mRNA_H-canaliculatus_M_contigs8768.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8768.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8768.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8768.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX44_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.530e-64
Identity = 99/138 (71.74%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 KHSEEENRALNLGVNASFLAAVVVMAIVVVFGVDSDVSRGWTAGEVIRRVPLDNWEGYSSSLRDNPVLVKACTSGIVYTMGDWVAQTVEGTDLSEIKRGRVLRSALAGLLLHGPLSHVWYDVCEWLFDIVDWNDYWWV 414
            K+ EEEN+ LNL  NA FLA V +  I VVFGV+S+VSRGWT GE I RVPLDNW+GYS  LR +PV VKACTSGIVY +GD VAQ++EGT+L+EI+R RV+RSA+AGLLLHGPLSHVWY+VCE LFDIV WN+YWWV
Sbjct:  103 KNREEENKKLNLFANAGFLAGVALFTIAVVFGVNSEVSRGWTIGEYILRVPLDNWDGYSEMLRQSPVQVKACTSGIVYALGDLVAQSMEGTELAEIERQRVVRSAMAGLLLHGPLSHVWYNVCEGLFDIVGWNEYWWV 240          
BLAST of mRNA_H-canaliculatus_M_contigs8768.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Z2_9STRA)

HSP 1 Score: 161 bits (407), Expect = 3.600e-46
Identity = 78/138 (56.52%), Postives = 93/138 (67.39%), Query Frame = 1
Query:    1 KHSEEENRALNLGVNASFLAAVVVMAIVVVFGVDSDVSRGWTAGEVIRRVPLDNWEGYSSSLRDNPVLVKACTSGIVYTMGDWVAQTVEGTDLSEIKRGRVLRSALAGLLLHGPLSHVWYDVCEWLFDIVDWNDYWWV 414
            K   EE+R +N  VN+ FL AV+V   V +     D SRGWTA EV+ R+P DNW+GY   LR +PVLVKA TSG VY +GDW AQT  GT L+E+ R RV RSA AG + HGPLSH WY+VCE LF  + WN  WWV
Sbjct:   50 KSEMEEDREVNFLVNSGFLIAVIVTVAVRLASSTLDASRGWTAEEVLLRLPQDNWQGYMDMLRSHPVLVKAVTSGTVYALGDWTAQTTNGTPLAELDRWRVARSAAAGFVGHGPLSHCWYEVCEALFSAIGWNGAWWV 187          
BLAST of mRNA_H-canaliculatus_M_contigs8768.1.1 vs.
Match: Predicted (protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G9T7_PHATC)

HSP 1 Score: 129 bits (323), Expect = 1.400e-34
Identity = 56/124 (45.16%), Postives = 85/124 (68.55%), Query Frame = 1
Query:   40 VNASFLAAVVVMAIVVVFGVDSDVSRGWTAGEVIRRVPLDNWEGYSSSLRDNPVLVKACTSGIVYTMGDWVAQTVEGTDLSEIKRGRVLRSALAGLLLHGPLSHVWYDVCEWLFD-IVDWNDYW 408
            +N  F+  VV + +  +  +D+ +SRGWT+ E+  R+P+D W GYS  L ++PV  KA TS  VYT+GD++AQ  +G  + ++ RGR++RS LAGL+ HGPLSH WY+VC+  FD ++ W  +W
Sbjct:    2 INTGFIVGVVGVLLYEITTMDATISRGWTSEELAARIPMDVWAGYSQVLENSPVATKAATSATVYTIGDFIAQRTQGAAMGDLDRGRIVRSMLAGLIGHGPLSHFWYNVCDHFFDNVLHWTAWW 125          
BLAST of mRNA_H-canaliculatus_M_contigs8768.1.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N9P3_9STRA)

HSP 1 Score: 129 bits (324), Expect = 5.760e-34
Identity = 60/128 (46.88%), Postives = 86/128 (67.19%), Query Frame = 1
Query:   28 LNLGVNASFLAAVVVMAIVVVFGVDSDVSRGWTAGEVIRRVPLDNWEGYSSSLRDNPVLVKACTSGIVYTMGDWVAQTVEGTDLSEIKRGRVLRSALAGLLLHGPLSHVWYDVCEWLF-DIVDWNDYW 408
            +N  VN   + AV +  +  +  VD+ + RGWTA E+  R+P+DNW  YS+ L ++PV  KA TS  VYT+GD +AQ  EG  + E+ R R++RS LAGL+ HGPLSH+WYD  E LF D+++W ++W
Sbjct:  147 INSIVNTGIVLAVTIAVLSKLATVDAGLMRGWTAAEMAARIPVDNWNSYSAVLENSPVSTKAFTSATVYTIGDIIAQRTEGATIGELDRPRIVRSLLAGLIGHGPLSHIWYDKSETLFSDVLEWTEWW 274          
BLAST of mRNA_H-canaliculatus_M_contigs8768.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HYH1_9STRA)

