mRNA_H-canaliculatus_M_contigs8660.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8660.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ5_ECTSI) HSP 1 Score: 304 bits (778), Expect = 3.340e-91 Identity = 211/314 (67.20%), Postives = 229/314 (72.93%), Query Frame = 1
Query: 1 NSIALETLLAGADVHLFNNSENPGNPFYSPAA--TNGTGLNVNQAEVLSAVGGGMAALNGRIHQISEPLRTPASDLFSLLSSHPQLSGWADWVKLAGLADLLSDPDAGPFTVFAPVNSALESVPGGVMPVVNDKKNLAKLVRFHVALGALTPTAAAAAPGGRLFTPTLANATAEERSALSGDRFASGPRLWTLLYDDYEDESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKYGGVDLFLGAFAAEVVLPDMGAVNGVVHGISGVMTYPGYKRP 936
+S+ LETLL G DVHLFNNSEN GNPFYSPAA TN +GLNVNQAEVL GMAALNGRIHQISEPLR PA D+FSLLSSHPQL+GWADWV+L GLA+LLSDP AGPFTVFAPV+SALE V G+M + + ++L KLVRFHVALG T T A+ RLFTP+LANATAEERSALSGDRF SGPRLWTLL D+ED+ XXXXXXXXXXXXXXXXXXXXXXXXXXX K GG LFLGAF AEVVLPD+ AVNGVVHGISGVMTYPGY RP
Sbjct: 875 DSVELETLL-GEDVHLFNNSENLGNPFYSPAAAATNMSGLNVNQAEVLRP-DVGMAALNGRIHQISEPLRVPAPDVFSLLSSHPQLTGWADWVELTGLAELLSDPTAGPFTVFAPVDSALEQV-AGLMTIASHTESLTKLVRFHVALGTATTTTAS-----RLFTPSLANATAEERSALSGDRFVSGPRLWTLL--DHEDDGDHEGSSDRERARMLSXXXXXXXXXXXXXXXXXXXXXXXXXXXVRVFVGPDGVGQQ-------------HKGGGGGLFLGAFTAEVVLPDLNAVNGVVHGISGVMTYPGYVRP 1165
BLAST of mRNA_H-canaliculatus_M_contigs8660.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J734_9PHAE) HSP 1 Score: 291 bits (745), Expect = 9.200e-86 Identity = 190/314 (60.51%), Postives = 210/314 (66.88%), Query Frame = 1
Query: 1 NSIALETLLAGADVHLFNNSENPGNPFYSPAA--TNGTGLNVNQAEVLSAVGGGMAALNGRIHQISEPLRTPASDLFSLLSSHPQLSGWADWVKLAGLADLLSDPDAGPFTVFAPVNSALESVPGGVMPVVNDKKNLAKLVRFHVALGALTPTAAAAAPGGRLFTPTLANATAEERSALSGDRFASGPRLWTLLYDDYEDESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKYGGVDLFLGAFAAEVVLPDMGAVNGVVHGISGVMTYPGYKRP 936
+S+ LETL G DVHLFNNSENPGNPFYSPAA T+ +GLNVNQAEVL G MAALNGRIHQISEPLR PA D+FSLLSSHPQL+GWADW++L GLA+LLSD AGPFTVFAPV+SALE V G+M + + ++L KLVRFHVALG T AA+ RLFTP+LANATAEERS LSGDRF SGP+LWTLL D+ED XXXXXXXXXXXXX DLFLGAF AEVVLPD+ AVNGVVHGISGVMTYPGY RP
Sbjct: 1216 DSVGLETLW-GEDVHLFNNSENPGNPFYSPAAAATSMSGLNVNQAEVLRPEVG-MAALNGRIHQISEPLRVPAPDVFSLLSSHPQLTGWADWIELTGLAELLSDRTAGPFTVFAPVDSALEQV-AGLMTIASHTESLTKLVRFHVALGTATTAAAS-----RLFTPSLANATAEERSTLSGDRFVSGPQLWTLL--DHEDGGDHEGSSDRAQARMLSVQIAAAGAATDNDGGSGASAGSSDCVRVFVGPDGXXXXXXXXXXXXX------------DLFLGAFTAEVVLPDLNAVNGVVHGISGVMTYPGYVRP 1507
BLAST of mRNA_H-canaliculatus_M_contigs8660.1.1 vs.
