mRNA_H-canaliculatus_M_contigs8922.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8922.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8922.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8922.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Colletotrichum sublineola TaxID=1173701 RepID=A0A066XF67_COLSU)

HSP 1 Score: 122 bits (305), Expect = 9.370e-28
Identity = 87/291 (29.90%), Postives = 129/291 (44.33%), Query Frame = 1 
Query:  190 PSVGAMPLTGWKDTLLCGQKQEIRPLHTMDAQPFMGLVNSNYNHLVAKNATGIKHTPRALFVHYCALCWWYRMLHVQMLDGAPTDPLVVEFISQMQISD-LHVPTFVAQYLSCLGNFAIGGELFHLRMVDFAFGERNDPYVQKGWFETEDPANRVTNETFWLCAQTGFARYHGSWHPNGGRRVLESADT*SPRQPSPTVSKQDCDSDEQHLRVQPWITLSFAQVPTGHVQYAGVGWPKS-I*SLLYGQWNFSASTMDWMSNRLSAFAPLGCAPLNSIS-SVMGSPMQAQYL 1053
            P    +PLTGW +  L   +++I+P+ T+DAQPF  LV   +  +   ++TG KH P  LF +YC   WWYR L +Q  +G          +  +   D   +P+ +AQYL+ +GNF  GGE F  R+       R    V  GWF  +   N  +N     CA  G             +  L+S    +P  P  T    +         +  W         +    Y+ +GW  + +   L  Q+N S ST+ WMS+RLSA   L       ++ S  G+P+QA YL
Sbjct:    3 PVSSTIPLTGWGEIDLSPHRRDIKPIFTVDAQPFNDLVTQVWMSIRLHHSTGGKHIPFGLFRYYCMTMWWYRALFLQKSNGNVLTTEQENCLDIISAGDGYQMPSHIAQYLANMGNFHQGGETFCFRLQPHTLLSRESETVPTGWFTNDTHVNDQSN-----CALDG-----------SNQNTLDSI---APDLPGTTAISTE--------NIVGWSNTHQIYHNSWSSTYSSLGWSGTGLPPDLQTQFNLSTSTLRWMSDRLSAMKDLKVHSSKQLTLSAHGNPLQACYL 266
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8922.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized9.370e-2829.90protein n=1 Tax=Colletotrichum sublineola TaxID=11... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8922contigH-canaliculatus_M_contigs8922:3457..4509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1053
Hectar predicted targeting categoryother localisation
Exons1
Cds size756
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854180.04497-CDS-H-canaliculatus_M_contigs8922:3456..42121696854180.04497-CDS-H-canaliculatus_M_contigs8922:3456..4212Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8922 3457..4212 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854180.0575428-UTR-H-canaliculatus_M_contigs8922:4212..45091696854180.0575428-UTR-H-canaliculatus_M_contigs8922:4212..4509Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8922 4213..4509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8922.1.1prot_H-canaliculatus_M_contigs8922.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8922 3457..4212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8922.1.1

