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Homology
BLAST of mRNA_H-canaliculatus_M_contigs8861.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R6_9PHAE) HSP 1 Score: 370 bits (950), Expect = 7.680e-120 Identity = 199/300 (66.33%), Postives = 232/300 (77.33%), Query Frame = 1
Query: 112 TKVIEEWKAAGRPVPLCLVMYEPVVTLLSMNVVLAAMGADDSKHLRWLNDLESYLKG-ESGVSKRPFNLYASMSLFGMIYPMCFEYAEMFRFYHSVYRIVYHPQVLLPIRRGLMFQTASATSRVQAKNIIITQGIEIMSLMCQAYQSITVPTPGSKKPKQFFDQLMSIVRSQPSRASCAAVYQTARLLHLWGRAREVLQLWGALPSFDACEDARRSSCLSDRRLTDAKLDGAAT-----------FTSLSSMSSSSTSMQRESSSAKSS---TDGDTD---GIAVDVYESILLFCKADAE 957
T+ EWKAAGRPVPLCLVMYEPVVTL+S+N++LAA+GADDS+HLRWLN+LESYLK +SGVSK+PFNLYASMSLFGM+YPMCFEYAEMFRFYHSVY +VYHPQVLLPIRRGLMFQ +SATSRVQAKN++ITQG+E+MSLMCQ YQSIT P SKKPKQ+F QLMSIV+SQP+ A+CAAVYQ ARLL LW RARE LQLW ALPSF++CE+ARR++ + +DA D AA FT+L S+ S + S S S GD D + VD+Y ILLFCK D E
Sbjct: 15 TQAKHEWKAAGRPVPLCLVMYEPVVTLMSINIILAAVGADDSRHLRWLNELESYLKSNDSGVSKKPFNLYASMSLFGMLYPMCFEYAEMFRFYHSVYHVVYHPQVLLPIRRGLMFQASSATSRVQAKNVVITQGVEVMSLMCQVYQSITSPVTNSKKPKQYFSQLMSIVQSQPTPAACAAVYQAARLLRLWDRARESLQLWDALPSFESCEEARRNA---NAGASDATFDVAALYPPIDKTADTIFTALGPRELSTDSRMKRSFSTDSMGRLDAGDDDLAEDVPVDIYGCILLFCKGDTE 311
BLAST of mRNA_H-canaliculatus_M_contigs8861.1.1 vs.
Match: DEP (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG1_ECTSI) HSP 1 Score: 231 bits (589), Expect = 5.200e-67 Identity = 112/141 (79.43%), Postives = 128/141 (90.78%), Query Frame = 1
Query: 1 VLFESIPAKQVVLRIEPAAILAVVLTQRGHFRQARAYTKVIEEWKAAGRPVPLCLVMYEPVVTLLSMNVVLAAMGADDSKHLRWLNDLESYLKG-ESGVSKRPFNLYASMSLFGMIYPMCFEYAEMFRFYHSVYRIVYHPQ 420
VLF+SIP+ +VVLRIEPAAILA +LTQRG F+QAR YT V+ EWKAAGRPVPLCLVMYEPVVTL+S+N++LAA+GADDS+HLRWLN+LESYLK +SGVSK+PFNLYASMSLFGM+YPMCFEYAEMFRFYHSVY PQ
Sbjct: 425 VLFDSIPSAKVVLRIEPAAILAAILTQRGQFKQARVYTNVVAEWKAAGRPVPLCLVMYEPVVTLMSINIILAAVGADDSRHLRWLNELESYLKSNDSGVSKKPFNLYASMSLFGMLYPMCFEYAEMFRFYHSVYXXXXXPQ 565
BLAST of mRNA_H-canaliculatus_M_contigs8861.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7V5_9STRA) HSP 1 Score: 176 bits (447), Expect = 1.040e-45 Identity = 112/295 (37.97%), Postives = 153/295 (51.86%), Query Frame = 1
Query: 103 RAYTKVIEEWKAAGRPVPLCLVMYEPVVTLLSMNVVLAAMGADDSKHLRWLND--------------------------------------LESYLKGESGVSKRPFNLYASMSLFGMIYPMCFEYAEMFRFYHSVYRIVYHPQ----------------------------------------VLLPIRRGLMFQTASATSRVQAKNIIITQGIEIMSLMCQAYQSITVP-TPGS----KKPKQF--FD-----QLMSIVRSQPSRASCAAVYQTARLLHLWGRAREVLQLWGA 717
