mRNA_H-canaliculatus_M_contigs9102.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9102.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9102.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9102.1.1 vs.
Match: CMD (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXH5_9PHAE)

HSP 1 Score: 278 bits (712), Expect = 1.400e-89
Identity = 138/218 (63.30%), Postives = 165/218 (75.69%), Query Frame = 1 
Query:    1 WSMKHRDGGRQPIPFTEEEIPEVLGTVMLFDILNRVVDAFVSKTESGPMFPLPMRRMMEIKPMTPAVQRVTSWAMSWLMHGEDSKIEAGKVLREINEITPIIKGFKGADEIPPLTLPQELSWAASGXXXXXXXXXXIATAFAFLAAEADLLAGSFVPPAVRTYMESWVSTWDGGVAPEGTLETWLDHAV--AAGGFGEGRKAEVAMTRLMLVTIIASH 648
            WS++HRDG  Q  P T E++PEV+GT MLFDILNRVVD FVSKTE+GPMFPLPMR MM+++P TP +QR  SW MSW+MHGED K+EAGKVL+EINE+ PIIKGF+G  +  P+ LP++LSWA  G          IA AFAFLAAEA+LLA +FVPPAV+++ ESWVS+WDGG A  G LE WL   V   A G GEG K +V M RLMLVTI+ASH
Sbjct:  171 WSIRHRDGKEQAAPCTPEQLPEVVGTAMLFDILNRVVDTFVSKTEAGPMFPLPMRMMMKVQPATPLLQRAMSWMMSWMMHGEDVKVEAGKVLKEINEVHPIIKGFRGCADETPMALPEQLSWATGGDET-------IAAAFAFLAAEAELLAHAFVPPAVKSFTESWVSSWDGGAAQIGELEEWLGPTVRVTASGLGEGDKGDVVMLRLMLVTIVASH 381
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9102.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
CMD1.400e-8963.30domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9102contigH-canaliculatus_M_contigs9102:1525..4814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size648
Hectar predicted targeting categoryother localisation
Exons5
Cds size642
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9102.1.1prot_H-canaliculatus_M_contigs9102.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9102 1525..4808 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854189.849255-CDS-H-canaliculatus_M_contigs9102:1524..16081696854189.849255-CDS-H-canaliculatus_M_contigs9102:1524..1608Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9102 1525..1608 -
1696854189.8601787-CDS-H-canaliculatus_M_contigs9102:2521..27941696854189.8601787-CDS-H-canaliculatus_M_contigs9102:2521..2794Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9102 2522..2794 -
1696854189.8729186-CDS-H-canaliculatus_M_contigs9102:3179..33541696854189.8729186-CDS-H-canaliculatus_M_contigs9102:3179..3354Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9102 3180..3354 -
1696854189.8844466-CDS-H-canaliculatus_M_contigs9102:3983..40511696854189.8844466-CDS-H-canaliculatus_M_contigs9102:3983..4051Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9102 3984..4051 -
