mRNA_H-canaliculatus_M_contigs8885.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8885.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8885.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8885.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTX1_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 1.570e-37
Identity = 83/122 (68.03%), Postives = 94/122 (77.05%), Query Frame = 1 
Query:   10 DLSMSKRKAAKRALLQPPSKRK-SGDSATATKSSRTSVSKKARDKSGRRKTGLLDQARRELRGKSRVAQNVSLMSYKSRGRGEEVGPDVDGGAGRAGGGRASKSRKAVEHLLQLDARNARGK 372
            DLS SK+KAAKRALLQ PSKRK SG ++ AT SSR+   K AR+K+GRR  GLLD+ARRELRGKS VA+NVSL+SY SRG G   G   D GA + GGG ASKSRKAVEHLL LDAR A G+
Sbjct:   28 DLSTSKKKAAKRALLQAPSKRKGSGSTSVATSSSRSVTKKSARNKAGRRTMGLLDKARRELRGKSLVARNVSLLSYSSRGEGRAAGAGADSGAAKVGGGVASKSRKAVEHLLLLDARKAAGR 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8885.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.570e-3768.03protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTX1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8885contigH-canaliculatus_M_contigs8885:519..1768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size868
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_004010.1
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854178.4239914-UTR-H-canaliculatus_M_contigs8885:518..5361696854178.4239914-UTR-H-canaliculatus_M_contigs8885:518..536Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8885 519..536 +
1696854178.4824016-UTR-H-canaliculatus_M_contigs8885:1275..17681696854178.4824016-UTR-H-canaliculatus_M_contigs8885:1275..1768Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8885 1276..1768 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854178.4384289-CDS-H-canaliculatus_M_contigs8885:536..6281696854178.4384289-CDS-H-canaliculatus_M_contigs8885:536..628Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8885 537..628 +
1696854178.4615343-CDS-H-canaliculatus_M_contigs8885:1010..12751696854178.4615343-CDS-H-canaliculatus_M_contigs8885:1010..1275Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8885 1011..1275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8885.1.1prot_H-canaliculatus_M_contigs8885.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8885 537..1275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8885.1.1

>prot_H-canaliculatus_M_contigs8885.1.1 ID=prot_H-canaliculatus_M_contigs8885.1.1|Name=mRNA_H-canaliculatus_M_contigs8885.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=119bp
MSKRKAAKRALLQPPSKRKSGDSATATKSSRTSVSKKARDKSGRRKTGLL
DQARRELRGKSRVAQNVSLMSYKSRGRGEEVGPDVDGGAGRAGGGRASKS
RKAVEHLLQLDARNARGK*
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mRNA from alignment at H-canaliculatus_M_contigs8885:519..1768+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8885.1.1 ID=mRNA_H-canaliculatus_M_contigs8885.1.1|Name=mRNA_H-canaliculatus_M_contigs8885.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1250bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8885:519..1768+ (Hapterophycus canaliculatus Oshoro7m male)
CAACAGAAGGACCTCTCTATGAGCAAGAGAAAGGCGGCCAAACGGGCTCT
TCTTCAGCCACCATCGAAGCGAAAAAGCGGCGACAGCGCAACGGCGACCA
AGTCGAGCAGGTGCGCTCCGGCATTTTTTTCTATCTTCCGCTATCACAGG
TTCGAAACAGTTGTTATGTCTCTTACACGCAACCAATAGCAGCGGCAGCA
ACACCAGCAGCAGCAACAACAGCATCAGCAGCACGGGGAGTGATGTGTCA
ATTGACGTTATTCACCTCTTGTCGCTCATCCGGGAAGTCAGGGAACGACA
GTATGTTTTTTTTCTTCAACCCACCCATGCCTCGTCTTCTTTTGCGATAT
TCATCTGCGCTGTGCGCTCGGCGTCTGGGCAGTAGGCGTGTTTCTCTCGG
CCGCAGGCGTAGTCGCGGACGTACTTGCAACGACCGTGCACGCTTTCCGT
CGCCTGCCGTGTGCGTTCTACCTACCCGCAACGTGTCATCAGGACGAGCG
TTTCCAAGAAGGCGAGAGATAAATCGGGGCGACGTAAGACGGGCCTCCTG
GACCAAGCGCGACGTGAACTGCGCGGCAAATCGCGGGTGGCGCAAAACGT
CAGTTTGATGTCGTACAAGTCTCGGGGAAGGGGGGAGGAGGTTGGGCCAG
ATGTGGACGGCGGAGCCGGAAGGGCTGGCGGTGGACGTGCCAGCAAGTCA
CGAAAAGCTGTTGAGCATCTGCTGCAGCTGGACGCAAGAAATGCGCGAGG
GAAATAGAGAATGAAAAATGTCGGTTGATTGGATGTGGAGCCGAACTTGT
CGTAAGATGCGTTTGGCTTTTCGTCACCCTTTCAGGATTGCCCATGTTTC
GTTTTCACCTCTTCTTTAGAGGTGGCCATTTACGTTTACGGAGCTTTTCG
CTGAGTTACTCTCCAGCAGCAGTAGCGGCAGCACCAAGCGACTCGCCATC
CTTGAGCGACGCATGTCGCCGATATACAACGGCTGCCCCTACGAAGTTAG
CTGGTGGACTTTACTCGCGGATTGCCGATGTCATGGGACCTCGTTTCATT
GTGCGCGCCAGGCTCGCGAAAAAGTTGTGCCTCACGGAAGCTCGTCTGCC
CTGCAAACCACGCGCAGTCTACGTCGGTCAACACAATCAGTGTCCAAGGT
CTCGACTTCCGTGCTTGGCATCACTAGGACTTCCCACTATTCGTTCAGCC
GCTCCGCGGTTACTCGCTCGTGCTAGTAATCGAGCCCGCTCTTCATTGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8885:519..1768+

>mRNA_H-canaliculatus_M_contigs8885.1.1 ID=mRNA_H-canaliculatus_M_contigs8885.1.1|Name=mRNA_H-canaliculatus_M_contigs8885.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=357bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8885:519..1768+ (Hapterophycus canaliculatus Oshoro7m male)
ATGAGCAAGAGAAAGGCGGCCAAACGGGCTCTTCTTCAGCCACCATCGAA
GCGAAAAAGCGGCGACAGCGCAACGGCGACCAAGTCGAGCAGGACGAGCG
TTTCCAAGAAGGCGAGAGATAAATCGGGGCGACGTAAGACGGGCCTCCTG
GACCAAGCGCGACGTGAACTGCGCGGCAAATCGCGGGTGGCGCAAAACGT
CAGTTTGATGTCGTACAAGTCTCGGGGAAGGGGGGAGGAGGTTGGGCCAG
ATGTGGACGGCGGAGCCGGAAGGGCTGGCGGTGGACGTGCCAGCAAGTCA
CGAAAAGCTGTTGAGCATCTGCTGCAGCTGGACGCAAGAAATGCGCGAGG
GAAATAG
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