Match: Fasciclin (domain-containing protein n=1 Tax=Sphingorhabdus profundilacus TaxID=2509718 RepID=A0A6I4LTQ4_9SPHN) HSP 1 Score: 60.1 bits (144), Expect = 3.660e-7 Identity = 47/132 (35.61%), Postives = 68/132 (51.52%), Query Frame = 1
Query: 139 SAVGGGMAALNGRIHQISEPL-----RTPASDLFSLLSSHPQLSGWADWVKLAGLADLLSDPDAGPFTVFAPVNSALESVPGGVMPVV---NDKKNLAKLVRFHVALGALTPT---AAAAAPGGRLFTPTLA 501
SA+GG A N H+++ P PA + S+ P L+ VK AGL + L+ P GPFTVFAP N+A E +P G + ++ +K L K++ +HV G LT + AA + GG T+A
Sbjct: 16 SAIGGTAAFANH--HKMANPTVGGAAMFPAKTIAENASAAPNLTTLVAAVKAAGLVETLASP--GPFTVFAPTNTAFEKLPEGTVGMLVKPENKATLTKILTYHVVSGKLTASDIIAAIKSGGGSATLTTVA 143
BLAST of mRNA_H-canaliculatus_M_contigs8660.1.1 vs.
Match: Fasciclin (domain-containing protein n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=UPI0019C267C1) HSP 1 Score: 57.4 bits (137), Expect = 4.240e-6 Identity = 31/83 (37.35%), Postives = 46/83 (55.42%), Query Frame = 1
Query: 208 PASDLFSLLSSHPQLSGWADWVKLAGLADLLSDPDAGPFTVFAPVNSALESVPGGVMPVV---NDKKNLAKLVRFHVALGALT 447
P +D + S +LS +K AGL + LS D GP+T+FAPVNSA +P G + + +K L L++ H+ +G LT
Sbjct: 34 PGNDRIQVASRESRLSTLVSAIKAAGLVESLSGKDTGPYTLFAPVNSAFARLPNGALENLLKPENKTALTTLLKKHIVIGRLT 116
BLAST of mRNA_H-canaliculatus_M_contigs8660.1.1 vs.
Match: fasciclin (domain-containing protein n=1 Tax=Pararhizobium haloflavum TaxID=2037914 RepID=UPI000C193422) HSP 1 Score: 55.1 bits (131), Expect = 1.820e-5 Identity = 37/93 (39.78%), Postives = 48/93 (51.61%), Query Frame = 1
Query: 271 VKLAGLADLLSDPDAGPFTVFAPVNSALESVPGGVMPVV---NDKKNLAKLVRFHVALGALTPTAAAAAPGGRLFTPTLANATAEERSALSGD 540
VK AGL + LS AGPFTVFAPVNS ++P G + + +K L K++ HV G L+ GG L +AN E +SGD
Sbjct: 56 VKAAGLVETLSG--AGPFTVFAPVNSGFAALPAGTVETLLMPENKDQLVKVLTAHVVAGDLS--------GGELMRDVMANGGQLELQTVSGD 138
BLAST of mRNA_H-canaliculatus_M_contigs8660.1.1 vs.
Match: Fasciclin (domain-containing protein n=1 Tax=Noviherbaspirillum saxi TaxID=2320863 RepID=A0A3A3FS06_9BURK) HSP 1 Score: 54.3 bits (129), Expect = 2.160e-5 Identity = 34/94 (36.17%), Postives = 50/94 (53.19%), Query Frame = 1
Query: 160 AALNGRIHQISEPLRTPASDLFSLLSSHPQLSGWADWVKLAGLADLLSDPDAGPFTVFAPVNSALESVPGGVMP-VVNDKKNLAKLVRFHVALG 438
AA I + L A+D+ S+ P + K AG+AD L + +GP+TVFAP +SA + +P G M ++ DK LA+L+ HV G
Sbjct: 6 AAFASAIGALLVILPASAADIIETASTTPTFKTFVSAAKAAGVADTLKN--SGPYTVFAPTDSAFDKLPPGTMSELMKDKAKLAELLTHHVVPG 97
BLAST of mRNA_H-canaliculatus_M_contigs8660.1.1 vs.
