mRNA_H-canaliculatus_M_contigs8890.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8890.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8890.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8890.1.1 vs.
Match: Dus (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPV1_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 3.820e-52
Identity = 85/93 (91.40%), Postives = 88/93 (94.62%), Query Frame = 1
Query:    1 RSIGSPTRIVAPMVDQSELAFRRLCRRYGSNLCYTPMYNSKCFASS---RQSNFDPHPEDRPLIVQFCGHDPTLLLASAKFVEKDCDAVDLNL 270
            RSIGSPTRIVAPMVDQSELAFRRLCRRYGSNLCYTPMYNSKCFA S   R+SNFDPHPEDRPLIVQFCGHDP LLLASAKFVEK+CDA+DLNL
Sbjct:   81 RSIGSPTRIVAPMVDQSELAFRRLCRRYGSNLCYTPMYNSKCFAVSSAYRKSNFDPHPEDRPLIVQFCGHDPALLLASAKFVEKECDAIDLNL 173          
BLAST of mRNA_H-canaliculatus_M_contigs8890.1.1 vs.
Match: tRNA-dihydrouridine (synthase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL89_9STRA)

HSP 1 Score: 129 bits (324), Expect = 3.780e-34
Identity = 62/92 (67.39%), Postives = 74/92 (80.43%), Query Frame = 1
Query:    4 SIGSPTRIVAPMVDQSELAFRRLCRRYGSNLCYTPMYNSKCFASS---RQSNFDPHPEDRPLIVQFCGHDPTLLLASAKFVEKDCDAVDLNL 270
            +IG+P RIVAPMVDQSELAFR LCRR+G+ LCYTPM++S+ FA S   R+  F+ H  DRPLIVQFCG+DP  +LA+AK VE  CDAVDLNL
Sbjct:   11 AIGAPKRIVAPMVDQSELAFRMLCRRHGAELCYTPMFHSRLFAESPAYREKMFEQHVHDRPLIVQFCGNDPQTMLAAAKLVEGHCDAVDLNL 102          
BLAST of mRNA_H-canaliculatus_M_contigs8890.1.1 vs.
Match: Dus (domain-containing protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D0W1_EMIHU)

HSP 1 Score: 127 bits (319), Expect = 3.980e-34
Identity = 61/92 (66.30%), Postives = 73/92 (79.35%), Query Frame = 1
Query:    1 RSIGSPTRIVAPMVDQSELAFRRLCRRYGSNLCYTPMYNSKCFASS---RQSNFDPHPEDRPLIVQFCGHDPTLLLASAKFVEKDCDAVDLN 267
            RSIGSPTR++APMV+QSELAFR L RR+G+ LCYTPM ++  FAS    RQ NFDPHP DRPL+VQFCG  P  LLA+A+ VE  CDAV++N
Sbjct:    3 RSIGSPTRVLAPMVNQSELAFRLLARRHGAQLCYTPMLHAANFASDEVYRQDNFDPHPSDRPLVVQFCGDVPATLLAAARHVEARCDAVEIN 94          
BLAST of mRNA_H-canaliculatus_M_contigs8890.1.1 vs.
Match: tRNA-dihydrouridine (synthase n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G6H1_9STRA)

HSP 1 Score: 128 bits (321), Expect = 9.220e-34
Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = 1
Query:    1 RSIGSPTRIVAPMVDQSELAFRRLCRRYGSNLCYTPMYNSKCFASS---RQSNFDPHPEDRPLIVQFCGHDPTLLLASAKFVEKDCDAVDLNL 270
            RSIGSP RIVAPMVDQSELAFR LCR +G+ LCYTPM++S+ FA S   R   F+ H  DRPLIVQFCG+DP  ++ +AK+VE  CDAVD+NL
Sbjct:   11 RSIGSPQRIVAPMVDQSELAFRMLCREHGAQLCYTPMFHSRLFAESQEYRSRMFEQHVRDRPLIVQFCGNDPETMVTAAKYVEGHCDAVDINL 103          
BLAST of mRNA_H-canaliculatus_M_contigs8890.1.1 vs.
Match: DUS1 (protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WLW8_SYMMI)

