mRNA_H-canaliculatus_M_contigs9136.3.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9136.3.1
Unique NamemRNA_H-canaliculatus_M_contigs9136.3.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9136.3.1 vs.
Match: Tub (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS0_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 1.910e-35
Identity = 69/91 (75.82%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 MFLLQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDLLHTVRGKIELLTTNIDYRFIPQVGEDRFHLDYRAPINAFQAFCISLAQFNF 273
            MFLLQSREPTYT GNYRLNFHGRVTVPSVKNFQLVSPDD LHTV                 +VGEDRFHLDYRAPINAFQA CIS+AQFNF
Sbjct:  517 MFLLQSREPTYTKGNYRLNFHGRVTVPSVKNFQLVSPDDALHTVCQ-------------FGKVGEDRFHLDYRAPINAFQALCISIAQFNF 594          
BLAST of mRNA_H-canaliculatus_M_contigs9136.3.1 vs.
Match: Tubby (C-terminal-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X0_9STRA)

HSP 1 Score: 112 bits (279), Expect = 9.560e-29
Identity = 56/91 (61.54%), Postives = 70/91 (76.92%), Query Frame = 1
Query:    1 MFLLQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDLLHTVRGKIELLTTNIDYRFIPQVGEDRFHLDYRAPINAFQAFCISLAQFNF 273
            MFLLQ+++P + NGNYRLNF GRVTVPSVKNFQLV+PDD+ + V G+              +VG+DRFHLD+RAP+NAFQAF I+L+QFNF
Sbjct:  153 MFLLQTKDPVFENGNYRLNFRGRVTVPSVKNFQLVAPDDVDYIV-GQFG------------KVGDDRFHLDFRAPLNAFQAFAIALSQFNF 230          
BLAST of mRNA_H-canaliculatus_M_contigs9136.3.1 vs.
Match: Tulp3 (protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y244_SYMMI)

HSP 1 Score: 107 bits (266), Expect = 1.270e-27
Identity = 55/92 (59.78%), Postives = 64/92 (69.57%), Query Frame = 1
Query:    1 MFLLQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDLLHTVR--GKIELLTTNIDYRFIPQVGEDRFHLDYRAPINAFQAFCISLAQFN 270
            MFLL S+EP Y NGNYRLNFHGRV+VPSVKNFQL SPDD  H +   GKI               G+DRFHLDY+AP+NAFQAF ++L  F+
Sbjct:   78 MFLLASKEPVYENGNYRLNFHGRVSVPSVKNFQLSSPDDPGHVICQFGKI---------------GDDRFHLDYKAPLNAFQAFSLALCHFD 154          
BLAST of mRNA_H-canaliculatus_M_contigs9136.3.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V188_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.030e-26
Identity = 54/93 (58.06%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    1 MFLLQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDLLHTVR--GKIELLTTNIDYRFIPQVGEDRFHLDYRAPINAFQAFCISLAQFNF 273
            MF LQ+++P +  GNYRLNFHGRVTV SVKNFQL SPDD+ + V   GK++               EDRFHLDYRAP+NAFQAF ++L QFNF
Sbjct:  132 MFCLQTKDPVFEKGNYRLNFHGRVTVASVKNFQLCSPDDIDYVVCQFGKVD---------------EDRFHLDYRAPLNAFQAFALALVQFNF 209          
BLAST of mRNA_H-canaliculatus_M_contigs9136.3.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YIB9_HETAK)

HSP 1 Score: 106 bits (264), Expect = 2.410e-26
Identity = 54/93 (58.06%), Postives = 64/93 (68.82%), Query Frame = 1
Query:    1 MFLLQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDLLHTVR--GKIELLTTNIDYRFIPQVGEDRFHLDYRAPINAFQAFCISLAQFNF 273
            MF  +S++P +  GNYRLNFHGRVTV SVKNFQLVSPDD+ + V   GK++               EDRFHLDYRAP NAFQAF ++L QFNF
Sbjct:  169 MFYFESKDPVFEKGNYRLNFHGRVTVASVKNFQLVSPDDIDYVVCQFGKVD---------------EDRFHLDYRAPFNAFQAFAVTLCQFNF 246          
BLAST of mRNA_H-canaliculatus_M_contigs9136.3.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GC62_9STRA)