HSP 1 Score: 127 bits (320), Expect = 5.050e-33
Identity = 60/128 (46.88%), Postives = 84/128 (65.62%), Query Frame = 1
Query:   28 LNLGVNASFLAAVVVMAIVVVFGVDSDVSRGWTAGEVIRRVPLDNWEGYSSSLRDNPVLVKACTSGIVYTMGDWVAQTVEGTDLSEIKRGRVLRSALAGLLLHGPLSHVWYDVCEWLFD-IVDWNDYW 408
            +N  +N + + AV+V  +  V  VD+ ++RGWT  EV  R+P+DNW  YS+ L D P+  KA TS  VYT+GD +AQ  EG  + ++ R R+LRS LAGL+ HGPLSH WYD  E  FD ++ W ++W
Sbjct:   98 INSFINTAVVIAVLVALLSKVASVDAGLTRGWTPEEVAARIPMDNWSSYSAVLEDAPISTKAITSASVYTIGDVIAQRTEGNSMGDLDRPRILRSLLAGLIGHGPLSHFWYDYSEAFFDDVLKWTEWW 225          
BLAST of mRNA_H-canaliculatus_M_contigs8768.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KHW9_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.230e-32
Identity = 63/142 (44.37%), Postives = 86/142 (60.56%), Query Frame = 1
Query:    7 SEEENRALNLG-------VNASFLAAVVVMAIVVVFGVDSDVSRGWTAGEVIRRVPLDNWEGYSSSLRDNPVLVKACTSGIVYTMGDWVAQTVEGTDLSEIKRGRVLRSALAGLLLHGPLSHVWYDVCEWLFDIVDWNDYWW 411
            S EE++++ L        +N S     +   +  V  VD  ++RGWTA E+  R+PLDNW  Y++ L   P+  KA TS  VYT+GD +AQ  EG D+ ++ RGR+LRSALAGL+ HGP+SHVWY V E  FD +     WW
Sbjct:  105 SAEESQSIQLRSVDKDALINTSIFIIAIATVVTTVLSVDVGITRGWTAEEIALRIPLDNWRSYTNILSMAPIETKAVTSATVYTIGDIIAQKTEGLDIGKLDRGRILRSALAGLIGHGPMSHVWYHVSEDFFDNILHLHAWW 246          
BLAST of mRNA_H-canaliculatus_M_contigs8768.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VV68_9STRA)

HSP 1 Score: 126 bits (316), Expect = 2.330e-32
Identity = 61/127 (48.03%), Postives = 78/127 (61.42%), Query Frame = 1
Query:   28 LNLGVNASFLAAVVVMAIVVVFGVDSDVSRGWTAGEVIRRVPLDNWEGYSSSLRDNPVLVKACTSGIVYTMGDWVAQTVEGTDLSEIKRGRVLRSALAGLLLHGPLSHVWYDVCEWLFDIVDWNDYW 408
            +N  +N   +  V +  +  V  VD D+ RGWTA E + R+ LDNW  YS  L   P+  KA TS  VY +GD +AQ  EG  + E+ R R LRS LAGL+ HGPLSHVWYDV E LF  + WN++W
Sbjct:  106 INETINTGLIVLVALGVLARVGTVDQDMMRGWTAAESLTRISLDNWADYSEILNAAPLQTKAITSATVYAIGDIIAQRTEGVSMGELDRPRTLRSLLAGLIGHGPLSHVWYDVSEELFTALHWNEWW 232          
BLAST of mRNA_H-canaliculatus_M_contigs8768.1.1 vs.
Match: Uncharacterized (protein n=10 Tax=Citrus TaxID=2706 RepID=V4ULS9_CITCL)

HSP 1 Score: 125 bits (313), Expect = 3.470e-32
Identity = 59/130 (45.38%), Postives = 78/130 (60.00%), Query Frame = 1
Query:    7 SEEENRALNLGVNASFLAAVVVMAIVVVFGVDSDVSRGWTAGEVIRRVPLDNWEGYSSSLRDNPVLVKACTSGIVYTMGDWVAQTVEGTDLSEIKRGRVLRSALAGLLLHGPLSHVWYDVCEWLFDIVDW 396
            +EE  R ++  +NA+ + AV   AI  +  +D D   GWT  E++R  PL NW  Y ++L+ NPVL K   SG+VY++GDW+AQ  EG  L E  R R+ RS L G  LHG LSH +Y  CE LF   DW
Sbjct:  121 NEEMGRLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEAALKTNPVLAKMVISGVVYSLGDWIAQCFEGKPLFEFDRTRMFRSGLVGFTLHGSLSHYYYQFCEELFPFQDW 250          
BLAST of mRNA_H-canaliculatus_M_contigs8768.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Citrus sinensis TaxID=2711 RepID=A0A067G3I6_CITSI)

