mRNA_H-canaliculatus_M_contigs869.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs869.1.1 vs.
Match: ThiC-associated (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRY4_ECTSI) HSP 1 Score: 314 bits (804), Expect = 9.750e-99 Identity = 147/150 (98.00%), Postives = 148/150 (98.67%), Query Frame = 2
Query: 2 LGLPNKYDVKQGLMAYRIAAHAADLAKGHPRAQEWDDCLSKARFEFRWNDQFNLALDPPTARSYHDETLPADGGKTAHFCSMCGPKFCSMKITDDVREYAKEQGYGVDEALAAGMEKMGELYKQNGQQLYSEDFVTEDNTGLENKILKNE 451
LGLPNKYDVKQGLMAYRIAAHAADLAKGHPRAQEWDDCLSKARFEFRWNDQFNLALDPPTARSYHDETLPADGGKTAHFCSMCGPKFCSMKITDDVREYAKEQGYGV+EALAAGMEKMGELYKQ GQQLYSEDFV EDNTGLENKILKNE
Sbjct: 491 LGLPNKYDVKQGLMAYRIAAHAADLAKGHPRAQEWDDCLSKARFEFRWNDQFNLALDPPTARSYHDETLPADGGKTAHFCSMCGPKFCSMKITDDVREYAKEQGYGVEEALAAGMEKMGELYKQKGQQLYSEDFVEEDNTGLENKILKNE 640
BLAST of mRNA_H-canaliculatus_M_contigs869.1.1 vs.
Match: ThiC (family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z789_9STRA) HSP 1 Score: 260 bits (665), Expect = 3.990e-78 Identity = 118/146 (80.82%), Postives = 130/146 (89.04%), Query Frame = 2
Query: 2 LGLPNKYDVKQGLMAYRIAAHAADLAKGHPRAQEWDDCLSKARFEFRWNDQFNLALDPPTARSYHDETLPADGGKTAHFCSMCGPKFCSMKITDDVREYAKEQGYGVDEALAAGMEKMGELYKQNGQQLYSEDFVTEDNTGLENKI 439
LGLPNK DVKQGLMAYRIA+HAADLAKGHP AQ WDD LSKARFEFRW DQFNLALDPPTAR+YHD LP +G KTAHFCSMCGPKFCSMKIT+DVREYA+E GYG++ A+AAGM +MGELYK+ GQQLYS+DFV DNTGLE+ I
Sbjct: 490 LGLPNKEDVKQGLMAYRIASHAADLAKGHPNAQVWDDALSKARFEFRWEDQFNLALDPPTARAYHDANLPGEGAKTAHFCSMCGPKFCSMKITEDVREYAREHGYGIEAAIAAGMAEMGELYKEQGQQLYSKDFVARDNTGLEDSI 635
BLAST of mRNA_H-canaliculatus_M_contigs869.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT56_9STRA) HSP 1 Score: 224 bits (570), Expect = 1.170e-67 Identity = 103/144 (71.53%), Postives = 122/144 (84.72%), Query Frame = 2
Query: 2 LGLPNKYDVKQGLMAYRIAAHAADLAKGHPRAQEWDDCLSKARFEFRWNDQFNLALDPPTARSYHDETLPADGGKTAHFCSMCGPKFCSMKITDDVREYAKEQGYGVDEALAAGMEKMGELYKQNGQQLYSEDFVTEDNTGLEN 433
LGLPNK DVKQGL+AYRIAAHAADLAK HP A++WDD LSKARFEFRW DQFNLALDP TAR+YHDET+P++ GK+AHFCSMCGPKFCSMKIT+DVR YA E+GYGV +A GM++M ++YK+ GQ+LY + ED TGL +
Sbjct: 170 LGLPNKEDVKQGLIAYRIAAHAADLAKSHPGAKDWDDALSKARFEFRWEDQFNLALDPITARAYHDETIPSEAGKSAHFCSMCGPKFCSMKITEDVRNYAAEKGYGVFDANQMGMQEMSQVYKEQGQELYHK---VEDKTGLSD 310
BLAST of mRNA_H-canaliculatus_M_contigs869.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5LU33_HETAK) HSP 1 Score: 219 bits (557), Expect = 1.930e-62 Identity = 106/145 (73.10%), Postives = 118/145 (81.38%), Query Frame = 2
Query: 2 LGLPNKYDVKQGLMAYRIAAHAADLAKGHPRAQEWDDCLSKARFEFRWNDQFNLALDPPTARSYHDETLPADGGKTAHFCSMCGPKFCSMKITDDVREYAKEQGYG---VDEALAAGMEKMGELYKQNGQQLYSEDFVTEDNTGL 427
LGLPN+ DVK GL+AYRIAAHAADLAK HP +Q+WDD LSKARFEFRW DQFNLALDP TAR+YHDET+P + GK+AHFCSMCGPKFCSMKIT+DVR+YA E GYG +E LA GME M E Y Q GQQLYS + VT N GL
Sbjct: 480 LGLPNREDVKAGLIAYRIAAHAADLAKEHPGSQKWDDTLSKARFEFRWEDQFNLALDPITARAYHDETIPTEAGKSAHFCSMCGPKFCSMKITEDVRQYAAENGYGDLTAEEILARGMEGMSEEYNQAGQQLYSREGVT--NVGL 622
BLAST of mRNA_H-canaliculatus_M_contigs869.1.1 vs.
