mRNA_H-canaliculatus_M_contigs926.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs926.2.1
Unique NamemRNA_H-canaliculatus_M_contigs926.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs926.2.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CD11_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.480e-22
Identity = 52/122 (42.62%), Postives = 76/122 (62.30%), Query Frame = 3 
Query:   15 LQRACRYFESRKFQGELDHFVREHAMEFRDAVQEEEKTGEHT-HTTRYSELHEHYLNLVEALLSGFLKEEGRAPEELFSDMKDAKYNNYTALFEEHEYHGFVQSVLAAMEYQSFYRLMLDAA 377
            ++ A ++F+ +   G LD FV+EH  EF +A   E KT E   H   Y++LH  YL + E  L  FL+ EG +  E ++  KDA  +NYTALFEEH++H FV ++LA+M Y+ F+ +M  AA
Sbjct:   34 IEPAIKFFDGKDLNGMLDDFVQEHKHEFEEAA--EAKTDEEVEHKLVYTDLHARYLRIFETELDQFLEGEGCSSAEFYAQCKDAIEDNYTALFEEHQHHWFVDALLASMSYEHFFEMMTKAA 153
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BLAST of mRNA_H-canaliculatus_M_contigs926.2.1 vs.
Match: Cilia- (and flagella-associated protein 36 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8Y9_GLOUD)

HSP 1 Score: 95.1 bits (235), Expect = 1.990e-22
Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 3 
Query:   12 LLQRACRYFESRKFQGELDHFVREHAMEFRDAVQEEEKTGEHTHTTRYSELHEHYLNLVEALLSGFLKEEGRAPEELFSDMKDAKYNNYTALF-EEHEYHGFVQSVLAAMEYQSFYRLMLDAA 377
            +++RA  +  + KF+   D+F RE+A  F DAV  E K G+  H   Y ELH+ YL L E  LS F++ EG   EE F + +D    NYTALF +EH+Y  FV+ ++A+M+Y  FY LM++ A
Sbjct:    5 IIERAAEHCVTSKFEHIFDNFARENAEVFMDAV--EAKGGDVEHKHEYKELHDRYLRLFEEELSDFIESEGATIEEFFRECRDIMEGNYTALFSDEHQYKWFVEHLVASMDYNQFYALMVNEA 125
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BLAST of mRNA_H-canaliculatus_M_contigs926.2.1 vs.
Match: Cilia- (and flagella-associated protein 36 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XH63_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.720e-20
Identity = 52/123 (42.28%), Postives = 72/123 (58.54%), Query Frame = 3 
Query:   12 LLQRACRYFESRKFQGELDHFVREHAMEFRDAVQ-EEEKTGEHTHTTRYSELHEHYLNLVEALLSGFLKEEGRAPEELFSDMKDAKYNNYTALFEEHEYHGFVQSVLAAMEYQSFYRLMLDAA 377
            +++RA  Y  S KF    D F REHA  F DA + + +   EH H   Y ELH+ YL L E  L+ F++ E  A EE F + +     ++TALFEEH+Y  FV  +LA+M+Y  FY LM++ A
Sbjct:    7 IVKRAAEYCSSDKFVRVFDSFAREHAEVFADAAEGKADDDVEHKH--EYKELHDRYLQLFEGELTDFVESEAVAIEEFFHECRGVVNGHFTALFEEHQYAWFVDRLLASMDYDHFYTLMVNEA 127
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BLAST of mRNA_H-canaliculatus_M_contigs926.2.1 vs.