HSP 1 Score: 123 bits (309), Expect = 3.630e-32
Identity = 58/130 (44.62%), Postives = 77/130 (59.23%), Query Frame = 1
Query:    7 SEEENRALNLGVNASFLAAVVVMAIVVVFGVDSDVSRGWTAGEVIRRVPLDNWEGYSSSLRDNPVLVKACTSGIVYTMGDWVAQTVEGTDLSEIKRGRVLRSALAGLLLHGPLSHVWYDVCEWLFDIVDW 396
            +EE  R ++  +NA+ + AV   AI  +  +D D   GWT  E++R  PL NW  Y  +L+ NPVL K   SG+VY++GDW+AQ  +G  L E  R R+ RS L G  LHG LSH +Y  CE LF   DW
Sbjct:   10 NEEMERLIDRTINATIVLAVGTFAITKLLTIDQDYWHGWTIFEIVRYAPLHNWTAYEEALKTNPVLAKMVISGVVYSLGDWIAQCFQGKPLFEFDRTRMFRSGLVGFTLHGSLSHYYYQFCEELFPFQDW 139          
BLAST of mRNA_H-canaliculatus_M_contigs8768.1.1 vs.
Match: protein (SYM1 isoform X1 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0009F6167A)

HSP 1 Score: 122 bits (307), Expect = 6.420e-32
Identity = 56/129 (43.41%), Postives = 77/129 (59.69%), Query Frame = 1
Query:   10 EEENRALNLGVNASFLAAVVVMAIVVVFGVDSDVSRGWTAGEVIRRVPLDNWEGYSSSLRDNPVLVKACTSGIVYTMGDWVAQTVEGTDLSEIKRGRVLRSALAGLLLHGPLSHVWYDVCEWLFDIVDW 396
            EE+++ ++  +NAS + A    AI  +  +D D   GWT  E++R  P  NW  Y  +L+ NPVL K   SG+VY++GDW+AQ   G  L E  R R+ RS L G  LHG LSH +Y+ CE+LF   DW
Sbjct:    4 EEQDKMVDRAINASIVLAAGTFAITKLLTIDMDYWHGWTIYEIVRYAPQHNWTAYEEALKTNPVLAKMMISGVVYSIGDWIAQCYAGKPLFEFDRARMFRSGLTGFALHGSLSHYYYEFCEFLFPFQDW 132          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8768.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.530e-6471.74protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Uncharacterized3.600e-4656.52protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Predicted1.400e-3445.16protein (Fragment) n=3 Tax=Phaeodactylum tricornut... [more]
Hypothetical5.760e-3446.88protein (Fragment) n=2 Tax=Odontella aurita TaxID=... [more]
Hypothetical5.050e-3346.88protein n=1 Tax=Helicotheca tamesis TaxID=374047 R... [more]
Hypothetical1.230e-3244.37protein n=2 Tax=Skeletonema marinoi TaxID=267567 R... [more]
Hypothetical2.330e-3248.03protein n=1 Tax=Grammatophora oceanica TaxID=21045... [more]
Uncharacterized3.470e-3245.38protein n=10 Tax=Citrus TaxID=2706 RepID=V4ULS9_CI... [more]
Uncharacterized3.630e-3244.62protein n=1 Tax=Citrus sinensis TaxID=2711 RepID=A... [more]
protein6.420e-3243.41SYM1 isoform X1 n=1 Tax=Dendrobium catenatum TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8768contigH-canaliculatus_M_contigs8768:168..1410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G2C4
PFAMsMpv17_PMP22
Model size420
Max annot lvl2759|Eukaryota
KEGG koko:K13348
KEGG Pathwayko04146,map04146
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005779,GO:0016020,GO:0016021,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
Exons2
Evalue2.12e-66
EggNOG OGsKOG1944@1|root,KOG1944@2759|Eukaryota
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-16_001670.1
DescriptionBelongs to the peroxisomal membrane protein PXMP2 4 family
Cds size420
COG categoryC
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854172.658518-CDS-H-canaliculatus_M_contigs8768:167..4821696854172.658518-CDS-H-canaliculatus_M_contigs8768:167..482Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8768 168..482 -
1696854172.6722782-CDS-H-canaliculatus_M_contigs8768:1305..14101696854172.6722782-CDS-H-canaliculatus_M_contigs8768:1305..1410Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8768 1306..1410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8768.1.1prot_H-canaliculatus_M_contigs8768.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8768 168..1410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8768.1.1

