oshoro7m male)
CAGGCGAGATACTCTGTGGGATCCTCCGCGAAGGCGATGAAGCTCCTGGG
GCTGACCAAGCTTCCTCCGGACGCGTCCCGCGCGGAGCACCTGTCGCTCA
TCCAGCAACACCGATCCGCGCGGCTCGAGCGCGCCAAGTCGGCCTCGCCC
ATGTCTCTACACCGTGGAGGATCCTCGTCGCGGCTGGTGAGCAGC
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