mRNA_H-canaliculatus_M_contigs8649.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8649.1.1 vs.
Match: PYlqF, (plastid YlqF/RbgA-like GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Q7_ECTSI) HSP 1 Score: 410 bits (1054), Expect = 1.240e-139 Identity = 207/218 (94.95%), Postives = 213/218 (97.71%), Query Frame = 1
Query: 7 RPLIVVLNRVDTASPAAVAQWKKYLVTQGGLRADNRGGNVPVFFVDSKRGRGVHEIKKAALKAGSRVNERRVRRGINPRSVRVAVIGFPNVGKSALINRLIGKKVAKSMNMPGVTKKMNWVRLGGKDTKPEQNLELLDSPGIIPARQDDQNQALKLAICNDIGQASYDTQVVAAKMIDQLVETAVQFPGYVSLDAVAKRYGLDPRRHSGEEYLYLVAQ 660
RPLIVVLNRVDTASP AV QWKKYLV +GGLRADNRGGNVPVFFVDSKRGRGVHEIKKAALKAGSRVN+RRVRRG+NPRSVRVAVIGFPNVGKSALINRLIGKKVAKSMN PGVTKKMNWVRLGGKDTKPEQNLELLDSPGIIPARQ+DQNQALKLAICNDIGQASYDTQVVAAKMIDQLVETAVQFPGYVSLDAVA RYG+DPRRHSGEEYL+LVAQ
Sbjct: 219 RPLIVVLNRVDTASPTAVEQWKKYLVAEGGLRADNRGGNVPVFFVDSKRGRGVHEIKKAALKAGSRVNDRRVRRGMNPRSVRVAVIGFPNVGKSALINRLIGKKVAKSMNKPGVTKKMNWVRLGGKDTKPEQNLELLDSPGIIPARQEDQNQALKLAICNDIGQASYDTQVVAAKMIDQLVETAVQFPGYVSLDAVATRYGIDPRRHSGEEYLHLVAQ 436
BLAST of mRNA_H-canaliculatus_M_contigs8649.1.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZND5_9STRA) HSP 1 Score: 297 bits (761), Expect = 1.290e-96 Identity = 147/217 (67.74%), Postives = 176/217 (81.11%), Query Frame = 1
Query: 7 RPLIVVLNRVDTASPAAVAQWKKYLVTQGGLRADNRGGNVPVFFVDSKRGRGVHEIKKAALKAGSRVNERRVRRGINPRSVRVAVIGFPNVGKSALINRLIGKKVAKSMNMPGVTKKMNWVRLGGKDTKPEQNLELLDSPGIIPARQDDQNQALKLAICNDIGQASYDTQVVAAKMIDQLVETAVQFPGYVSLDAVAKRYGLDPRRHSGEEYLYLVA 657
RPL+VV+ R D A A+ WK+Y + G+ R NVPVFFVDSKRG+ V +KKA LKAG+ VNE+RV RGINPRSVRVAVIG+PNVGKSALIN+L+GK VAKS N+PGVTKK+NW+RLGG+D + +Q LELLDSPGIIPA+Q+DQ ALKLAICNDIGQASYD Q V+A M+D LVETA+QFPGYV L A+ +RY LDPRR +GEE+L+ VA
Sbjct: 134 RPLVVVMARSDVAPAKAIDDWKRYYTQEKGMAQTGRRSNVPVFFVDSKRGKHVFLVKKAVLKAGAHVNEKRVSRGINPRSVRVAVIGYPNVGKSALINQLVGKAVAKSRNLPGVTKKINWIRLGGQDNRIDQELELLDSPGIIPAKQEDQESALKLAICNDIGQASYDPQRVSAAMVDCLVETAIQFPGYVDLKAITRRYDLDPRRCTGEEFLHAVA 350
BLAST of mRNA_H-canaliculatus_M_contigs8649.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8U7_HETAK) HSP 1 Score: 237 bits (605), Expect = 1.180e-73 Identity = 127/225 (56.44%), Postives = 163/225 (72.44%), Query Frame = 1
Query: 7 RPLIVVLNRVDTASPAAVAQWKKYLVTQGGLRADNRGGNVPVFFVDSKRGRGVHEIKKAALKAGSRVNERRVRRGINPRSVRVAVIGFPNVGKSALINRLIGKKVAKSMNMPGVTKKMNWVRLG-------GKDTKPEQNLELLDSPGIIPARQDDQNQALKLAICNDIGQASYDTQVVAAKMIDQLVETAVQFPGYVSLDAVAKRYGLDPRRHSGEEYLYLVAQ 660
RP IVV+NR D A+ WKK+L+ G G PVFFV+SKRG G+H +K+A LKAG+ VNERRVRRGI PR++R A+IG+PNVGKSALINRLIG+ VA+S N+PGVT+ +NW R+G G+ K + LELLDSPGIIPA+Q DQ+ A++LAICNDIGQASYDTQVV+ MID + ET Q+P ++ + +RYG++ H+GE +LY VAQ
Sbjct: 102 RPHIVVVNREDAIPSGAIDLWKKHLLYTSG----RSGKKKPVFFVNSKRGTGIHTVKRAILKAGAFVNERRVRRGIQPRAIRTAIIGYPNVGKSALINRLIGRAVARSKNIPGVTRTLNWHRIGRHQGQAQGQGAKSSE-LELLDSPGIIPAKQVDQSTAVRLAICNDIGQASYDTQVVSGLMIDIIKETYQQYPEICPVEKLQERYGINIFDHTGEGFLYEVAQ 321
BLAST of mRNA_H-canaliculatus_M_contigs8649.1.1 vs.