Match: Phosphomethylpyrimidine (synthase (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A3D5P2P4_9BACT) HSP 1 Score: 209 bits (531), Expect = 3.250e-62 Identity = 92/132 (69.70%), Postives = 111/132 (84.09%), Query Frame = 2
Query: 2 LGLPNKYDVKQGLMAYRIAAHAADLAKGHPRAQEWDDCLSKARFEFRWNDQFNLALDPPTARSYHDETLPADGGKTAHFCSMCGPKFCSMKITDDVREYAKEQGYGVDEALAAGMEKMGELYKQNGQQLYSE 397
LGLPN+ DVK+G++ Y+IAAHAADLAKGHP AQ WDD +SKARFEFRW DQFNLALDP TA YHDETLPA+G K AHFCSMCGPKFCSMKIT+D+R++A+EQG G EA+ +GME+M +++ G +LY E
Sbjct: 146 LGLPNRDDVKRGVITYKIAAHAADLAKGHPGAQAWDDAISKARFEFRWRDQFNLALDPVTAEEYHDETLPAEGAKVAHFCSMCGPKFCSMKITEDIRQFAREQGIGESEAIESGMEQMAGEFREKGAELYVE 277
BLAST of mRNA_H-canaliculatus_M_contigs869.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2MW74_9DINO) HSP 1 Score: 203 bits (516), Expect = 8.330e-62 Identity = 93/120 (77.50%), Postives = 105/120 (87.50%), Query Frame = 2
Query: 2 LGLPNKYDVKQGLMAYRIAAHAADLAKGHPRAQEWDDCLSKARFEFRWNDQFNLALDPPTARSYHDETLPADGGKTAHFCSMCGPKFCSMKITDDVREYAKEQGYGVD--EALAAGMEKM 355
LGLPN+ DVK G++AYRIAAHAADLAKGHP+AQ+WDD LSKARFEFRWNDQFNLALDP TARS HDET+P + GK+AHFCSMCGPKFCSMKITDDVR YA E+GYG D +A+ GM +M
Sbjct: 20 LGLPNREDVKAGIVAYRIAAHAADLAKGHPKAQDWDDALSKARFEFRWNDQFNLALDPVTARSMHDETIPTESGKSAHFCSMCGPKFCSMKITDDVRAYAAERGYGSDGEKAIEEGMAEM 139
BLAST of mRNA_H-canaliculatus_M_contigs869.1.1 vs.
Match: Phosphomethylpyrimidine (synthase ThiC n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A848XTA8_9BACT) HSP 1 Score: 202 bits (514), Expect = 2.310e-61 Identity = 92/145 (63.45%), Postives = 110/145 (75.86%), Query Frame = 2
Query: 2 LGLPNKYDVKQGLMAYRIAAHAADLAKGHPRAQEWDDCLSKARFEFRWNDQFNLALDPPTARSYHDETLPADGGKTAHFCSMCGPKFCSMKITDDVREYAKEQGYGVDEALAAGMEKMGELYKQNGQQLYSEDFVTEDNTGLENK 436
LGLPN+ DVK G++AY+IAAHAADLAKGHP AQ WDD LS ARFEFRW DQFNLALDP TA S+HDETLPA+G K AHFCSMCGPKFCSMKI++D+R YA E+G D+A GM++M + ++ G +LY D G E +
Sbjct: 10 LGLPNRDDVKDGVIAYKIAAHAADLAKGHPGAQAWDDALSLARFEFRWRDQFNLALDPMTAVSFHDETLPAEGAKVAHFCSMCGPKFCSMKISEDIRRYASERGVQTDQAREMGMDEMADRFRAQGSELYVPAATATDGDGSEGE 154
BLAST of mRNA_H-canaliculatus_M_contigs869.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QJD7_9DINO) HSP 1 Score: 201 bits (510), Expect = 1.460e-60 Identity = 91/118 (77.12%), Postives = 101/118 (85.59%), Query Frame = 2
Query: 2 LGLPNKYDVKQGLMAYRIAAHAADLAKGHPRAQEWDDCLSKARFEFRWNDQFNLALDPPTARSYHDETLPADGGKTAHFCSMCGPKFCSMKITDDVREYAKEQGYGVDEALAAGMEKM 355
LGLPN+ DVK G++AYRIAAHAADLAKGHP AQ+WDD LSKARFEFRWNDQFNLALDP TARS HDET+P + GK+AHFCSMCGPKFCSMKITDDVR YAKE+GY ++ A E M
Sbjct: 52 LGLPNRDDVKAGIIAYRIAAHAADLAKGHPGAQDWDDALSKARFEFRWNDQFNLALDPTTARSMHDETIPTESGKSAHFCSMCGPKFCSMKITDDVRAYAKERGYPTEDVAKAAEEGM 169
BLAST of mRNA_H-canaliculatus_M_contigs869.1.1 vs.