R YT ++ W+ A RP PLCL MYEPV+TL++ NVVLAA+ ADD+ H W+N ++ YLK +S S RPF+LY SMSLFG+ YP+C E AE RF+H+VYR+VY+PQ V+LP+RRGL +Q +A SR+ A+N ++TQG E+MSLMC+ +++ T G+ KK +Q +D +LM+ +R+ PS CAAVYQ AR+L WG A E+L LW A
Sbjct: 851 RRYTAELKRWENARRPSPLCLCMYEPVITLMTSNVVLAALQADDTSHQNWMNQXXXXXXXXXXXXVLRCSETDVILTGMRAAAISTITGGIVQRYLK-DSAASHRPFHLYTSMSLFGITYPVCVEVAETVRFFHAVYRVVYNPQNTVICFVDMHSLAVCICSIAELLNPHLPDQTASVLTLRRKVMLPLRRGLFYQAPTAASRILAENPVVTQGFEVMSLMCKIMETVQKEKTRGNMVQLKKARQSAAYDACALCELMTGLRACPSVPLCAAVYQAARVLGDWGVAHEILHLWSA 1144
BLAST of mRNA_H-canaliculatus_M_contigs8861.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQG2_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 2.160e-15 Identity = 59/135 (43.70%), Postives = 79/135 (58.52%), Query Frame = 1
Query: 604 MSIVRSQPSRASCAAVYQTARLLHLWGRAREVLQLWGALPSFDACEDARRSSCLSDRRLTDAKLDGAATFTSLSSMSSSSTSMQR----------------ESSSAKSSTDGD-TDGIAVDVYESILLFCKADAE 957
MSIVRSQP+ A+CAAVYQ ARLL LW RARE LQLW ALP+F++ E+ARR++ + +DA D AA + + + + +S R +S + DGD + + VD+Y ILLFCK D E
Sbjct: 1 MSIVRSQPTPAACAAVYQAARLLRLWDRARESLQLWDALPTFESSEEARRNA---NAGASDATFDVAAVYPPIEITADTISSALRPQAYPTDSRMTRSISTDSRGHLDADDGDLAEDVPVDIYGCILLFCKGDTE 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8861.1.1 vs.
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 4
| Match Name | E-value | Identity | Description | |
| Uncharacterized | 7.680e-120 | 66.33 | protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... | [more] |
| DEP | 5.200e-67 | 79.43 | domain-containing protein n=1 Tax=Ectocarpus silic... | [more] |
| Uncharacterized | 1.040e-45 | 37.97 | protein n=1 Tax=Tribonema minus TaxID=303371 RepID... | [more] |
| Uncharacterized | 2.160e-15 | 43.70 | protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 0 |
| Model size | 987 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Ec32 ortholog description | DEP domain |
| Ec32 ortholog | Ec-10_005520.1 |
| Cds size | 987 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1696854177.2284043-CDS-H-canaliculatus_M_contigs8861:289..415 | 1696854177.2284043-CDS-H-canaliculatus_M_contigs8861:289..415 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs8861 290..415 + |
| 1696854177.2426863-CDS-H-canaliculatus_M_contigs8861:742..885 | 1696854177.2426863-CDS-H-canaliculatus_M_contigs8861:742..885 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs8861 743..885 + |
| 1696854177.2564147-CDS-H-canaliculatus_M_contigs8861:2548..2699 | 1696854177.2564147-CDS-H-canaliculatus_M_contigs8861:2548..2699 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs8861 2549..2699 + |