HSP 1 Score: 100 bits (249), Expect = 4.230e-24
Identity = 48/90 (53.33%), Postives = 62/90 (68.89%), Query Frame = 1
Query:   10 LQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDLLHTVR--GKIELLTTNIDYRFIPQVGEDRFHLDYRAPINAFQAFCISLAQFNF 273
            L+ +EP + NGNYRLNFHGRVTVPSVKNFQLV P D+   +   GK++               +DRFHLD++ P+N FQAFC++LAQFN+
Sbjct:  173 LERKEPVFENGNYRLNFHGRVTVPSVKNFQLVDPRDVADVICQFGKVD---------------DDRFHLDFKGPLNPFQAFCVALAQFNY 247          
BLAST of mRNA_H-canaliculatus_M_contigs9136.3.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D0G1_9STRA)

HSP 1 Score: 100 bits (249), Expect = 6.730e-23
Identity = 48/90 (53.33%), Postives = 62/90 (68.89%), Query Frame = 1
Query:   10 LQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDLLHTVR--GKIELLTTNIDYRFIPQVGEDRFHLDYRAPINAFQAFCISLAQFNF 273
            L+ +EP + NGNYRLNFHGRVTVPSVKNFQLV P D+   +   GK++               +DRFHLD++ P+N FQAFC++LAQFN+
Sbjct:  392 LERKEPVFENGNYRLNFHGRVTVPSVKNFQLVDPRDVADVICQFGKVD---------------DDRFHLDFKGPLNPFQAFCVALAQFNY 466          
BLAST of mRNA_H-canaliculatus_M_contigs9136.3.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H5B0_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.920e-22
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    7 LLQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDLLHTVRGKIELLTTNIDYRFIPQVGEDRFHLDYRAPINAFQAFCISLAQFNF 273
            + + +EP + NGNYRLNF GRVTVPSVKNFQLVS DD+            ++I  +F  +V +DRFHLD++ P+NAFQAFC+ LAQFN+
Sbjct:  353 VFERKEPVFENGNYRLNFRGRVTVPSVKNFQLVSTDDV------------SDIKCQF-GKVADDRFHLDFKHPMNAFQAFCVCLAQFNY 428          
BLAST of mRNA_H-canaliculatus_M_contigs9136.3.1 vs.
Match: Tub (domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C6V0_PYTIN)

HSP 1 Score: 79.0 bits (193), Expect = 5.620e-17
Identity = 45/99 (45.45%), Postives = 58/99 (58.59%), Query Frame = 1
Query:    7 LLQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDLLHTVRGKIELLTTNIDYRFIP-----------QVGEDRFHLDYRAPINAFQAFCISLAQFN 270
            + Q++ P + NG YRLNF+GRV VPSVKNFQLV  +  L +   +I+  +T       P           +V E  FHLD+RAPI   QAF I+LAQFN
Sbjct:   21 VFQNKXPVFENGFYRLNFNGRVQVPSVKNFQLVEAELPLDSDGNRIQSGSTTGSMFATPASTPTVALQFGKVDETTFHLDFRAPITPIQAFAIALAQFN 119          
BLAST of mRNA_H-canaliculatus_M_contigs9136.3.1 vs.
Match: Tub (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WNH4_GLOUD)

HSP 1 Score: 83.6 bits (205), Expect = 7.450e-17
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    7 LLQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDLLHTVRGKIELLTTNIDYRFIPQVGEDRFHLDYRAPINAFQAFCISLAQFN 270
            + +++EP + NG YRLNF+GRV+VPSVKNFQLV      +T  G      T   Y    +V + +FHLD+RAP+   QAF I+LAQFN
Sbjct:  344 VFENKEPVFDNGFYRLNFNGRVSVPSVKNFQLVRQSSNGNT--GAAAKAETETVYLQFGKVDDKKFHLDFRAPLTPLQAFAIALAQFN 429          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9136.3.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Tub1.910e-3575.82domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Tubby9.560e-2961.54C-terminal-like domain-containing protein n=1 Tax=... [more]
Tulp31.270e-2759.78protein n=1 Tax=Symbiodinium microadriaticum TaxID... [more]
Hypothetical1.030e-2658.06protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical2.410e-2658.06protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical4.230e-2453.33protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Hypothetical6.730e-2353.33protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Hypothetical1.920e-2255.06protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Tub5.620e-1745.45domain-containing protein n=2 Tax=Pythium insidios... [more]
Tub7.450e-1748.86domain-containing protein n=1 Tax=Globisporangium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9136contigH-canaliculatus_M_contigs9136:4054..4791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FYS0
PFAMsTub
Model size276
Max annot lvl2759|Eukaryota
KEGG koko:K19600
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.13e-36
EggNOG OGsKOG2502@1|root,KOG2502@2759|Eukaryota
Descriptionphosphatidylinositol binding
Cds size276
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854191.7172935-CDS-H-canaliculatus_M_contigs9136:4053..41981696854191.7172935-CDS-H-canaliculatus_M_contigs9136:4053..4198Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9136 4054..4198 -
1696854191.7310038-CDS-H-canaliculatus_M_contigs9136:4660..47911696854191.7310038-CDS-H-canaliculatus_M_contigs9136:4660..4791Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9136 4661..4791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9136.3.1prot_H-canaliculatus_M_contigs9136.3.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9136 4054..4791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9136.3.1

