mRNA_H-canaliculatus_M_contigs920.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs920.1.1
Unique NamemRNA_H-canaliculatus_M_contigs920.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs920.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX12_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.020e-18
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:   61 GFTLETLSIDEGYWRATNDSDSILACYNPDACSGGQTGSDSFCAVGY 201
            G TLETLSID+GYWRATN+SD ILACYN DACSGGQTGS+SFCA GY
Sbjct:  541 GATLETLSIDKGYWRATNESDRILACYNADACSGGQTGSESFCASGY 587
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs920.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7J9_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 5.540e-16
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   61 GFTLETLSIDEGYWRATNDSDSILACYNPDACSGGQTGSDSFCAVGY 201
            G TLETL I  GYWRAT++SD ILACYN DAC+GGQTG+DSFCA GY
Sbjct:  586 GLTLETLDIHGGYWRATSESDKILACYNTDACTGGQTGADSFCASGY 632
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BLAST of mRNA_H-canaliculatus_M_contigs920.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S0_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.940e-15
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:   61 GFTLETLSIDEGYWRATNDSDSILACYNPDACSGGQTGSDSFCAVGY 201
            G TLETL +DEGYWRAT +S  ILACYN DAC+GG+TG+DSFCA GY
Sbjct: 1176 GLTLETLKLDEGYWRATTESVIILACYNADACAGGKTGADSFCASGY 1222
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs920.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAD4_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.110e-13
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   61 GFTLETLSIDEGYWRATNDSDSILACYNPDACSGGQTGSDSFCAVGY 201
            G TLETL IDEGYWRAT +S  ILA YN +AC+GG+TG+DSFCA GY
Sbjct:  265 GLTLETLKIDEGYWRATTESVIILASYNANACAGGKTGADSFCASGY 311
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs920.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 9.910e-13
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:   19 VCFDCPDWNECLDFGFTLETLSIDEGYWRATNDSDSILACYNPDACSGGQTGSDSFCAVGY 201
             C   PD  +    G T+ETLSID GYWRAT  S +ILAC+N DACSGG+TG+  +CA GY
Sbjct:  752 TCTITPDHAQST--GNTIETLSIDPGYWRATPSSRNILACHNADACSGGETGAADYCAEGY 810
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BLAST of mRNA_H-canaliculatus_M_contigs920.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 4.710e-12
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   67 TLETLSIDEGYWRATNDSDSILACYNPDACSGGQTGSDSFCAVGY 201
            TLETLSID GYWRATN S  +LACYN DAC GG TG+  +C  GY
Sbjct:  557 TLETLSIDPGYWRATNSSTEVLACYNVDACVGGITGATEYCVEGY 601
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs920.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMC1_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 4.720e-12
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   19 VCFDCPDWNECLDFGFTLETLSIDEGYWRATNDSDSILACYNPDACSGGQTGSDSFCAVGY 201
             C   PD  +    G T+ETLSID GYWRAT  S +ILAC+N DAC GG+TG+  +CA GY
Sbjct:  688 TCTITPDHAQST--GSTVETLSIDRGYWRATPSSRNILACHNADACLGGETGAADYCAEGY 746
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs920.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT9_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.250e-11
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   61 GFTLETLSIDEGYWRATNDSDSILACYNPDACSGGQTGSDSFCAVGY 201
            G +LETLS+  GYWRA+N S  ILACYNP+AC GGQTG D+ C  GY
Sbjct:  689 GVSLETLSMSRGYWRASNSSLIILACYNPEACLGGQTGVDNSCDNGY 735
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BLAST of mRNA_H-canaliculatus_M_contigs920.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV90_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 3.080e-11
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:   19 VCFDCPDWNECLDFGFTLETLSIDEGYWRATNDSDSILACYNPDACSGGQTGSDSFCAVGY 201
             C   PD  +    G T+ETLSID GYWRAT  +  ILAC+N DAC GG+TG+  +CA GY
Sbjct:  849 TCTITPDHTQST--GNTIETLSIDPGYWRATPSTIIILACHNSDACLGGETGAADYCAEGY 907
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BLAST of mRNA_H-canaliculatus_M_contigs920.1.1 vs.
Match: Polymorphic (Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.210e-11
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:   19 VCFDCPDWNECLDFGFTLETLSIDEGYWRATNDSDSILACYNPDACSGGQTGSDSFCAVGY 201
            +C D  + +   D   TLE LSI  GYWRAT  S+ +LACY+P+AC GG TG+  +C  GY
Sbjct:  944 MCRDLLEHSTSPDGKLTLEALSIQRGYWRATTTSEEVLACYHPEACLGGVTGTAGYCLEGY 1004
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs920.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
Uncharacterized2.020e-1885.11protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.540e-1676.60protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.940e-1574.47protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.110e-1372.34protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.910e-1357.38protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.710e-1268.89protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.720e-1255.74protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.250e-1165.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.080e-1154.10protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Polymorphic4.210e-1149.18Outer membrane protein G/I family n=1 Tax=Ectocarp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs920contigH-canaliculatus_M_contigs920:11..280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHH1
PFAMsBeta_helix,Chlam_PMP
Model size201
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.72e-13
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854196.1159782-CDS-H-canaliculatus_M_contigs920:10..1531696854196.1159782-CDS-H-canaliculatus_M_contigs920:10..153Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs920 11..153 -
1696854196.1331334-CDS-H-canaliculatus_M_contigs920:222..2801696854196.1331334-CDS-H-canaliculatus_M_contigs920:222..280Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs920 223..280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs920.1.1prot_H-canaliculatus_M_contigs920.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs920 11..280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs920.1.1

>prot_H-canaliculatus_M_contigs920.1.1 ID=prot_H-canaliculatus_M_contigs920.1.1|Name=mRNA_H-canaliculatus_M_contigs920.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=67bp
TARFGAVCFDCPDWNECLDFGFTLETLSIDEGYWRATNDSDSILACYNPD
ACSGGQTGSDSFCAVGY
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mRNA from alignment at H-canaliculatus_M_contigs920:11..280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs920.1.1 ID=mRNA_H-canaliculatus_M_contigs920.1.1|Name=mRNA_H-canaliculatus_M_contigs920.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=270bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs920:11..280- (Hapterophycus canaliculatus Oshoro7m male)
ACTGCACGCTTTGGGGCGGTGTGCTTCGACTGTCCTGATTGGAACGAGTG
CCTTGACTGTAACATCACGAGGGGCACCGTCACGCCGGAATGTGATGCGC
CACTGGAACACAGTTCGGCAGATGGAGTTGGCTTCACCTTGGAAACACTC
AGCATTGATGAAGGCTACTGGCGCGCAACGAACGACAGCGACAGCATCCT
GGCATGCTACAATCCGGATGCTTGCAGCGGGGGACAAACAGGGTCGGACA
GCTTCTGTGCCGTAGGGTAC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs920:11..280-

>mRNA_H-canaliculatus_M_contigs920.1.1 ID=mRNA_H-canaliculatus_M_contigs920.1.1|Name=mRNA_H-canaliculatus_M_contigs920.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=201bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs920:11..280- (Hapterophycus canaliculatus Oshoro7m male)
ACTGCACGCTTTGGGGCGGTGTGCTTCGACTGTCCTGATTGGAACGAGTG
CCTTGACTTTGGCTTCACCTTGGAAACACTCAGCATTGATGAAGGCTACT
GGCGCGCAACGAACGACAGCGACAGCATCCTGGCATGCTACAATCCGGAT
GCTTGCAGCGGGGGACAAACAGGGTCGGACAGCTTCTGTGCCGTAGGGTA
C
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