Match: Hydroxymethylpyrimidine (phosphate synthase ThiC n=1 Tax=Arcticibacter svalbardensis MN12-7 TaxID=1150600 RepID=R9GR47_9SPHI) HSP 1 Score: 201 bits (511), Expect = 1.730e-60 Identity = 93/130 (71.54%), Postives = 106/130 (81.54%), Query Frame = 2
Query: 2 LGLPNKYDVKQGLMAYRIAAHAADLAKGHPRAQEWDDCLSKARFEFRWNDQFNLALDPPTARSYHDETLPADGGKTAHFCSMCGPKFCSMKITDDVREYAKEQGYGVDEALAAGMEKMGELYKQNGQQLY 391
LGLPNK DVK G++ Y+IAAHAADLAKGHP AQ D+ LSKARFEFRW DQFNL+LDP TAR +HDETLPADG K AHFCSMCGP FCSMKIT DVREYAKEQG ++AL+ GME+ + + Q G Q+Y
Sbjct: 56 LGLPNKKDVKDGVITYKIAAHAADLAKGHPGAQYRDNALSKARFEFRWEDQFNLSLDPDTAREFHDETLPADGAKIAHFCSMCGPNFCSMKITQDVREYAKEQGMADNDALSKGMEEKSKEFLQKGSQIY 185
BLAST of mRNA_H-canaliculatus_M_contigs869.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2DUN1_9STRA) HSP 1 Score: 205 bits (521), Expect = 2.330e-60 Identity = 96/134 (71.64%), Postives = 115/134 (85.82%), Query Frame = 2
Query: 2 LGLPNKYDVKQGLMAYRIAAHAADLAKGHPRAQEWDDCLSKARFEFRWNDQFNLALDPPTARSYHDETLPADGGKTAHFCSMCGPKFCSMKITDDVREYAKEQGYGVDE-ALAAGMEKMGELYKQNGQQLYSED 400
LGLPN+ DVK G++AY+IAAHAADLAKG P AQ+ DD LSKARFEFRWNDQFNL+LDP TAR++HDETL +D K++HFCSMCGPKFCSMKIT+DVR YA+E+GYGV+E A+ AGM +M E YK+ G QLY +D
Sbjct: 159 LGLPNRDDVKAGIIAYKIAAHAADLAKGLPGAQDRDDALSKARFEFRWNDQFNLSLDPVTARAFHDETLDSDASKSSHFCSMCGPKFCSMKITEDVRAYAEEKGYGVEEDAIQAGMTEMSEKYKELGNQLYLQD 292 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs869.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs869.1.1 >prot_H-canaliculatus_M_contigs869.1.1 ID=prot_H-canaliculatus_M_contigs869.1.1|Name=mRNA_H-canaliculatus_M_contigs869.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=138bp MAYRIAAHAADLAKGHPRAQEWDDCLSKARFEFRWNDQFNLALDPPTARSback to top mRNA from alignment at H-canaliculatus_M_contigs869:2120..4072+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs869.1.1 ID=mRNA_H-canaliculatus_M_contigs869.1.1|Name=mRNA_H-canaliculatus_M_contigs869.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1953bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs869:2120..4072+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs869:2120..4072+ >mRNA_H-canaliculatus_M_contigs869.1.1 ID=mRNA_H-canaliculatus_M_contigs869.1.1|Name=mRNA_H-canaliculatus_M_contigs869.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=414bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs869:2120..4072+ (Hapterophycus canaliculatus Oshoro7m male)back to top |