>prot_H-canaliculatus_M_contigs8768.1.1 ID=prot_H-canaliculatus_M_contigs8768.1.1|Name=mRNA_H-canaliculatus_M_contigs8768.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=140bp
KHSEEENRALNLGVNASFLAAVVVMAIVVVFGVDSDVSRGWTAGEVIRRV
PLDNWEGYSSSLRDNPVLVKACTSGIVYTMGDWVAQTVEGTDLSEIKRGR
VLRSALAGLLLHGPLSHVWYDVCEWLFDIVDWNDYWWVE*
back to top

mRNA from alignment at H-canaliculatus_M_contigs8768:168..1410-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8768.1.1 ID=mRNA_H-canaliculatus_M_contigs8768.1.1|Name=mRNA_H-canaliculatus_M_contigs8768.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1243bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8768:168..1410- (Hapterophycus canaliculatus Oshoro7m male)
AAACACAGTGAGGAGGAGAACAGAGCCTTGAACCTTGGGGTGAACGCGAG CTTCTTGGCAGCTGTGGTGGTGATGGCGATCGTTGTGGTCTTCGGAGTGG ATTCGGTGAGTGAAGCATCGTGCGCGGCAGCTGCTCAGATGCTCACTCCC CCCTCCTTCGCCCCCGCTCCCCGTGTGCGCCTAGAAGGTTCTCGAGGTCG GGTTTGATCGCAACGACCAAGCGCAGGAGAGCTGGTAATCGCACTGCTTG GGCTACATGAAGATTTTGAACCCTTGACAGGTTTTTTAATAAAACAAGTC AACAACACCGAAGGAATACCCACCTGAGACACTGTCCATCTCAATGGGCT TTTTTTTTTCTCGGCACTCCCACGGCTAAGGAGAGATGGGACACAACAGT CTGGTGCAAGTTGATTCCGCGAAGACCGGGGCTTACGCCCCCCCCGGCGA ACACCAGGCCCCTGATCGACCTCTTTTGGGCGCTTCTGTCAGGTCGTGGT TGAAATAATTCCCACACCTTCGTGTTTTTGCTTGAGCGGTGGCCAGGCTA TGTCCCGCCAATGGCCGCGTCTCTTTTCTGAAGAAAAATATCCAGCAACA CTCGACGAATATATTCGGAGCCACTTCTCAGTCGGAGTCTCAGGAGGCTT GCGTTGAATCTGTACTATTGAGGGTTCAGTGCGTTGGACAGGTTAAGCAC ATCAACGAAGTAGAGTGCTCCCCCGACCCCCCCGCATCGTGGCGCGTATG GCTGAAGAACCCCGCGTGGATCAATATACAAGAGACCCGGGAAATGACAC TCACGTTCTTTTCAAGCCGAAGAGGCAGGAAAGGAAAGGCGACACATGTC GGACCGACTAGACCTTTCCCGCGTCCTCCATGTTGTTCTGATTTCGCGCG CCTTACCGCGCCAAACAAAATGCACCAGGACGTTTCCCGGGGCTGGACCG CCGGAGAGGTAATCCGGCGGGTGCCCCTGGACAATTGGGAGGGCTACTCC AGCAGTCTTCGGGACAATCCGGTGCTGGTTAAGGCCTGCACGAGCGGGAT CGTCTACACCATGGGAGACTGGGTGGCGCAAACGGTGGAGGGTACCGATC TGTCGGAGATCAAGAGGGGCAGGGTGCTGAGGTCGGCGCTCGCGGGGCTG TTGCTGCACGGACCCTTGAGCCACGTCTGGTACGACGTGTGCGAGTGGTT GTTCGACATCGTCGACTGGAACGACTACTGGTGGGTCGAGTAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8768:168..1410-

>mRNA_H-canaliculatus_M_contigs8768.1.1 ID=mRNA_H-canaliculatus_M_contigs8768.1.1|Name=mRNA_H-canaliculatus_M_contigs8768.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=420bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8768:168..1410- (Hapterophycus canaliculatus Oshoro7m male)
AAACACAGTGAGGAGGAGAACAGAGCCTTGAACCTTGGGGTGAACGCGAG
CTTCTTGGCAGCTGTGGTGGTGATGGCGATCGTTGTGGTCTTCGGAGTGG
ATTCGGACGTTTCCCGGGGCTGGACCGCCGGAGAGGTAATCCGGCGGGTG
CCCCTGGACAATTGGGAGGGCTACTCCAGCAGTCTTCGGGACAATCCGGT
GCTGGTTAAGGCCTGCACGAGCGGGATCGTCTACACCATGGGAGACTGGG
TGGCGCAAACGGTGGAGGGTACCGATCTGTCGGAGATCAAGAGGGGCAGG
GTGCTGAGGTCGGCGCTCGCGGGGCTGTTGCTGCACGGACCCTTGAGCCA
CGTCTGGTACGACGTGTGCGAGTGGTTGTTCGACATCGTCGACTGGAACG
ACTACTGGTGGGTCGAGTAG
back to top