Match: Fasciclin (n=1 Tax=Thalassococcus sp. S3 TaxID=2017482 RepID=A0A4P6MD65_9RHOB) HSP 1 Score: 54.3 bits (129), Expect = 2.660e-5 Identity = 37/120 (30.83%), Postives = 61/120 (50.83%), Query Frame = 1
Query: 214 SDLFSLLSSHPQLSGWADWVKLAGLADLLSDPDAGPFTVFAPVNSALESVPGGVMPVV---NDKKNLAKLVRFHVALGALTPTAAAAAPGGRLFTPTLANATAEERSALSGDRFASGPRL 564
+D+ + + P S ++ AGL + L P GPFTVFAPVNSA +++P G + + ++ LA ++ +HV GA+T G RL T+ + + + +F SG R+
Sbjct: 29 NDIVDIAAGSPDFSTLVAAIQAAGLEETLRGP--GPFTVFAPVNSAFDALPAGTLESLLLPENRDQLANILTYHVVPGAITSDQIL---GQRLQVATVQGQSVDVNGIVG--KFGSGVRV 141
BLAST of mRNA_H-canaliculatus_M_contigs8660.1.1 vs.
Match: Fasciclin (n=9 Tax=Proteobacteria TaxID=1224 RepID=A0A2K9CBB5_9PSED) HSP 1 Score: 54.7 bits (130), Expect = 3.010e-5 Identity = 37/83 (44.58%), Postives = 48/83 (57.83%), Query Frame = 1
Query: 271 VKLAGLADLLSDPDAGPFTVFAPVNSALESVPGGVMPVV---NDKKNLAKLVRFHVALGALTPTAAAA---APGGRLFTPTLA 501
VK AGL D L GPFTVFAPVNSA ++P G + + +K +L+KL+ +HV G L A AA A GG+ T+A
Sbjct: 68 VKAAGLVDTLKGK--GPFTVFAPVNSAFAALPAGTVDTLLKPENKTSLSKLLTYHVVAGKLDMAALAAKIKAGGGKAELTTVA 148
BLAST of mRNA_H-canaliculatus_M_contigs8660.1.1 vs.
Match: Fasciclin (n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5MB47_HYPSQ) HSP 1 Score: 54.3 bits (129), Expect = 3.920e-5 Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 1
Query: 271 VKLAGLADLLSDPDAGPFTVFAPVNSALESVPGGVMPVV---NDKKNLAKLVRFHVALGALTPT---AAAAAPGGRLFTPTLANAT 510
VK AGL D LS GPFTVFAP+N+A E +P G +P + +K+ L+ ++ +HV G ++ A A A G++ T+A T
Sbjct: 67 VKAAGLVDTLSGK--GPFTVFAPINTAFEKLPEGTVPTLLKPENKEKLSGILTYHVVAGKMSAADLEAKAKANSGKVELKTVAGGT 150
BLAST of mRNA_H-canaliculatus_M_contigs8660.1.1 vs.
Match: Fasciclin (n=5 Tax=Proteobacteria TaxID=1224 RepID=A0A0M2LYI3_9SPHN) HSP 1 Score: 54.3 bits (129), Expect = 4.240e-5 Identity = 42/119 (35.29%), Postives = 61/119 (51.26%), Query Frame = 1
Query: 205 TPASDLFSLLSSHPQLSGWADWVKLAGLADLLSDPDAGPFTVFAPVNSALESVPGGVMPVVNDKKNLAKL---VRFHVALGALTPTAAAA---APGGRLFTPTLANATAEERSALSGDR 543
T + + S+ P LS VK AGL D L+ AGPFTVFAP NSA ++P G + + +N A+L + +HV G +T A A GG+ T+ A +++SGD+
Sbjct: 50 TASKTIVENASALPDLSTLVAAVKAAGLVDTLNG--AGPFTVFAPTNSAFSALPAGTVDTLLKPENKAQLTGVLTYHVVSGKVTAADLARQIRAGGGKAMLTTVQGAPLT--ASMSGDK 164 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8660.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs8660.1.1 >prot_H-canaliculatus_M_contigs8660.1.1 ID=prot_H-canaliculatus_M_contigs8660.1.1|Name=mRNA_H-canaliculatus_M_contigs8660.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=320bp NSIALETLLAGADVHLFNNSENPGNPFYSPAATNGTGLNVNQAEVLSAVGback to top mRNA from alignment at H-canaliculatus_M_contigs8660:2307..4564- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs8660.1.1 ID=mRNA_H-canaliculatus_M_contigs8660.1.1|Name=mRNA_H-canaliculatus_M_contigs8660.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2258bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8660:2307..4564- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8660:2307..4564- >mRNA_H-canaliculatus_M_contigs8660.1.1 ID=mRNA_H-canaliculatus_M_contigs8660.1.1|Name=mRNA_H-canaliculatus_M_contigs8660.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=960bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8660:2307..4564- (Hapterophycus canaliculatus Oshoro7m male)back to top |