Match: Cilia- (and flagella-associated protein 36 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLI6_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.490e-19
Identity = 48/122 (39.34%), Postives = 71/122 (58.20%), Query Frame = 3 
Query:   12 LLQRACRYFESRKFQGELDHFVREHAMEFRDAVQEEEKTGEHTHTTRYSELHEHYLNLVEALLSGFLKEEGRAPEELFSDMKDAKYNNYTALFEEHEYHGFVQSVLAAMEYQSFYRLMLDAA 377
            +++RA  Y  S KF+   D F REHA  F DA+  + K G+  H   Y E+H+ YL L E  LS F++ EG   +E F + +       T  F+EH+Y  FV+ +LA+MEY+ F+ LM++ A
Sbjct:    6 VIERAAIYCSSTKFERIFDDFAREHAETFLDAL--DAKGGDVEHKHEYKEIHDKYLRLFEEELSDFVESEGSTIDEFFRECRAVVNAKVTGYFDEHKYVWFVEHLLASMEYELFFSLMINEA 125
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BLAST of mRNA_H-canaliculatus_M_contigs926.2.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYZ2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.160e-9
Identity = 29/68 (42.65%), Postives = 46/68 (67.65%), Query Frame = 3 
Query:  162 LHEHYLNLVEALLSGFLKEEGRAPEELFSDMKDAKYNNYTALFEEHEYHGFVQSVLAAMEYQSFYRLM 365
            LH+ YL + E+ +  FL  +  +  +LF  M+DAK + YTALFEEH++H +V S+LA + ++ F +LM
Sbjct:   74 LHQKYLRVWESEMVDFLHHQSLSMSQLFEQMEDAKLDRYTALFEEHQHHAWVDSILAVLSFEYFVQLM 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs926.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Hypothetical1.480e-2242.62protein (Fragment) n=1 Tax=Florenciella parvula Ta... [more]
Cilia-1.990e-2243.09and flagella-associated protein 36 n=1 Tax=Globisp... [more]
Cilia-3.720e-2042.28and flagella-associated protein 36 n=1 Tax=Pythium... [more]
Cilia-5.490e-1939.34and flagella-associated protein 36 n=1 Tax=Pythium... [more]
Hypothetical2.160e-942.65protein (Fragment) n=1 Tax=Aureoumbra lagunensis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs926contigH-canaliculatus_M_contigs926:1261..3242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog65071.PYU1_T013688
PFAMsARL2_Bind_BART
Model size424
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons5
Evalue9.2e-17
EggNOG OGs2C07X@1|root,2SBZW@2759|Eukaryota,1MI0U@121069|Pythiales
Descriptionfunction. Source PGD
Cds size324
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs926.2.1prot_H-canaliculatus_M_contigs926.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs926 1272..2877 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854198.5302165-UTR-H-canaliculatus_M_contigs926:1260..12711696854198.5302165-UTR-H-canaliculatus_M_contigs926:1260..1271Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs926 1261..1271 -
1696854198.596073-UTR-H-canaliculatus_M_contigs926:2877..28871696854198.596073-UTR-H-canaliculatus_M_contigs926:2877..2887Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs926 2878..2887 -
1696854198.6086228-UTR-H-canaliculatus_M_contigs926:3163..32421696854198.6086228-UTR-H-canaliculatus_M_contigs926:3163..3242Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs926 3164..3242 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854198.5464957-CDS-H-canaliculatus_M_contigs926:1271..14271696854198.5464957-CDS-H-canaliculatus_M_contigs926:1271..1427Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs926 1272..1427 -
1696854198.5606022-CDS-H-canaliculatus_M_contigs926:2038..20911696854198.5606022-CDS-H-canaliculatus_M_contigs926:2038..2091Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs926 2039..2091 -
1696854198.5724137-CDS-H-canaliculatus_M_contigs926:2579..26321696854198.5724137-CDS-H-canaliculatus_M_contigs926:2579..2632Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs926 2580..2632 -