| 1696854177.2677622-CDS-H-canaliculatus_M_contigs8861:3675..3834 | 1696854177.2677622-CDS-H-canaliculatus_M_contigs8861:3675..3834 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs8861 3676..3834 + |
| 1696854177.2809272-CDS-H-canaliculatus_M_contigs8861:4411..4819 | 1696854177.2809272-CDS-H-canaliculatus_M_contigs8861:4411..4819 | Hapterophycus canaliculatus Oshoro7m male | CDS | H-canaliculatus_M_contigs8861 4412..4819 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs8861.1.1 >prot_H-canaliculatus_M_contigs8861.1.1 ID=prot_H-canaliculatus_M_contigs8861.1.1|Name=mRNA_H-canaliculatus_M_contigs8861.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=329bp
VLFESIPAKQVVLRIEPAAILAVVLTQRGHFRQARAYTKVIEEWKAAGRP VPLCLVMYEPVVTLLSMNVVLAAMGADDSKHLRWLNDLESYLKGESGVSK RPFNLYASMSLFGMIYPMCFEYAEMFRFYHSVYRIVYHPQVLLPIRRGLM FQTASATSRVQAKNIIITQGIEIMSLMCQAYQSITVPTPGSKKPKQFFDQ LMSIVRSQPSRASCAAVYQTARLLHLWGRAREVLQLWGALPSFDACEDAR RSSCLSDRRLTDAKLDGAATFTSLSSMSSSSTSMQRESSSAKSSTDGDTD GIAVDVYESILLFCKADAEARSSAAYFD* back to topmRNA from alignment at H-canaliculatus_M_contigs8861:290..4819+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_M_contigs8861.1.1 ID=mRNA_H-canaliculatus_M_contigs8861.1.1|Name=mRNA_H-canaliculatus_M_contigs8861.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=4530bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8861:290..4819+ (Hapterophycus canaliculatus Oshoro7m male) GTTTTATTCGAGTCTATCCCGGCGAAGCAGGTTGTTTTGCGAATAGAACC
AGCAGCGATCCTCGCGGTGGTCTTGACGCAAAGGGGCCACTTCAGGCAGG
CCAGGGCATACACCAAAGTGATTGAGGTACGTCAATGTAGTTCGCAGCAT
GCCTTCATCTTGATCAATGAAGCCTCTACCCCACAGCGTCCAACACCATC
GCTGTGCGTGTGCGTCGAGTGGACGGTGAGATATCTTGATATTTCGTTGC
GTCTTACTGAATGAATGTTTCCCTCCGAAAGGTTCAGCCAAGGACAATTA
AATGATGCACGTTTACTCCAAAACCATCTGGCGTGTTCACGCATGAGGCG
GCGGATCAGGAAGACGTGAGACCTGTCCACAGGTGAAGGACAAAACAATT
TTGGGGTGCTCATTCCCACGTGGAGCACCGTTTCGTATTACTATCCCGCG
CAGGAGTGGAAGGCCGCAGGGCGCCCGGTGCCTCTGTGCCTCGTGATGTA
TGAACCTGTTGTGACGCTCTTGTCTATGAACGTGGTCTTAGCTGCGATGG
GTGCGGACGACTCCAAGCATCTGAGATGGCTGAACGACCTTGAGAGGTAA
GAACCAGCTACCCGCACCATCCTCTTGAATCGGTCCAGCTTTGCTGCAAT
CTCACCTGTTGGCCCTTCCTTGTTGTTATGACCTGATTTGATGTGCATAA
GGTAGACTCCATCGAGTCAAACGCCGTTTGGGGAGTGTGTCGACGTACTA
ACCGCCGTGACCGAAGAACTCGACGAAAAATCGCGGCCCAAGGTGCCTAC
AACTTCATGCGGAAGCAATGCGCTAGGTCGATGCTGTGGTTCAATCTCAC
TCGCGCCTCTACAGCGGTAGCGCTTCATTATAGCGCCACCGACGAAGAAC
ATCAATATTTTTCGGAGAGTCACCACTCACTGTCCACCCTGGACCGAGCG
CCAGTCATCATTCCATCGTGCACGTTCCAGCCAGGGATTTACCTTTGAAA
TTGCTAGATTTTGCTGACGAGCACCCAGTCGGACACTAAAGAAACGAGCT