HSP 1 Score: 124 bits (312), Expect = 1.110e-33
Identity = 59/92 (64.13%), Postives = 73/92 (79.35%), Query Frame = 1
Query:    4 SIGSPTRIVAPMVDQSELAFRRLCRRYGSNLCYTPMYNSKCFASS---RQSNFDPHPEDRPLIVQFCGHDPTLLLASAKFVEKDCDAVDLNL 270
            SIGSP+RIVAPMVD S LA+R L R+YG+ L YT M+++ CF  S   R+SNF   PEDRPL+VQFCG+DP +LL +AK+VE DCDAVD+NL
Sbjct:    9 SIGSPSRIVAPMVDHSGLAYRMLTRKYGAELVYTQMFSAHCFVESAEYRKSNFQTCPEDRPLVVQFCGNDPQMLLRAAKYVENDCDAVDINL 100          
BLAST of mRNA_H-canaliculatus_M_contigs8890.1.1 vs.
Match: tRNA-dihydrouridine (synthase n=25 Tax=Phytophthora TaxID=4783 RepID=D0NNQ3_PHYIT)

HSP 1 Score: 126 bits (316), Expect = 6.510e-33
Identity = 61/93 (65.59%), Postives = 74/93 (79.57%), Query Frame = 1
Query:    1 RSIGSPTRIVAPMVDQSELAFRRLCRRYGSNLCYTPMYNSKCFASS---RQSNFDPHPEDRPLIVQFCGHDPTLLLASAKFVEKDCDAVDLNL 270
            R+IGSP RIVAPMVDQSELAFR LCR+ G++ CYTPM +S+ FA S   R+  F+ H +DRPL+VQFCG+DP  +LA+AK VE  CDAVDLNL
Sbjct:   19 RAIGSPKRIVAPMVDQSELAFRMLCRKLGADCCYTPMLHSRLFAESAEYREKMFEHHIQDRPLVVQFCGNDPKTVLAAAKMVEGHCDAVDLNL 111          
BLAST of mRNA_H-canaliculatus_M_contigs8890.1.1 vs.
Match: tRNA-dihydrouridine (synthase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGW3_BRELC)

HSP 1 Score: 125 bits (315), Expect = 7.430e-33
Identity = 59/93 (63.44%), Postives = 74/93 (79.57%), Query Frame = 1
Query:    1 RSIGSPTRIVAPMVDQSELAFRRLCRRYGSNLCYTPMYNSKCFASS---RQSNFDPHPEDRPLIVQFCGHDPTLLLASAKFVEKDCDAVDLNL 270
            R+IGSP RIVAPMVDQSELAFR LCR++G++ CYTPM +S+ FA +   R+  F+ H +DRPL+VQFCG+DP  +L +AK VE  CDAVDLNL
Sbjct:   11 RAIGSPKRIVAPMVDQSELAFRMLCRKFGADCCYTPMLHSRLFAENAEYREKMFERHMQDRPLVVQFCGNDPKTVLQAAKMVENHCDAVDLNL 103          
BLAST of mRNA_H-canaliculatus_M_contigs8890.1.1 vs.
Match: tRNA-dihydrouridine (synthase n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WN09_9STRA)

