mRNA_H-canaliculatus_M_contigs8769.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8769.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8769.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8769.1.1 vs.
Match: Protein (disulfide isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR34_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 4.210e-20
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 1
Query:    1 LLVQVDAVEEKDLGQRFGVTGFPTLKYFPAGRDGVEAEAYGGGRDLKSMVEFINTKVG 174
            ++ +VDAVEEKDLG RFGVTGFPTLKYFPAG DG EAEAYGGGRDLKS VEF+N K G
Sbjct:  199 VVAKVDAVEEKDLGGRFGVTGFPTLKYFPAG-DG-EAEAYGGGRDLKSFVEFLNDKAG 254          
BLAST of mRNA_H-canaliculatus_M_contigs8769.1.1 vs.
Match: protein (disulfide isomerase-like 2-2 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E31E85)

HSP 1 Score: 68.9 bits (167), Expect = 4.680e-12
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 LLVQVDAVEEKDLGQRFGVTGFPTLKYFPAGRDGVEAEAYGGGRDLKSMVEFINTKVG 174
            ++ +VDA  EK LG RFGV+GFPTLKYFP G     AE Y GGRD+K ++ FI +K G
Sbjct:   71 IIAKVDADAEKTLGSRFGVSGFPTLKYFPKGS--TSAEEYSGGRDIKDLMSFIESKSG 126          
BLAST of mRNA_H-canaliculatus_M_contigs8769.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G8J0_PHYRM)

HSP 1 Score: 68.6 bits (166), Expect = 6.290e-12
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 1
Query:    1 LLVQVDAVEEKDLGQRFGVTGFPTLKYFPAGRDGVEAEAYGGGRDLKSMVEFINTKVG 174
            ++ +VDA + KDLG +FGVTGFPTLKYF AG    EAEAY GGR     + F+N K G
Sbjct:   65 VVAEVDADQHKDLGSKFGVTGFPTLKYFAAGT--TEAEAYSGGRSEDDFINFLNDKAG 120          
BLAST of mRNA_H-canaliculatus_M_contigs8769.1.1 vs.
Match: Protein (disulfide-isomerase tigA n=2 Tax=Endocarpon pusillum TaxID=364733 RepID=U1GVI6_ENDPU)

HSP 1 Score: 68.6 bits (166), Expect = 6.690e-12
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    4 LVQVDAVEEKDLGQRFGVTGFPTLKYFPAGRDGVEAEAYGGGRDLKSMVEFINTKVGRLSRS 189
            + +VDA E K LG+RFGV GFPTLK+F  G+ G + E Y GGRDL+S+ +FIN K G  ++S
Sbjct:   83 IAKVDADEHKSLGKRFGVQGFPTLKWFD-GKKGSQPEDYNGGRDLESLTKFINEKTGVKAKS 143          
BLAST of mRNA_H-canaliculatus_M_contigs8769.1.1 vs.
Match: protein (disulfide isomerase-like 2-2 n=3 Tax=Acropora TaxID=6127 RepID=UPI0010FC83A6)

HSP 1 Score: 68.2 bits (165), Expect = 8.810e-12
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 LLVQVDAVEEKDLGQRFGVTGFPTLKYFPAGRDGVEAEAYGGGRDLKSMVEFINTK 168
            ++ +VDA  EKDLG+RFGVTGFPTLK+FP  +D  E E Y GGR+ +  ++F+N K
Sbjct:  191 VVAKVDADSEKDLGERFGVTGFPTLKFFP--KDNKEGEEYNGGREEQDFIDFLNEK 244          
BLAST of mRNA_H-canaliculatus_M_contigs8769.1.1 vs.
Match: PDIL2-2 (protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812SXA1_9DINO)

HSP 1 Score: 68.2 bits (165), Expect = 8.910e-12
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 1
Query:    4 LVQVDAVEEKDLGQRFGVTGFPTLKYFPAGRDGVEAEAYGGGRDLKSMVEFINTKVG 174
            +V VDA   +D+   +GV+G+PTLK+FPAG D  EA  Y GGRDLKS V FINT  G
Sbjct:  197 IVAVDATAHRDVASEYGVSGYPTLKWFPAGED-KEAVDYSGGRDLKSFVSFINTHAG 252          
BLAST of mRNA_H-canaliculatus_M_contigs8769.1.1 vs.
Match: Uncharacterized (protein PDI (Fragment) n=1 Tax=Prunus avium TaxID=42229 RepID=Q9FUL2_PRUAV)

HSP 1 Score: 66.2 bits (160), Expect = 1.110e-11
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    1 LLVQVDAVEEKDLGQRFGVTGFPTLKYFPAGRDGVEAEAYGGGRDLKSMVEFINTKVG 174
            ++  +DA + KDL +++GV+GFPTLK+FP  ++G   E YGGGRDL+  V+FIN K G
Sbjct:   31 VIANLDADKYKDLAEKYGVSGFPTLKFFPKNKEG---EEYGGGRDLEDFVDFINEKSG 85          
BLAST of mRNA_H-canaliculatus_M_contigs8769.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U3A2_SALR5)

HSP 1 Score: 67.4 bits (163), Expect = 1.620e-11
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 LLVQVDAVEEKDLGQRFGVTGFPTLKYFPAGRDGVEAEAYGGGRDLKSMVEFINTKVG 174
            ++ +VDA + ++LG RFGV+GFPTLKYFP G    E EAY GGR  + +V+FIN K G
Sbjct:   72 VIAKVDADKHRELGSRFGVSGFPTLKYFPKGA--TEPEAYSGGRGAEDLVQFINEKSG 127          
BLAST of mRNA_H-canaliculatus_M_contigs8769.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Acidomyces richmondensis BFW TaxID=766039 RepID=A0A150V7P4_9PEZI)