Match: G (domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA39_9STRA) HSP 1 Score: 239 bits (609), Expect = 2.810e-73 Identity = 127/223 (56.95%), Postives = 161/223 (72.20%), Query Frame = 1
Query: 4 HRPLIVVLNRVDTASPAAVAQWKKYLVTQGGLRADNRGGN--VPVFFVDSKRGRGVHEIKKAALKAGSRVNERRVRRGINPRSVRVAVIGFPNVGKSALINRLIGKKVAKSMNMPGVTKKMNWVRLGGK---DTKPEQNLELLDSPGIIPARQDDQNQALKLAICNDIGQASYDTQVVAAKMIDQLVETAVQFPGYVSLDAVAKRYGLDPRRHSGEEYLYLVA 657
RPLIV + R D A AA+ +W + V RA +R G VPV FVDS++G +H +K ALKAG+ VNERR R G+ PRS+RVAVIG+PNVGKSA+IN+LIG+++AKS NMPGVTK+++WVRLG ++ E+ LELLDSPGIIPA+Q DQ A KLA+CNDIGQASYD QVVA ++I+ L + PGYV L + +RY LDP SGEEYL+ +A
Sbjct: 146 RRPLIVAMTRKDMAPSAAIKEWSDFYVQSA--RAAHRIGQPRVPVVFVDSRQGTDIHRLKMIALKAGAAVNERRARLGLLPRSIRVAVIGYPNVGKSAIINKLIGRRLAKSKNMPGVTKRISWVRLGAAAMGSSRKEEELELLDSPGIIPAKQVDQATAFKLAVCNDIGQASYDVQVVAGELINMLRRVHARRPGYVDLSRLEQRYQLDPCTLSGEEYLHALA 366
BLAST of mRNA_H-canaliculatus_M_contigs8649.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V344_9STRA) HSP 1 Score: 234 bits (597), Expect = 8.610e-72 Identity = 124/238 (52.10%), Postives = 163/238 (68.49%), Query Frame = 1
Query: 4 HRPLIVVLNRVDTASPAAVAQWKKYLVTQGGLRADNRGGNVPVFFVDSKRGRGVHEIKKAALKAGSRVNERRVRRGINPRSVRVAVIGFPNVGKSALINRLIGKKVAKSMNMPGVTKKMNWVRLGGKDTK-------------------PEQNLELLDSPGIIPARQDDQNQALKLAICNDIGQASYDTQVVAAKMIDQLVETAVQFPGYVSLDAVAKRYGLDPRRHSGEEYLYLVAQ 660
+RPL+V +NR+D + W+++L + G V FFV+SKRG G+HE+K+AALKAG+ VNERR RRGI PR+VR AVIG+PNVGKSALINRL+G+ VAKSMN PGVT+ + WVR+G + ++ PE LELLDSPGIIPA+Q Q+ A +LAICNDIGQASYDTQVVAA+M+D + E + P + ++ KRYG+DP +GEEY+Y +A+
Sbjct: 155 NRPLLVCVNRMDCVGVDTLNVWRRHLNAEAARSEAEGGAKVSYFFVNSKRGGGIHEVKRAALKAGAFVNERRARRGIRPRAVRAAVIGYPNVGKSALINRLVGRAVAKSMNTPGVTRVLTWVRIGRRHSEKVGQASARGGSGGHVQGSLPE--LELLDSPGIIPAKQVSQDCATRLAICNDIGQASYDTQVVAARMVDLITEAHREHPIHAPVNEFQKRYGIDPLPVTGEEYVYELAE 390
BLAST of mRNA_H-canaliculatus_M_contigs8649.1.1 vs.
