mRNA_H-canaliculatus_M_contigs907.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs907.1.1
Unique NamemRNA_H-canaliculatus_M_contigs907.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs907.1.1 vs.
Match: Radical (SAM core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLN5_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 4.590e-15
Identity = 36/43 (83.72%), Postives = 39/43 (90.70%), Query Frame = 1
Query:    1 HEGTPFASSSLETSEAFRQALAARGQLCTFRDSRGDDGMAACG 129
            H GTPF+ SS E +EAFR+ALAARGQLCTFRDSRGDDGMAACG
Sbjct:  525 HAGTPFSPSSPEAAEAFRRALAARGQLCTFRDSRGDDGMAACG 567          
BLAST of mRNA_H-canaliculatus_M_contigs907.1.1 vs.
Match: Radical (SAM domain-containing n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XDR4_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 7.120e-8
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1
Query:    1 HEGTPFASSSLETSEAFRQALAARGQLCTFRDSRGDDGMAACG 129
            HEGT F +SS+E  EAFR  +    ++CT RDSRGDD MAACG
Sbjct:  421 HEGTQFTASSMEQVEAFRDVVMQARRVCTIRDSRGDDEMAACG 463          
BLAST of mRNA_H-canaliculatus_M_contigs907.1.1 vs.
Match: Radical (SAM core domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WFU4_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 1.330e-7
Identity = 27/43 (62.79%), Postives = 30/43 (69.77%), Query Frame = 1
Query:    1 HEGTPFASSSLETSEAFRQALAARGQLCTFRDSRGDDGMAACG 129
            H+GT F  S+ E   AFR AL  RG +CT RDSRGDD MAACG
Sbjct:  517 HKGTRFQPSTDEDISAFRSALIQRGMVCTIRDSRGDDEMAACG 559          
BLAST of mRNA_H-canaliculatus_M_contigs907.1.1 vs.
Match: Radical (SAM core domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GCQ8_GONPE)

HSP 1 Score: 53.9 bits (128), Expect = 3.410e-7
Identity = 27/43 (62.79%), Postives = 29/43 (67.44%), Query Frame = 1
Query:    1 HEGTPFASSSLETSEAFRQALAARGQLCTFRDSRGDDGMAACG 129
            H GT F  S+ E   AFR AL  RG +CT RDSRGDD MAACG
Sbjct:  460 HAGTRFQPSTDEDVSAFRSALVQRGLVCTIRDSRGDDEMAACG 502          
BLAST of mRNA_H-canaliculatus_M_contigs907.1.1 vs.
Match: Radical (SAM core domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TBN4_CHLIN)

HSP 1 Score: 53.5 bits (127), Expect = 4.660e-7
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 1
Query:    1 HEGTPFASSSLETSEAFRQALAARGQLCTFRDSRGDDGMAACG 129
            H+GT F  S+ E   AFR AL  +G +CT RDSRGDD MAACG
Sbjct:  498 HKGTRFQPSTDEDISAFRSALIQQGMVCTIRDSRGDDEMAACG 540          
BLAST of mRNA_H-canaliculatus_M_contigs907.1.1 vs.
Match: Radical (SAM core domain-containing protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UF95_VOLCA)

HSP 1 Score: 52.8 bits (125), Expect = 8.340e-7
Identity = 26/43 (60.47%), Postives = 28/43 (65.12%), Query Frame = 1
Query:    1 HEGTPFASSSLETSEAFRQALAARGQLCTFRDSRGDDGMAACG 129
            H GT F  S+ E   AFR AL   G +CT RDSRGDD MAACG
Sbjct:  243 HAGTRFQPSTEEAVTAFRSALVQAGMVCTIRDSRGDDEMAACG 285          
BLAST of mRNA_H-canaliculatus_M_contigs907.1.1 vs.
Match: Radical (SAM core domain-containing protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3E0Y6_CHLRE)