HSP 1 Score: 67.4 bits (163), Expect = 1.700e-11
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    4 LVQVDAVEEKDLGQRFGVTGFPTLKYFPA--GRDGVEAEAYGGGRDLKSMVEFINTKVG 174
            + +VDA  EKDLG+RFGV GFPTLK+F    G DGVE   Y GGRDL+S+VEF+  K G
Sbjct:   77 IAKVDADAEKDLGRRFGVQGFPTLKWFDGKGGEDGVED--YKGGRDLESLVEFVKGKTG 133          
BLAST of mRNA_H-canaliculatus_M_contigs8769.1.1 vs.
Match: Thioredoxin (family protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0EVV0_9ERIC)

HSP 1 Score: 66.2 bits (160), Expect = 2.250e-11
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    1 LLVQVDAVEEKDLGQRFGVTGFPTLKYFPAGRDGVEAEAYGGGRDLKSMVEFINTKVG 174
            ++  VDA + KDLG+++GV+GFPTLK+FP G      E Y GGRDL   V FIN K G
Sbjct:  120 IIANVDAAKHKDLGEKYGVSGFPTLKFFPKGNKA--GEDYNGGRDLDDFVTFINEKCG 175          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8769.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Protein4.210e-2081.03disulfide isomerase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
protein4.680e-1256.90disulfide isomerase-like 2-2 n=1 Tax=Orbicella fav... [more]
Uncharacterized6.290e-1256.90protein n=1 Tax=Phytophthora ramorum TaxID=164328 ... [more]
Protein6.690e-1254.84disulfide-isomerase tigA n=2 Tax=Endocarpon pusill... [more]
protein8.810e-1255.36disulfide isomerase-like 2-2 n=3 Tax=Acropora TaxI... [more]
PDIL2-28.910e-1257.89protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 ... [more]
Uncharacterized1.110e-1151.72protein PDI (Fragment) n=1 Tax=Prunus avium TaxID=... [more]
Uncharacterized1.620e-1155.17protein n=1 Tax=Salpingoeca rosetta (strain ATCC 5... [more]
Uncharacterized1.700e-1161.02protein n=1 Tax=Acidomyces richmondensis BFW TaxID... [more]
Thioredoxin2.250e-1153.45family protein n=1 Tax=Actinidia rufa TaxID=165716... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8769contigH-canaliculatus_M_contigs8769:937..1149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LR34
PFAMsERp29,Pkinase_Tyr,Thioredoxin
Model size213
Max annot lvl2759|Eukaryota
KEGG koko:K09584
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.9e-21
EggNOG OGsCOG0526@1|root,KOG0191@2759|Eukaryota
EC5.3.4.1
Descriptioncell redox homeostasis
Cds size213
COG categoryCO
BRITEko00000,ko00001,ko01000,ko03110,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854172.7039237-CDS-H-canaliculatus_M_contigs8769:936..11491696854172.7039237-CDS-H-canaliculatus_M_contigs8769:936..1149Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8769 937..1149 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8769.1.1prot_H-canaliculatus_M_contigs8769.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8769 937..1149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8769.1.1

>prot_H-canaliculatus_M_contigs8769.1.1 ID=prot_H-canaliculatus_M_contigs8769.1.1|Name=mRNA_H-canaliculatus_M_contigs8769.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=71bp
LLVQVDAVEEKDLGQRFGVTGFPTLKYFPAGRDGVEAEAYGGGRDLKSMV
EFINTKVGRLSRSWTIVRLW*
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mRNA from alignment at H-canaliculatus_M_contigs8769:937..1149+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8769.1.1 ID=mRNA_H-canaliculatus_M_contigs8769.1.1|Name=mRNA_H-canaliculatus_M_contigs8769.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=213bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8769:937..1149+ (Hapterophycus canaliculatus Oshoro7m male)
TTACTCGTCCAGGTTGACGCGGTAGAAGAGAAGGACCTGGGGCAACGCTT CGGCGTCACTGGCTTTCCAACGCTCAAGTATTTCCCGGCCGGGCGCGACG GTGTAGAAGCGGAGGCGTACGGTGGTGGTCGAGACCTCAAGTCAATGGTG GAGTTTATCAACACCAAGGTGGGGAGACTGAGTCGCTCCTGGACAATTGT TCGGTTGTGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8769:937..1149+

>mRNA_H-canaliculatus_M_contigs8769.1.1 ID=mRNA_H-canaliculatus_M_contigs8769.1.1|Name=mRNA_H-canaliculatus_M_contigs8769.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=213bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8769:937..1149+ (Hapterophycus canaliculatus Oshoro7m male)
TTACTCGTCCAGGTTGACGCGGTAGAAGAGAAGGACCTGGGGCAACGCTT
CGGCGTCACTGGCTTTCCAACGCTCAAGTATTTCCCGGCCGGGCGCGACG
GTGTAGAAGCGGAGGCGTACGGTGGTGGTCGAGACCTCAAGTCAATGGTG
GAGTTTATCAACACCAAGGTGGGGAGACTGAGTCGCTCCTGGACAATTGT
TCGGTTGTGGTGA
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