1696854189.8944612-CDS-H-canaliculatus_M_contigs9102:4766..48081696854189.8944612-CDS-H-canaliculatus_M_contigs9102:4766..4808Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9102 4767..4808 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854189.9042568-UTR-H-canaliculatus_M_contigs9102:4808..48141696854189.9042568-UTR-H-canaliculatus_M_contigs9102:4808..4814Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs9102 4809..4814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9102.1.1

>prot_H-canaliculatus_M_contigs9102.1.1 ID=prot_H-canaliculatus_M_contigs9102.1.1|Name=mRNA_H-canaliculatus_M_contigs9102.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=214bp
MKHRDGGRQPIPFTEEEIPEVLGTVMLFDILNRVVDAFVSKTESGPMFPL
PMRRMMEIKPMTPAVQRVTSWAMSWLMHGEDSKIEAGKVLREINEITPII
KGFKGADEIPPLTLPQELSWAASGSGSGNGSKATIATAFAFLAAEADLLA
GSFVPPAVRTYMESWVSTWDGGVAPEGTLETWLDHAVAAGGFGEGRKAEV
AMTRLMLVTIIASH
back to top

mRNA from alignment at H-canaliculatus_M_contigs9102:1525..4814-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9102.1.1 ID=mRNA_H-canaliculatus_M_contigs9102.1.1|Name=mRNA_H-canaliculatus_M_contigs9102.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3290bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9102:1525..4814- (Hapterophycus canaliculatus Oshoro7m male)
TGGTCCATGAAGCACCGGGACGGGGGGCGACAGCCCATACCCTTCACGGT
AAAACTTGCATGAAGGGCGGGAGGGGATTGTTGTTGGGCGCGGGGTGACG
GTTGGGGTCGGGAAGGGTGGGTCGCTGGGAGTCAACTGTAACCGAGGTTG
GATTAATTTTGTTTTTGCATGCTTAAGAGTATGGTGTGCTTCCACAACCG
ATTCCTCACCAAGTCGCGGAGGGTTTTGGAATCAAGGCATGCTTTTGCGA
GGAAACGCTGGCGAATCAGCATAGACGTCAATCTCCCGTGTCGGAGCAGA
CAATTTCCTGTGCAAGGAGCTGGGAGCATTTACATGGTATCGTATTATGC
CCGATGTTGCCAGCAGCACCAACATCAGGGGCTACCGCAGCAGTGGACCA
GGACGAGAGCTGCATTTTAGTAGCTGCATGGGACGCAGGCACCACCGAGA
TTTCCATGCCGGTTCGTGTGGTACCGATATCGGTTTGAAATATCAGCAAC
TTTTGCCCCGAAAGTCCGCTCCTCTGCGTACTCCGTAGTCTCGAATGTGC
ATCGACATGGACCTGGGCTGGCTGCATCATTCCCCGCACGCACCCTCTCG
CTCCACATTTTTTGGCGAGGAATGGCAGTTTTAAACCTCCATCGCTGTAC
CGATCTAAAACAACCAACTAAAGCTTAAGTCCCCCGGCGATGCATCCTTG
TTGGGCCATTTTTGGCATCCCTCCTTTTTCTGTGTTCGACATCCCCGGAC
CTGATCTTTCCAGGAGGAAGAGATCCCGGAGGTCTTGGGGACGGTCATGC
TCTTCGACATCCTCAACCGCGTAGTCGACGCGTAAGTAGCGGCTAGCCGC
CAAAGGTTGGTGTTGACATCGGTGGCGCCGTTGCTTCTGTGATTATTGTT
GTTGTCGTTGACCGCGTTGACTTCGACGTTTATGGCACCTGCGTTAGAGC
TTCAGTGTCCAAGAGGAAGAGCGTGCATGTGAGAGTGTCGGTGCCGTTGT
TGGTGACTTTCGGCAGCGGCAGGAATGAGGCGTGTATGTGCAAAAGGGGC
CCCGGGTGCTGTAGTGGTGTTGACACGGCATCATTTACCATGCAACGGGA
AAATAATGGAGAAAAGTGGCGTTGGAGTTCACGGGTACTGCTGTTATCGA
AGGAAGGCGTAAAGCTTAGTCTACGGCTTTTCTTTTCTTGTCTTCCTGAA
GATATTCTTGGTTAAGCTTTTGTGATTTTTTGTGGCCTTTCCCTTCAACT
TCTCGTTCTGCAGCATGTCCTTCCGTCATCATTCTTTCACCGCTCCAGGT
CCGATGTGTTCCACTGATCCCGAGCATCAAGCAGACCATCGATGGATCAA
AAACGGACGCGATCTCGCCCATCTAGGCACACTCACCCGTTGGCTCCCAC
GGTACGATTCATGAGGAAGTTCGTTGACGTGCTAAACAAGGCGCTTTTTG
AATACGGCAGGTTTGTCTCGAAGACGGAGTCCGGGCCGATGTTTCCCCTG
CCCATGCGGAGGATGATGGAAATCAAACCCATGACTCCGGCGGTGCAACG
CGTGACAAGCTGGGCGATGTCTTGGCTGATGCACGGAGAAGATTCAAAGA
TCGAGGCCGGAAAGGTTCTCCGGGAGATCAACGAGGTGCCACTCGCTCTA