TCACCTTTCAGGTTGATCTCGGGTTTGTTCACACAAACGCAATGTTTCCC
TTATATTCTGTCTCCGGCATAGGTTCGCACATGTCTCCACGCAAGCAAGG
GTAGCCCCTGCCTGAAGAGGCACCTACTGCAAACACATTCTGTTTAACAT
TTATCCGACGGGTTGTCGACCCCCAAAAGAGATGACCCCTAGCAATTTCA
GTGGAAAGCGTTGTACCGTAGAGCTATCGACCGTGATAAATTCTGGATTT
CAGTCTCACAGGTGATCGCAGCCAAATCCTTCCTCTCTGGAGTCTTGCTT
TCATTTAGAACACCGAACTGGCAATCTGCTCTAATCGTCCAGCATCGCAT
TTTAGCTGTCAAGTGCCCAAGCTTCCACCTACCTGCTCAAACATATACCT
AGATTTAACTTTTAAGTATGCAATTTGTCTCAATGAGAATCCCGATTTTC
ATCGTCTTTATTATGTGTTGTAGTATTCGTGTGGTTGTTTTGTGCCATGG
CGTGTGATGACCAAAGTTTCCTGCCGCTCAGGCCACTTCAAGAAAAGGAA
CTTCCGAGGTTCTAGGCCTAAGATGGGGATTTCATCGGGGGAATACATTT
GCCCGCGACACTGTGTCTGTGTGTCTGATCTTCAGCAAGAATCTAGACCC
TGCTCGGGCGGGCTTTCCGTGCCGACTGCAGCGAAAGCCCATCCCCATCC
TTTTGAAAGGTTTGCAGTCCACCATATATAGGGGAAGCGATACTTGTTAT
ACCACGCTCTGCCCATCGAATGCTCAACGACTCGACGTGCCGCGAGCCAC
CAGTCCGGTTGAGAGCGCTGGAACAAAGTGGCATTTTTTGTACCATGTTC
AAGGTTGCCTGGCAACACTCGTGTTTGGTGCTGCATGCGCACGGCTTCCA
CGCACCGTTTCTATCTGCTGCCGAGGTCGCGACTCATCGCCAGGTGGATC
CACCGTTCTCAGCTCGACTCTCAAGGTATCGCTAGGCACTGCTGGCGCCA
AGATCTCGCGACATGCAAGCCAGCTGAACCCTTTTTCGACTTCATCGTTG
TGTCGCTTTATTATGTGCCCTCTTCGGGATGCTCTCTTGTTCGCCCGTCG
AGGCCTCAAGAGACTGCCTATCCCTCCGGCGCTCGTCGAAATTTCGCCTG
ACCATAACTTGTATCTTGTATCGATCCCCTTCCGTGTGTTCTGGCTGCAT
ACGATCCAGTTACCTCAAAGGCGAATCCGGGGTGTCCAAGAGGCCGTTCA
ACCTGTACGCTTCCATGTCCCTCTTCGGCATGATCTACCCGATGTGCTTC
GAGTATGCCGAGATGTTTCGATTTTATCACAGCGTCTACCGCATCGTCTA
CCATCCTCAGGTCAACACGTGGATATCTGCATGGTTTAGCGTACGGGTGG
ACGGGAGATGCGAGTATAGCTTCCCCCTGTAATGCTGTAATGTGCCGGCA
GACGATGTTCTAGCTTTCAGGCTTGTCGCGTGGTCGTGCTGCATGCCTCT
CCATCTCTACGTCCCTGTCAGGCTCAAGCATACCAGACAGAGCTGGTGTA
CAACGCTAAGACTGTGAATTATCCTGCCCGACTTACGTCATCCCACTACA
AGCACCATACTTGACAGCTTGCGATCCTGAAGCACGCTCGAGATTCCTCC
CTCCGACATTCAATAGCACATATCTCAACGCACACACTCCAACACACACG
CAAAGGCTGCCGGTTTCTATTTGCGCCCATGCTCTACAAAAACCAGGAGC
CGAGAGTGGAGGAAGTGTTCGATCATAATATCGTCCCTGGCTTGTCGCAG
ATTTTTTATTGCAAGCTCGGTTTACAGGTCCTCGCAACCATTTGGGCGTA
GAGTGTTTCCCTCGCCATTTCGAGTTTTCACTACAGCAGTGCACACTGCG
CCTACTGCTTCGCCGAGCAATGATACTATGGTTCGATGCAATCGCTTCTG
TCACGAAACATCTCTCTGCGAGCGATTTTCACGGTGGAGTTCGTAGCCTT
CCGCACTAGAACAGACGACAACCCCGCGTTCAAACAATGTTGAACATGGC
ACCGGCAGAGACACTCAAAGCTACATTCCAGGCGTACACATTCAGCCGTG
ATGGTGAACTACGAAACCGAGGTCGAATTTCATCTCCCACAACACCATGC
TGGGTCCTCCGTCTATTTTTTGTCTCGTCTGTACCAGAAACCCACTAGCT
CGTACCATATCCCTCCGGAATTCGGCGATGCAAATTCAGCGTGGTAGAAG
CAATCGTGTTAAACTAGCGCCGCTTTTGTCGTCTGCCTGTCTGCTTTGCG
GGGGGTTGTGTGTTCCTCGGTGCGCATGAACCCCAGGTTTTGTTGCCCAT
CCGCCGAGGATTGATGTTCCAGACGGCCAGCGCTACAAGCCGAGTCCAGG
CGAAGAACATCATCATCACCCAAGGGATCGAGATAATGAGCCTGATGTGC