1696854198.5850856-CDS-H-canaliculatus_M_contigs926:2815..28771696854198.5850856-CDS-H-canaliculatus_M_contigs926:2815..2877Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs926 2816..2877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs926.2.1

>prot_H-canaliculatus_M_contigs926.2.1 ID=prot_H-canaliculatus_M_contigs926.2.1|Name=mRNA_H-canaliculatus_M_contigs926.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=108bp
MEFRDAVQEEEKTGEHTHTTRYSELHEHYLNLVEALLSGFLKEEGRAPEE
LFSDMKDAKYNNYTALFEEHEYHGFVQSVLAAMEYQSFYRLMLDAAAAAS
PSPPPRK*
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mRNA from alignment at H-canaliculatus_M_contigs926:1261..3242-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs926.2.1 ID=mRNA_H-canaliculatus_M_contigs926.2.1|Name=mRNA_H-canaliculatus_M_contigs926.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1982bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs926:1261..3242- (Hapterophycus canaliculatus Oshoro7m male)
ACGGATGGGGTCTCCTCCAGCGAGCATGTCGCTACTTCGAATCGAGGAAG
TTCCAAGGGGAGCTCGACCATTTTGTAAGGTACGCGACGTAGATATCTGT
GGAGCAAAGGATTGAATGTATATGCTTATTCAGGTTAAACCTGAAACTTG
AGGTTGGACATTAACAATAGGAACCCCCGAGGAACATTTGAAGCCTCGAA
GTGGGCCTCTTCCGACAGCAGTCCTAAAAAGGAAGAAATTTATGCCATTC
CGCGGAAAAAAAAAAGGTGATGCCGAGCTCGCACTGGTAGATTATTCGTG
CGACCACGGGCCCCATTTCGCCTATCATCTGCTGTGCTAATGCTGTGATG
GATAGAGAGCATGCCATGGAGTTTCGGGATGCCGTTCAAGAGGAAGAGAA
GACCGGAGAGCACACACATACAACAAGGTAAACACGAGCCAATCAGCTCA
AGTGTTGATCCGTGACAAAGGAGCATATGCTTCGAAAAGTGAAAATGCCC
ACGAAGAACCGTTGTTTGCTGCACCGAAATGATCGTGCGGAATACCTCCG
CATGGCCGTATCGATGATTCGTGTCTTTCAGCGCTTCACTTTGAACTCAT
GACTCCTCAGATACTCGGAACTCCACGAGCACTACTTGAACCTCGTGGAA
GCCCTCCTAAGCGGTAAGTTCTGTACGGACATATTTCTCGGTATCCATGA
GACAGTCTACGCGCCTTCCACAAATTTCGCTCGACATTACTTCAATCACA
GATCTCTCTTGTACGAGAAATAAAGATTTTAAAGTTGGAAGCCGCACAGT
CCCTCTTTGACGCCATATATATCGCCAGCCGCGCGAGCCCCTGAGCACGA
TCTATGAACATTGTGAATGTGTATGTTGTATTTCAACGTGCTCGGTTGTC
TCGTGCATTAGGAAATCATTGCTGATACGAAAGATTGATTGGACTGTGTC
CGTTTCACTTTTCCTCCTTGATATATCTAACAGACTCGCGATTTCTAACA
GACATGGCCCGTTCCCAAGCTACTGGGCTAATTTTTGCCGTGGCTCTTCT
ACCTCTTTGAGCTAATCCTCCCCTTCTTCCCCCTTTCGTCTTTGCTTTTC
GCACCATATCCACCCATCTGCTTGCTCTTCAATAACGGATGATTGCTTCA
GGATTCTTGAAGGAAGAGGGGCGTGCACCTGAAGAATTGTTTTCTGACAT
GAAGGTACGGATCCGTTACGTGTGTGTGTATTCAAGATGTTGATCCACCG
TATACTTAGCACCACACACCGGAAATCTGCATGATTTATGCGTCGTGGAG
ACGATGCTTCACCGCCTTGTGGAAGCAATCTATCCGCAAAGCCCCTCAAG
CCCTAGTTGGTGGATTGCCGCACGTACAACTTCTGTTTATCCGATAGGGC
TGTGGCCAGCCTAAGGTCAACGTAAAACCTACCTTTTACGATCAGTTTAC
GTGCGTTGTTGCGTCCTTCTTCTTACCCGCTGCCACAGCATGCACAAGGC
TGAAGTTTGCTCGTGCTTTGTGGGTTTCCAGTCGCCTCGGGACCCAAAAT
AAGAAGCGATCGAGATATCTTAGCCTTGTCGGAACGTTTTCGAACATGTT
CGGGCGGTTATTCAAGCGCTGGTACTTGTGGACGGATGCGTTTGAAGAAA
GTGACGCACTGGCGTTCTGGTGCAAAACCGCGCCTGGACTTTTCTGGTGC
AATCAACAGTCGTAATCGTAATCGTAGACGTCGTGATTTTAACATCGTAA
CAATCGGCGGCGTCCACACCAACCTGGGGCACCCAAACAACGCGTCGTCA
TTGTCCACGTCGCAGGACGCCAAATACAACAACTACACAGCTCTATTCGA
GGAGCACGAGTACCACGGCTTCGTACAAAGCGTCCTCGCGGCGATGGAGT
ATCAGTCCTTCTACCGACTCATGCTGGATGCGGCGGCGGCAGCATCACCG
TCTCCACCTCCGAGGAAATGAACGCGGTATCA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs926:1261..3242-

>mRNA_H-canaliculatus_M_contigs926.2.1 ID=mRNA_H-canaliculatus_M_contigs926.2.1|Name=mRNA_H-canaliculatus_M_contigs926.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=324bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs926:1261..3242- (Hapterophycus canaliculatus Oshoro7m male)
ATGGAGTTTCGGGATGCCGTTCAAGAGGAAGAGAAGACCGGAGAGCACAC
ACATACAACAAGATACTCGGAACTCCACGAGCACTACTTGAACCTCGTGG
AAGCCCTCCTAAGCGGATTCTTGAAGGAAGAGGGGCGTGCACCTGAAGAA
TTGTTTTCTGACATGAAGGACGCCAAATACAACAACTACACAGCTCTATT
CGAGGAGCACGAGTACCACGGCTTCGTACAAAGCGTCCTCGCGGCGATGG
AGTATCAGTCCTTCTACCGACTCATGCTGGATGCGGCGGCGGCAGCATCA
CCGTCTCCACCTCCGAGGAAATGA
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