GATCCCGCACGATTGACTCTGGTTTCGATCTTGTCTTGCGTCGTTTTCGA
GGGGGGTGGCCAGTGTGGAGATCAACCCGTGATTCGGGTACGAACGAGGC
TGATTTGGGGAGCCCCTTGCCGCAGGCATGCAACAGCGCCCCCTCCCTGC
CAAAGCCGTGGATCTCGTGCATAGTTGAGACCGCCTGTCTCCCATCAGAA
CAGGGATGCGTGTTCGAGTCTCTAGGAGACGGAGATGAGCAACAGATGGG
CACACACTGCGCCCACTCGCAGGCAATACCACCCTTCTCAACGCCTACAA
ACACCGACACAGCCCCCCCACCGCTCCAGCCAATACGCTGCTTGCTTTGC
ATGCATCGACAACACCGTAGATAACCCCGATCATCAAGGGCTTCAAAGGC
GCCGACGAGATACCGCCGCTGACGCTTCCCCAAGAGCTCTCGTGGGCCGC
CTCCGGCAGCGGCAGCGGCAACGGCAGCAAGGCTACCATCGCCACCGCCT
TCGCCTTCCTTGCGGCGGAGGCGGACCTACTGGCGGGAAGCTTCGTGCCG
CCGGCCGTGAGGACCTACATGGAGTCATGGGTTTCCACGTGGGATGGCGG
GGTCGCTCCGGAGGGGACGCTGGAGACTTGGCTGGACCATGCGGTGAGAT
TCGCGTGTTCGATGAGAGGAAGAGGCGAGTCTCGATGGTTGCTGATGTGA
GCTGCCTTGTTGCTCATCTTCTTGGGGGTTGGCGCTGACACGGCTTCTGG
GATGTCGGCATGCCTGCCTGGCACACGACGGGGAGACAGCACGCTACACA
GAAGGCAACCAAACTCGACTGAGAGGTTTGGTGTAGATCTCATTTGGTCG
GCTGTCGTTCGCAAACCCCAGTGAGACCCACGGGGCGTGTACCCGTGTAT
CGCGAAAGGGGCCGACGAGGACGATGAATACGCCTCTTATCGGTTTTGCG
TGGACGCGTTTTCTCACGAGGCGTGCTTCGATGCCACGCAAGGTTTCACG
CACACCCTGTGGCTTGAGAGTGAAAGCTGACGGCGATTGCGGATGAGATT
CGTGGGTAAACTATCATATTCTACGATGCAGGTTGTTCTCGGTCGCCCGT
GCAGGATAACACGCTATTTGCCGACGATGGATCTTGGTACACCTCCGAGA
AGGGTGTACATCAAGCCACACTCCGTGGCAGCCAACTAGCACTCTGATGG
TGGCGTAGTCTCTAGCTTTCTGCGGGGGAGCCTAGGCTGGTCGCCTACCG
CCGAATGATCCCTTGCATCTCTCGCACCAGAATTGCTTTGAAGGTGTGTC
GTTACGTCAAAGCGAGAATTGTGGCTGTAGGAGGGGTACTTGCGTGCGCA
ATTTGATGGGCGCTATCAAATGCACAAGAGAAGGACTAGAGTGTTGGCAA
CTTACGTTTCGACTAGTGAAACTCCCACAGCCTGATTGCTTTTGTCCTCT
GGGGATTGTTTTTCTTCTGTTTTATTTGGATGCGACTAGTTTGTTCGACG
ATATTCTTCCACTCGATATTCTGGGCTTTCGTTTTTTCTGCGTGTCCTTA
TTCAAGGTGGCCGCTGGCGGTTTCGGTGAGGGAAGAAAAGCCGAGGTTGC
CATGACCAGGCTGATGCTGGTCACGATCATCGCCAGCCAC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9102:1525..4814-

>mRNA_H-canaliculatus_M_contigs9102.1.1 ID=mRNA_H-canaliculatus_M_contigs9102.1.1|Name=mRNA_H-canaliculatus_M_contigs9102.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=642bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9102:1525..4814- (Hapterophycus canaliculatus Oshoro7m male)
ATGAAGCACCGGGACGGGGGGCGACAGCCCATACCCTTCACGGAGGAAGA
GATCCCGGAGGTCTTGGGGACGGTCATGCTCTTCGACATCCTCAACCGCG
TAGTCGACGCGTTTGTCTCGAAGACGGAGTCCGGGCCGATGTTTCCCCTG
CCCATGCGGAGGATGATGGAAATCAAACCCATGACTCCGGCGGTGCAACG
CGTGACAAGCTGGGCGATGTCTTGGCTGATGCACGGAGAAGATTCAAAGA
TCGAGGCCGGAAAGGTTCTCCGGGAGATCAACGAGATAACCCCGATCATC
AAGGGCTTCAAAGGCGCCGACGAGATACCGCCGCTGACGCTTCCCCAAGA
GCTCTCGTGGGCCGCCTCCGGCAGCGGCAGCGGCAACGGCAGCAAGGCTA
CCATCGCCACCGCCTTCGCCTTCCTTGCGGCGGAGGCGGACCTACTGGCG
GGAAGCTTCGTGCCGCCGGCCGTGAGGACCTACATGGAGTCATGGGTTTC
CACGTGGGATGGCGGGGTCGCTCCGGAGGGGACGCTGGAGACTTGGCTGG
ACCATGCGGTGGCCGCTGGCGGTTTCGGTGAGGGAAGAAAAGCCGAGGTT
GCCATGACCAGGCTGATGCTGGTCACGATCATCGCCAGCCAC
back to top