HSP 1 Score: 52.8 bits (125), Expect = 8.720e-7
Identity = 26/43 (60.47%), Postives = 29/43 (67.44%), Query Frame = 1
Query:    1 HEGTPFASSSLETSEAFRQALAARGQLCTFRDSRGDDGMAACG 129
            H+GT F  S+ E   AFR AL   G +CT RDSRGDD MAACG
Sbjct:  498 HKGTRFQPSTDEDISAFRSALIRSGMVCTIRDSRGDDEMAACG 540          
BLAST of mRNA_H-canaliculatus_M_contigs907.1.1 vs.
Match: Radical (SAM core domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4EW54_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-6
Identity = 26/43 (60.47%), Postives = 28/43 (65.12%), Query Frame = 1
Query:    1 HEGTPFASSSLETSEAFRQALAARGQLCTFRDSRGDDGMAACG 129
            H GT F  S+ E   AFR  L  RG +CT RDSRGDD MAACG
Sbjct:  600 HVGTRFQPSTDEAVTAFRSVLVQRGFVCTIRDSRGDDEMAACG 642          
BLAST of mRNA_H-canaliculatus_M_contigs907.1.1 vs.
Match: Radical (SAM core domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q6C0_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 2.230e-6
Identity = 25/42 (59.52%), Postives = 29/42 (69.05%), Query Frame = 1
Query:    4 EGTPFASSSLETSEAFRQALAARGQLCTFRDSRGDDGMAACG 129
            +GT F  SS+E   AFR  L   G++CT RDSRGDD MAACG
Sbjct:  326 QGTRFRPSSIEQVLAFRSVLIQAGRICTIRDSRGDDEMAACG 367          
BLAST of mRNA_H-canaliculatus_M_contigs907.1.1 vs.
Match: Radical (SAM core domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YJJ5_COCSC)

HSP 1 Score: 51.2 bits (121), Expect = 3.050e-6
Identity = 25/43 (58.14%), Postives = 29/43 (67.44%), Query Frame = 1
Query:    1 HEGTPFASSSLETSEAFRQALAARGQLCTFRDSRGDDGMAACG 129
            H GTPF +S+ E    F+  L A G +CT RDSRGDD MAACG
Sbjct:  329 HAGTPFRASTQEQVLEFQAVLKAAGLVCTVRDSRGDDEMAACG 371          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs907.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
Radical4.590e-1583.72SAM core domain-containing protein n=2 Tax=Ectocar... [more]
Radical7.120e-860.47SAM domain-containing n=1 Tax=Trebouxia sp. A1-2 T... [more]
Radical1.330e-762.79SAM core domain-containing protein n=1 Tax=Chlamyd... [more]
Radical3.410e-762.79SAM core domain-containing protein n=1 Tax=Gonium ... [more]
Radical4.660e-760.47SAM core domain-containing protein n=1 Tax=Chlamyd... [more]
Radical8.340e-760.47SAM core domain-containing protein (Fragment) n=1 ... [more]
Radical8.720e-760.47SAM core domain-containing protein n=2 Tax=Chlamyd... [more]
Radical2.230e-660.47SAM core domain-containing protein n=1 Tax=Volvox ... [more]
Radical2.230e-659.52SAM core domain-containing protein n=1 Tax=Scenede... [more]
Radical3.050e-658.14SAM core domain-containing protein n=1 Tax=Coccomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs907contigH-canaliculatus_M_contigs907:1..132 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LLN5
PFAMsFer4_14,Radical_SAM
Model size132
Max annot lvl2759|Eukaryota
KEGG koko:K06941
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue7.52e-16
EggNOG OGsCOG0820@1|root,2QV91@2759|Eukaryota
EC2.1.1.192
DescriptionRadical SAM superfamily
Cds size132
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854187.7568953-CDS-H-canaliculatus_M_contigs907:0..1321696854187.7568953-CDS-H-canaliculatus_M_contigs907:0..132Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs907 1..132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs907.1.1prot_H-canaliculatus_M_contigs907.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs907 1..132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs907.1.1

>prot_H-canaliculatus_M_contigs907.1.1 ID=prot_H-canaliculatus_M_contigs907.1.1|Name=mRNA_H-canaliculatus_M_contigs907.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=44bp
HEGTPFASSSLETSEAFRQALAARGQLCTFRDSRGDDGMAACG*
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mRNA from alignment at H-canaliculatus_M_contigs907:1..132+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs907.1.1 ID=mRNA_H-canaliculatus_M_contigs907.1.1|Name=mRNA_H-canaliculatus_M_contigs907.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=132bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs907:1..132+ (Hapterophycus canaliculatus Oshoro7m male)
CACGAGGGGACGCCGTTTGCGAGCTCGTCCTTAGAAACCTCGGAGGCGTT CCGACAGGCCTTGGCGGCCCGGGGGCAGCTGTGCACATTCCGAGATAGCC GTGGGGATGACGGGATGGCGGCTTGCGGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs907:1..132+

>mRNA_H-canaliculatus_M_contigs907.1.1 ID=mRNA_H-canaliculatus_M_contigs907.1.1|Name=mRNA_H-canaliculatus_M_contigs907.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=132bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs907:1..132+ (Hapterophycus canaliculatus Oshoro7m male)
CACGAGGGGACGCCGTTTGCGAGCTCGTCCTTAGAAACCTCGGAGGCGTT
CCGACAGGCCTTGGCGGCCCGGGGGCAGCTGTGCACATTCCGAGATAGCC
GTGGGGATGACGGGATGGCGGCTTGCGGGTGA
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