Match: Ribosome (biogenesis GTPase YlqF n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SIN3_9ARCH) HSP 1 Score: 224 bits (571), Expect = 6.090e-69 Identity = 121/218 (55.50%), Postives = 153/218 (70.18%), Query Frame = 1
Query: 7 RPLIVVLNRVDTASPAAVAQWKKYLVTQGGLRADNRGGNVPVFFVDSKRGRGVHEIKKAALKAGSRVNERRVRRGINPRSVRVAVIGFPNVGKSALINRLIGKKVAKSMNMPGVTKKMNWVRLGGKDTKPEQNLELLDSPGIIPARQDDQNQALKLAICNDIGQASYDTQVVAAKMIDQLVETAVQFPGYVSLDAVAKRYGLDPRRHSGEEYLYLVAQ 660
+PLIV + R+D S AA+ +WKKY TQ + + + ++F++ K G GV +K+ ALKAG VNERR+RRGI PR+VR AVIGFPNVGKSALINRL+GKK+AKS N+PGVT+ + WVR+GG LELLDSPGIIPARQ DQ+ ALKLAICNDIG+ASYD VVAA M DQ+ P YV + + +RY + R +GEE +Y A+
Sbjct: 62 KPLIVAVARLDQVSTAALKEWKKYY-TQYPVHPERP--DAKIYFINGKLGAGVLSLKRQALKAGEAVNERRMRRGIQPRAVRAAVIGFPNVGKSALINRLLGKKMAKSRNLPGVTRALQWVRVGGLQGPQGHVLELLDSPGIIPARQFDQDSALKLAICNDIGEASYDRVVVAAAMCDQVNSLFRHRPSYVHMQHIEERYKIPFRSMTGEEIVYQFAE 276
BLAST of mRNA_H-canaliculatus_M_contigs8649.1.1 vs.
Match: Hypothetical (protein n=3 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RRC8_9STRA) HSP 1 Score: 217 bits (553), Expect = 1.180e-65 Identity = 116/205 (56.59%), Postives = 148/205 (72.20%), Query Frame = 1
Query: 7 RPLIVVLNRVDTASPAAVAQWKKYLVTQGGLRADNRGGNVPVFFVDSKRGRGVHEIKKAALKAGSRVNERRVRRGINPRSVRVAVIGFPNVGKSALINRLIGKKVAKSMNMPGVTKKMNWVRLGGKDTKPEQNLELLDSPGIIPARQDDQNQALKLAICNDIGQASYDTQVVAAKMIDQLVETAVQFPGYVSLDAVAKRYGLDPR 621
+P IVV R D +AVA+W +YL + + D G P+F+VD KRG GV E+K+A L AG VN+RR RGI PR VR AVIGFPNVGKSALIN+L+GKK A S N PGVT+ + W+R+GG +++ +ELLDSPGIIPA+Q DQN ALKLAICNDIG+ASYD++ VAA M++ L T + +VS+D +A RYG+DPR
Sbjct: 111 KPRIVVFARKDMVPGSAVAEWHRYLTS----KPDYNGA--PIFWVDGKRGAGVRELKRAVLSAGEYVNKRRENRGIRPRPVRAAVIGFPNVGKSALINQLVGKKRAVSENRPGVTRSLQWIRIGGDNSQ----IELLDSPGIIPAKQVDQNCALKLAICNDIGEASYDSERVAASMVELLRATHSRRSSFVSVDVLADRYGVDPR 305
BLAST of mRNA_H-canaliculatus_M_contigs8649.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0T146_9STRA) HSP 1 Score: 211 bits (537), Expect = 1.570e-64 Identity = 109/203 (53.69%), Postives = 145/203 (71.43%), Query Frame = 1
Query: 7 RPLIVVLNRVDTASPAAVAQWKKYLVTQGGLRADNRGGNVPVFFVDSKRGRGVHEIKKAALKAGSRVNERRVRRGINPRSVRVAVIGFPNVGKSALINRLIGKKVAKSMNMPGVTKKMNWVRLGGKDTKPEQNLELLDSPGIIPARQDDQNQALKLAICNDIGQASYDTQVVAAKMIDQLVETAVQFPGYVSLDAVAKRYGLD 615
+PLI+ + R D S A+ QWK+Y A + VFF+D+K G+G+ +KK ALKAG VN++RV+RGI PR+VR AVIGFPNVGKSALIN+L+G+++AKS +MPGVT+++ WVRLGG + E +ELLDSPGIIPARQ DQ A+KLAICNDIG+ASYD V+A+ M D + + YV ++ ++KRY LD
Sbjct: 110 KPLIIAVVRYDQISNHALNQWKEYYAMNP---AHTERPDAKVFFIDNKTGQGIISLKKEALKAGILVNQKRVKRGIQPRAVRAAVIGFPNVGKSALINQLLGRRIAKSRDMPGVTRQLMWVRLGGLEGSQENVIELLDSPGIIPARQLDQFNAIKLAICNDIGEASYDRVVIASHMCDYINDLHKNHKKYVDMNIISKRYDLD 309
BLAST of mRNA_H-canaliculatus_M_contigs8649.1.1 vs.