CAAGCCTATCAATCTATCACTGTACCGACACCAGGCTCAAAGAAGGTGGG
AGATCTTTCCGTGCAGAATGTTAGGCGAGAAGCATACATGCACAGCTTTC
GAAAGCTATGAGGACACCCAGCGAAAGTATCCAGACACACTTGTTTGCCA
TTGACCACAACGGTGGCGAAACTTGAAGAACGAACAGAGAATATTGCGAG
TGTAGTGCTCGTGTCGCTGGCCTTGGCGGATCACCGCGTGAGTGTCGGTG
TAGCGAGTATGAATTTGACGGGAAGTGGCGTAAAATATCGATATTCATTG
TCGGCAACTGGCGGCCAATAGCTTTCCGATAGCACTCGACTTCGAGCATA
TCATTCTTCGTTCTCGTTGCCCATCAATTGCCCGTGTGTAAGTAGTTTCG
AAGGGACTTTCTTGGAACGACACATCATCCGCGACCTCCACGGCACTTGC
CTTTCTACTTTAGCCCTTAAGCCGCTGATGGTGGACGATCATTACAATCA
ACGTGATCTTTCACTGTTATTCTATCCGTATCTTCATGCCCCCCCCCACC
GCCACGACCAACGCCAACATCACTGCCCACCACCACCATCATCACTATCA
TCATCACCACCACCATCACCAGCCTAAGCAGTTCTTCGACCAGCTTATGT
CCATTGTGCGATCCCAGCCAAGCCGAGCTTCCTGCGCTGCTGTGTATCAA
ACCGCGAGACTACTTCACCTTTGGGGTCGAGCTCGCGAAGTTCTTCAGCT
GTGGGGCGCCTTACCTTCTTTTGACGCTTGCGAAGATGCCCGGCGCAGCT
CTTGCTTGTCCGACCGCCGCCTGACGGATGCGAAGCTCGACGGGGCGGCT
ACATTTACCAGCCTAAGCAGTATGTCTTCTTCCTCGACATCGATGCAGCG
GGAGTCCTCGTCCGCTAAGAGCAGTACAGATGGCGACACTGACGGCATTG
CTGTGGACGTGTACGAATCTATATTGCTGTTCTGCAAGGCAGACGCGGAG
GCAAGATCAAGTGCTGCATACTTTGATTAG back to topCoding sequence (CDS) from alignment at H-canaliculatus_M_contigs8861:290..4819+ >mRNA_H-canaliculatus_M_contigs8861.1.1 ID=mRNA_H-canaliculatus_M_contigs8861.1.1|Name=mRNA_H-canaliculatus_M_contigs8861.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=987bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8861:290..4819+ (Hapterophycus canaliculatus Oshoro7m male) GTTTTATTCGAGTCTATCCCGGCGAAGCAGGTTGTTTTGCGAATAGAACC AGCAGCGATCCTCGCGGTGGTCTTGACGCAAAGGGGCCACTTCAGGCAGG CCAGGGCATACACCAAAGTGATTGAGGAGTGGAAGGCCGCAGGGCGCCCG GTGCCTCTGTGCCTCGTGATGTATGAACCTGTTGTGACGCTCTTGTCTAT GAACGTGGTCTTAGCTGCGATGGGTGCGGACGACTCCAAGCATCTGAGAT GGCTGAACGACCTTGAGAGTTACCTCAAAGGCGAATCCGGGGTGTCCAAG AGGCCGTTCAACCTGTACGCTTCCATGTCCCTCTTCGGCATGATCTACCC GATGTGCTTCGAGTATGCCGAGATGTTTCGATTTTATCACAGCGTCTACC GCATCGTCTACCATCCTCAGGTTTTGTTGCCCATCCGCCGAGGATTGATG TTCCAGACGGCCAGCGCTACAAGCCGAGTCCAGGCGAAGAACATCATCAT CACCCAAGGGATCGAGATAATGAGCCTGATGTGCCAAGCCTATCAATCTA TCACTGTACCGACACCAGGCTCAAAGAAGCCTAAGCAGTTCTTCGACCAG CTTATGTCCATTGTGCGATCCCAGCCAAGCCGAGCTTCCTGCGCTGCTGT GTATCAAACCGCGAGACTACTTCACCTTTGGGGTCGAGCTCGCGAAGTTC TTCAGCTGTGGGGCGCCTTACCTTCTTTTGACGCTTGCGAAGATGCCCGG CGCAGCTCTTGCTTGTCCGACCGCCGCCTGACGGATGCGAAGCTCGACGG GGCGGCTACATTTACCAGCCTAAGCAGTATGTCTTCTTCCTCGACATCGA TGCAGCGGGAGTCCTCGTCCGCTAAGAGCAGTACAGATGGCGACACTGAC GGCATTGCTGTGGACGTGTACGAATCTATATTGCTGTTCTGCAAGGCAGA CGCGGAGGCAAGATCAAGTGCTGCATACTTTGATTAG back to top
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