>prot_H-canaliculatus_M_contigs8922.1.1 ID=prot_H-canaliculatus_M_contigs8922.1.1|Name=mRNA_H-canaliculatus_M_contigs8922.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=252bp
MSNLSAATVTPSMSASNVASSTGGGSATTAKSGRKSRRGGGSKGGTPVPT
PSPSVMQTAPPSLPSVGAMPLTGWKDTLLCGQKQEIRPLHTMDAQPFMGL
VNSNYNHLVAKNATGIKHTPRALFVHYCALCWWYRMLHVQMLDGAPTDPL
VVEFISQMQISDLHVPTFVAQYLSCLGNFAIGGELFHLRMVDFAFGERND
PYVQKGWFETEDPANRVTNETFWLCAQTGFARYHGSWHPNGGRRVLESAD
T*
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mRNA from alignment at H-canaliculatus_M_contigs8922:3457..4509+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8922.1.1 ID=mRNA_H-canaliculatus_M_contigs8922.1.1|Name=mRNA_H-canaliculatus_M_contigs8922.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1053bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8922:3457..4509+ (Hapterophycus canaliculatus Oshoro7m male)
ATGTCCAACCTCAGTGCAGCGACGGTCACTCCTTCGATGTCCGCATCGAA
TGTTGCGTCTAGCACCGGAGGGGGCTCAGCCACTACTGCCAAATCAGGAC
GAAAGTCCCGCCGAGGCGGTGGAAGCAAGGGAGGTACTCCGGTTCCTACC
CCGTCCCCCTCTGTGATGCAGACTGCCCCGCCGTCGCTTCCCTCTGTAGG
TGCTATGCCCTTAACGGGGTGGAAGGACACGCTACTTTGTGGTCAAAAGC
AAGAGATCCGTCCGCTCCACACTATGGATGCGCAGCCCTTCATGGGGCTA
GTGAACTCGAACTATAACCACTTAGTGGCAAAGAACGCGACCGGAATCAA
ACACACACCCCGGGCTTTGTTTGTTCACTACTGCGCTCTATGTTGGTGGT
ATCGCATGCTGCATGTGCAGATGCTTGACGGAGCTCCTACTGACCCGTTG
GTAGTTGAGTTCATCTCGCAAATGCAGATTTCAGATCTACATGTTCCCAC
CTTCGTCGCTCAATACCTGTCTTGCCTCGGCAACTTCGCCATTGGCGGTG
AGCTCTTCCATCTCAGGATGGTTGACTTCGCCTTTGGTGAGAGGAACGAC
CCCTACGTCCAAAAGGGGTGGTTTGAGACAGAGGACCCCGCGAATCGCGT
TACGAACGAGACCTTCTGGCTTTGCGCCCAAACTGGTTTCGCCCGCTATC
ACGGCTCTTGGCATCCGAATGGAGGCCGACGGGTTCTGGAATCAGCCGAT
ACCTGATCCCCTAGACAACCTTCGCCCACAGTATCCAAACAGGATTGTGA
CTCCGACGAGCAACATCTCCGGGTTCAACCGTGGATCACTCTCAGCTTTG
CACAAGTCCCAACGGGACATGTACAATACGCTGGGGTGGGTTGGCCAAAA
TCCATCTGATCTTTACTGTATGGCCAATGGAACTTCTCAGCGAGTACCAT
GGACTGGATGTCGAACAGGCTGAGTGCATTCGCCCCTCTGGGCTGTGCAC
CCTTGAATTCGATTTCTAGCGTTATGGGATCTCCGATGCAGGCACAGTAC
CTC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8922:3457..4509+

>mRNA_H-canaliculatus_M_contigs8922.1.1 ID=mRNA_H-canaliculatus_M_contigs8922.1.1|Name=mRNA_H-canaliculatus_M_contigs8922.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=756bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8922:3457..4509+ (Hapterophycus canaliculatus Oshoro7m male)
ATGTCCAACCTCAGTGCAGCGACGGTCACTCCTTCGATGTCCGCATCGAA
TGTTGCGTCTAGCACCGGAGGGGGCTCAGCCACTACTGCCAAATCAGGAC
GAAAGTCCCGCCGAGGCGGTGGAAGCAAGGGAGGTACTCCGGTTCCTACC
CCGTCCCCCTCTGTGATGCAGACTGCCCCGCCGTCGCTTCCCTCTGTAGG
TGCTATGCCCTTAACGGGGTGGAAGGACACGCTACTTTGTGGTCAAAAGC
AAGAGATCCGTCCGCTCCACACTATGGATGCGCAGCCCTTCATGGGGCTA
GTGAACTCGAACTATAACCACTTAGTGGCAAAGAACGCGACCGGAATCAA
ACACACACCCCGGGCTTTGTTTGTTCACTACTGCGCTCTATGTTGGTGGT
ATCGCATGCTGCATGTGCAGATGCTTGACGGAGCTCCTACTGACCCGTTG
GTAGTTGAGTTCATCTCGCAAATGCAGATTTCAGATCTACATGTTCCCAC
CTTCGTCGCTCAATACCTGTCTTGCCTCGGCAACTTCGCCATTGGCGGTG
AGCTCTTCCATCTCAGGATGGTTGACTTCGCCTTTGGTGAGAGGAACGAC
CCCTACGTCCAAAAGGGGTGGTTTGAGACAGAGGACCCCGCGAATCGCGT
TACGAACGAGACCTTCTGGCTTTGCGCCCAAACTGGTTTCGCCCGCTATC
ACGGCTCTTGGCATCCGAATGGAGGCCGACGGGTTCTGGAATCAGCCGAT
ACCTGA
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