HSP 1 Score: 125 bits (315), Expect = 7.700e-33
Identity = 60/93 (64.52%), Postives = 74/93 (79.57%), Query Frame = 1
Query:    1 RSIGSPTRIVAPMVDQSELAFRRLCRRYGSNLCYTPMYNSKCFASSRQSN---FDPHPEDRPLIVQFCGHDPTLLLASAKFVEKDCDAVDLNL 270
            RSIGSP RIVAPMVDQSELAFR LCR +G+ LCYTPM++S+ FA S++     F+ H  DRPLIVQFCG+D   ++A+AK+VE  CDAVD+NL
Sbjct:   14 RSIGSPQRIVAPMVDQSELAFRMLCRHHGAQLCYTPMFHSRLFAESQEYRTRMFEQHVRDRPLIVQFCGNDGDTMVAAAKYVEGHCDAVDINL 106          
BLAST of mRNA_H-canaliculatus_M_contigs8890.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CA77_PYTOL)

HSP 1 Score: 125 bits (313), Expect = 1.790e-32
Identity = 61/93 (65.59%), Postives = 74/93 (79.57%), Query Frame = 1
Query:    1 RSIGSPTRIVAPMVDQSELAFRRLCRRYGSNLCYTPMYNSKCFASS---RQSNFDPHPEDRPLIVQFCGHDPTLLLASAKFVEKDCDAVDLNL 270
            R+IGSP R+VAPMVDQSELAFR L RR+G+ LCYTPM++S+ FA S   R   F+ H +DRPLIVQFCG+DP  +LA+A+ VE  CDAVDLNL
Sbjct:   31 RAIGSPQRVVAPMVDQSELAFRMLTRRHGAELCYTPMFHSRLFAESAEYRAKMFEKHIKDRPLIVQFCGNDPQTVLAAARHVEGHCDAVDLNL 123          
BLAST of mRNA_H-canaliculatus_M_contigs8890.1.1 vs.
Match: Chromo (domain-containing protein n=5 Tax=Albugo candida TaxID=65357 RepID=A0A024G769_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.140e-32
Identity = 61/93 (65.59%), Postives = 73/93 (78.49%), Query Frame = 1
Query:    1 RSIGSPTRIVAPMVDQSELAFRRLCRRYGSNLCYTPMYNSKCFASS---RQSNFDPHPEDRPLIVQFCGHDPTLLLASAKFVEKDCDAVDLNL 270
            RSIGSP RIVAPMVDQSELAFR LCR +G+ LCYTPM++S+ FA S   R   F+ H  DRPLIVQFCG+DP  ++ +AK+VE  CDAVD+NL
Sbjct:   11 RSIGSPQRIVAPMVDQSELAFRMLCREHGAQLCYTPMFHSRLFAESQEYRSRMFEQHVRDRPLIVQFCGNDPETMVTAAKYVEGHCDAVDINL 103          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8890.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Dus3.820e-5291.40domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
tRNA-dihydrouridine3.780e-3467.39synthase n=1 Tax=Pythium brassicum TaxID=1485010 R... [more]
Dus3.980e-3466.30domain-containing protein (Fragment) n=2 Tax=Emili... [more]
tRNA-dihydrouridine9.220e-3465.59synthase n=2 Tax=Albugo candida TaxID=65357 RepID=... [more]
DUS11.110e-3364.13protein (Fragment) n=1 Tax=Symbiodinium microadria... [more]
tRNA-dihydrouridine6.510e-3365.59synthase n=25 Tax=Phytophthora TaxID=4783 RepID=D0... [more]
tRNA-dihydrouridine7.430e-3363.44synthase n=1 Tax=Bremia lactucae TaxID=4779 RepID=... [more]
tRNA-dihydrouridine7.700e-3364.52synthase n=1 Tax=Albugo laibachii Nc14 TaxID=89038... [more]
Uncharacterized1.790e-3265.59protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Chromo2.140e-3265.59domain-containing protein n=5 Tax=Albugo candida T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8890contigH-canaliculatus_M_contigs8890:633..1344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LPV1
PFAMsDus
Model size282
Max annot lvl2759|Eukaryota
KEGG koko:K05542,ko:K05545
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.26e-53
EggNOG OGsCOG0042@1|root,KOG2335@2759|Eukaryota
EC1.3.1.88,1.3.1.90
DescriptiontRNA dihydrouridine synthase activity
Cds size282
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854178.5200865-CDS-H-canaliculatus_M_contigs8890:632..7701696854178.5200865-CDS-H-canaliculatus_M_contigs8890:632..770Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8890 633..770 -
1696854178.5365024-CDS-H-canaliculatus_M_contigs8890:1200..13441696854178.5365024-CDS-H-canaliculatus_M_contigs8890:1200..1344Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8890 1201..1344 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8890.1.1prot_H-canaliculatus_M_contigs8890.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8890 633..1344 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8890.1.1