>prot_H-canaliculatus_M_contigs9136.3.1 ID=prot_H-canaliculatus_M_contigs9136.3.1|Name=mRNA_H-canaliculatus_M_contigs9136.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=92bp
MFLLQSREPTYTNGNYRLNFHGRVTVPSVKNFQLVSPDDLLHTVRGKIEL
LTTNIDYRFIPQVGEDRFHLDYRAPINAFQAFCISLAQFNF*
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mRNA from alignment at H-canaliculatus_M_contigs9136:4054..4791-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9136.3.1 ID=mRNA_H-canaliculatus_M_contigs9136.3.1|Name=mRNA_H-canaliculatus_M_contigs9136.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=738bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9136:4054..4791- (Hapterophycus canaliculatus Oshoro7m male)
ATGTTTCTTCTCCAGTCAAGAGAGCCGACGTACACGAACGGAAATTACCG ACTCAATTTCCACGGGCGTGTGACCGTGCCGTCGGTGAAAAACTTCCAGC TCGTCAGCCCCGACGACTTGCTTCACACAGTGTGCCAGTTCGGAAAGGTG CTTATGAGTTGTTCCTGTAAAAACGTTCTCGTGAATCATGCAGCAAACCT GCTCGGTCTGCACTAGTGTCCCTCGACGACGCCGTTGAACGTGTGTGTAG CTCTACGTATGCAGCCCACGTCACTTTCGATCCTGCTACAGTGTGGTGAG TATTCTACACACACCGTGCTTTCGGGCTGTGGGGGGATACGTGAGGCTGT TTGTGCTAGTTGTGCTTGTTGTGCTGGTTGATAGTAGTTGACCGCGATTA GTGTGCAGCACTTTCCTCGACAGCGAAGTGCCTCTCTCTGCAGCTCGGTT GGTGCGAGATGACTATACGCGACAGGCGCCCCGGGACAGAAAGAACGCCA CATGAAATGGTGGTTTGTCGTCACCAACCTTCTTACAGGGAAGATTTAAG CACGCATCAACATGCCAAGATACGGATATGCATTTCAAAAAAGACGGGGG AAAATCGAGTTGCTGACTACAAATATCGATTATCGGTTCATTCCGCAGGT GGGAGAAGATCGGTTCCACCTGGACTACCGCGCCCCCATCAATGCCTTCC AAGCCTTTTGCATCTCCCTCGCGCAGTTCAACTTCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9136:4054..4791-

>mRNA_H-canaliculatus_M_contigs9136.3.1 ID=mRNA_H-canaliculatus_M_contigs9136.3.1|Name=mRNA_H-canaliculatus_M_contigs9136.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=276bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9136:4054..4791- (Hapterophycus canaliculatus Oshoro7m male)
ATGTTTCTTCTCCAGTCAAGAGAGCCGACGTACACGAACGGAAATTACCG
ACTCAATTTCCACGGGCGTGTGACCGTGCCGTCGGTGAAAAACTTCCAGC
TCGTCAGCCCCGACGACTTGCTTCACACAGTACGGGGGAAAATCGAGTTG
CTGACTACAAATATCGATTATCGGTTCATTCCGCAGGTGGGAGAAGATCG
GTTCCACCTGGACTACCGCGCCCCCATCAATGCCTTCCAAGCCTTTTGCA
TCTCCCTCGCGCAGTTCAACTTCTGA
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