Match: Mitochondrial (GTPase 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVH6_9FLOR) HSP 1 Score: 211 bits (536), Expect = 3.840e-64 Identity = 109/215 (50.70%), Postives = 147/215 (68.37%), Query Frame = 1
Query: 16 IVVLNRVDTASPAAVAQWKKYLVTQGGLRADNRGGNVPVFFVDSKRGRGVHEIKKAALKAGSRVNERRVRRGINPRSVRVAVIGFPNVGKSALINRLIGKKVAKSMNMPGVTKKMNWVRLGGKDTKPEQNLELLDSPGIIPARQDDQNQALKLAICNDIGQASYDTQVVAAKMIDQLVETAVQFPGYVSLDAVAKRYGLDPRRHSGEEYLYLVAQ 660
++ +NR D A AA + W+++L+ QG V F+++K+GRGV E+KK A++A S VNE+R RG+ PR+VR VIG+PNVGKSALINRL+G+K AKS N PGVT+ WVR+ +ELLD PGIIPA+ Q+ AL+LAIC+DIGQA+YDTQ+ AA MID+L A +PGY D + +R+ +DPR SGEE+LY A+
Sbjct: 95 VLAMNRADLAPEAARSDWRRHLLGQG----------EKVRFINAKQGRGVRELKKLAMEASSAVNEKRKARGLLPRAVRCLVIGYPNVGKSALINRLVGRKSAKSANKPGVTRNFQWVRISS-------TIELLDMPGIIPAKFVSQDTALRLAICDDIGQAAYDTQLTAALMIDELKHVASTYPGYFCFDTLVERFRIDPREMSGEEFLYCAAK 292
BLAST of mRNA_H-canaliculatus_M_contigs8649.1.1 vs.
Match: CP-type (G domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJP3_CHOCR) HSP 1 Score: 197 bits (502), Expect = 1.960e-58 Identity = 106/219 (48.40%), Postives = 146/219 (66.67%), Query Frame = 1
Query: 4 HRPLIVVLNRVDTASPAAVAQWKKYLVTQGGLRADNRGGNVPVFFVDSKRGRGVHEIKKAALKAGSRVNERRVRRGINPRSVRVAVIGFPNVGKSALINRLIGKKVAKSMNMPGVTKKMNWVRLGGKDTKPEQNLELLDSPGIIPARQDDQNQALKLAICNDIGQASYDTQVVAAKMIDQLVETAVQFPGYVSLDAVAKRYGLDPRRHSGEEYLYLVAQ 660
+R I+ +NR D A A AQW+K+LV QG V F+++K+GRGV E+KK A+ AGS VNE+R R+G+ PR VR VIG+PNVGKSALINRL+G+K AKS N PGVT+ WVR+ DT +ELLD PGIIPA+ + Q A++LAIC+DIGQA+YD QVVA ++++L ++ GY + + +R+ + SGEE++ L A+
Sbjct: 140 NRTRILAMNRADLAPEVARAQWRKHLVEQG----------EKVRFINAKQGRGVKELKKLAIDAGSFVNEKRTRKGLLPRPVRCLVIGYPNVGKSALINRLVGRKAAKSANKPGVTRNYQWVRIS--DT-----IELLDMPGIIPAKLERQESAVRLAICDDIGQAAYDAQVVAGLLVEELKRVCEEYDGYFEMRTLEERFKVSADGVSGEEFVALAAE 341 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8649.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs8649.1.1 >prot_H-canaliculatus_M_contigs8649.1.1 ID=prot_H-canaliculatus_M_contigs8649.1.1|Name=mRNA_H-canaliculatus_M_contigs8649.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=220bp MHRPLIVVLNRVDTASPAAVAQWKKYLVTQGGLRADNRGGNVPVFFVDSKback to top mRNA from alignment at H-canaliculatus_M_contigs8649:751..2496- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs8649.1.1 ID=mRNA_H-canaliculatus_M_contigs8649.1.1|Name=mRNA_H-canaliculatus_M_contigs8649.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1746bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8649:751..2496- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8649:751..2496- >mRNA_H-canaliculatus_M_contigs8649.1.1 ID=mRNA_H-canaliculatus_M_contigs8649.1.1|Name=mRNA_H-canaliculatus_M_contigs8649.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=660bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8649:751..2496- (Hapterophycus canaliculatus Oshoro7m male)back to top |