>prot_H-canaliculatus_M_contigs8890.1.1 ID=prot_H-canaliculatus_M_contigs8890.1.1|Name=mRNA_H-canaliculatus_M_contigs8890.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=94bp
RSIGSPTRIVAPMVDQSELAFRRLCRRYGSNLCYTPMYNSKCFASSRQSN
FDPHPEDRPLIVQFCGHDPTLLLASAKFVEKDCDAVDLNLVRM*
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mRNA from alignment at H-canaliculatus_M_contigs8890:633..1344-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8890.1.1 ID=mRNA_H-canaliculatus_M_contigs8890.1.1|Name=mRNA_H-canaliculatus_M_contigs8890.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=712bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8890:633..1344- (Hapterophycus canaliculatus Oshoro7m male)
AGGTCCATAGGCTCGCCAACTCGAATCGTCGCTCCCATGGTGGACCAATC GGAGCTCGCGTTCCGACGGCTGTGCAGGCGCTATGGGTCGAACCTCTGCT ACACGCCCATGTACAACAGCAAGTGCTTCGCATCCAGCAGGCAAGTTCAA TTAGGTACAGGACCTTCGGATGTCTGGTAGATTGCATGAGTGATGAATGT GGATCGGGAAGACAGTAGCGATGATACCCCGCCGACGTACGCCAGAAAAC ATACTTGAATCGAGCGCTTTTTTACTTCTTGCCAGGATGATCCTCGAATC AGAAACAAGACAAAAATAGAAAACCGGACGGCGTTTAGCACCGAATGGAC CATGACGGCACCCCACCCCCCCCTACCGCGCGACCTTCTTATCCTGTGGG CGGGGAGTCAATTCGATCATAATTCCTGTGGGCTGCGGGTCGATTTCTGA GTAACTGCTGCCTCACGCCCAAGCACAAAGAAGACGGGTGGATCCATTCC ATCAGCATGCTCGTGTCCACGAGATTAAAACTTGGCCTACCGTTGCACGC TCGCCGCTCAGATCATACCGCAAGAGCAACTTCGACCCGCATCCGGAGGA CCGGCCGCTGATCGTCCAGTTCTGCGGCCACGACCCGACCTTGTTGCTAG CGTCCGCTAAGTTCGTGGAGAAGGACTGCGATGCGGTGGACTTGAACTTG GTGAGAATGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8890:633..1344-

>mRNA_H-canaliculatus_M_contigs8890.1.1 ID=mRNA_H-canaliculatus_M_contigs8890.1.1|Name=mRNA_H-canaliculatus_M_contigs8890.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=282bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8890:633..1344- (Hapterophycus canaliculatus Oshoro7m male)
AGGTCCATAGGCTCGCCAACTCGAATCGTCGCTCCCATGGTGGACCAATC
GGAGCTCGCGTTCCGACGGCTGTGCAGGCGCTATGGGTCGAACCTCTGCT
ACACGCCCATGTACAACAGCAAGTGCTTCGCATCCAGCAGGCAAAGCAAC
TTCGACCCGCATCCGGAGGACCGGCCGCTGATCGTCCAGTTCTGCGGCCA
CGACCCGACCTTGTTGCTAGCGTCCGCTAAGTTCGTGGAGAAGGACTGCG
ATGCGGTGGACTTGAACTTGGTGAGAATGTGA
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