mRNA_H-canaliculatus_M_contigs83.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs83.1.1
Unique NamemRNA_H-canaliculatus_M_contigs83.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs83.1.1 vs.
Match: Iron-sulfur (assembly protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK1_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 1.400e-71
Identity = 112/118 (94.92%), Postives = 116/118 (98.31%), Query Frame = 3 
Query:    6 VEEEVAEKIVNIRPKAMDHLQKLRQSQGNEGDIFLRMGVRSGGCSGLSYIMDLVQKEEITEDDMVEEYDGFKCVIDPKSVLYLYGLELDFSDALIGGGFQFQNPNAESSCGCGKSFGV 359
            VE+EV EKIVNIRPKAMDHLQ+LR+SQG EGDIFLRMGVRSGGCSGLSYIMDLV+KEEITEDDMVEEYDGFKCVIDPKSVLYLYGLELDFSDALIGGGFQFQNPNAESSCGCGKSFGV
Sbjct:   58 VEDEVMEKIVNIRPKAMDHLQELRRSQGTEGDIFLRMGVRSGGCSGLSYIMDLVKKEEITEDDMVEEYDGFKCVIDPKSVLYLYGLELDFSDALIGGGFQFQNPNAESSCGCGKSFGV 175
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BLAST of mRNA_H-canaliculatus_M_contigs83.1.1 vs.
Match: Iron-sulfur (assembly protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8B4_9STRA)

HSP 1 Score: 179 bits (455), Expect = 6.040e-52
Identity = 84/114 (73.68%), Postives = 100/114 (87.72%), Query Frame = 3 
Query:   24 EKIVNIRPKAMDHLQKLRQSQGNEGDIFLRMGVRSGGCSGLSYIMDLVQKEEITEDDMVEEYD--GFKCVIDPKSVLYLYGLELDFSDALIGGGFQFQNPNAESSCGCGKSFGV 359
            +KI+ + PKA+ HLQ L++S+  +G + LRMGVRSGGCSGLSY+MDLV +EEI E+DM+EEY   GFKC IDPKS+LYLYGL+LD+SDALIGGGFQFQNPNAESSCGCGKSFGV
Sbjct:   59 DKIITMTPKALTHLQALKKSKEGDGPVVLRMGVRSGGCSGLSYVMDLVTEEEIQEEDMIEEYPEHGFKCAIDPKSMLYLYGLQLDYSDALIGGGFQFQNPNAESSCGCGKSFGV 172
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BLAST of mRNA_H-canaliculatus_M_contigs83.1.1 vs.
Match: Fe-S_biosyn (domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FB81_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.670e-41
Identity = 71/112 (63.39%), Postives = 90/112 (80.36%), Query Frame = 3 
Query:   30 IVNIRPKAMDHLQKLRQSQGNEGDIFLRMGVRSGGCSGLSYIMDLVQKEEITEDDMVEEYDG--FKCVIDPKSVLYLYGLELDFSDALIGGGFQFQNPNAESSCGCGKSFGV 359
            ++NI+PKAM  L++LR+ Q  +  + LRMGVR+GGCSGLSYIMD   ++++ EDD ++EY G   KCV+D KS+LYLYGLELDFS+ LIGGGF+F NPNAE SCGCG SFGV
Sbjct:   41 VINIKPKAMKRLRELREKQKTDS-LVLRMGVRNGGCSGLSYIMDFATEDDVQEDDAIDEYPGEKLKCVVDAKSMLYLYGLELDFSEELIGGGFKFFNPNAEDSCGCGSSFGV 151
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BLAST of mRNA_H-canaliculatus_M_contigs83.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J400_9EUKA)

HSP 1 Score: 152 bits (384), Expect = 1.710e-41
Identity = 71/111 (63.96%), Postives = 91/111 (81.98%), Query Frame = 3 
Query:   30 IVNIRPKAMDHLQKLRQSQGNEGDIFLRMGVRSGGCSGLSYIMDLVQKEEITEDDMVEEY-DGFKCVIDPKSVLYLYGLELDFSDALIGGGFQFQNPNAESSCGCGKSFGV 359
            I++    AM  L  LR+ QG+  D+ LR+GVRSGGCSG+SY+MD +Q +EI++DD V EY +G +CV+DPKS+++LYGL LD+SDALIGGGF FQNPNAES+CGCGKSFGV
Sbjct:   54 IISFSDGAMTQLISLREKQGS-ADLHLRVGVRSGGCSGMSYVMDFMQSDEISDDDTVVEYGEGIRCVVDPKSLMFLYGLRLDYSDALIGGGFSFQNPNAESTCGCGKSFGV 163
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BLAST of mRNA_H-canaliculatus_M_contigs83.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YY07_TRICV)

HSP 1 Score: 152 bits (383), Expect = 2.890e-41
Identity = 75/119 (63.03%), Postives = 92/119 (77.31%), Query Frame = 3 
Query:   12 EEVAEKIVNIRPKAMDHLQKLRQSQGNEGD-IFLRMGVRSGGCSGLSYIMDLVQKEEITEDDMVEEY--DGFKCVIDPKSVLYLYGLELDFSDALIGGGFQFQNPNAESSCGCGKSFGV 359
            EE  + +++I+P AM  L++L+  Q N  + + LRMGVR+GGCSGLSY MD   + EI EDDMV+EY  DG KCV+D KS+LYLYGLELD+SD LIGGGF+F NPNAE SCGCG SFGV
Sbjct:   51 EEPEDAVIHIKPPAMIRLRELKSKQPNPSETLVLRMGVRNGGCSGLSYAMDFSTEAEIEEDDMVDEYPKDGIKCVVDAKSMLYLYGLELDYSDELIGGGFKFFNPNAEESCGCGSSFGV 169
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BLAST of mRNA_H-canaliculatus_M_contigs83.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WFB3_9STRA)

HSP 1 Score: 151 bits (382), Expect = 4.330e-41
Identity = 73/119 (61.34%), Postives = 93/119 (78.15%), Query Frame = 3 
Query:   12 EEVAEKIVNIRPKAMDHLQKLRQSQGNEGD-IFLRMGVRSGGCSGLSYIMDLVQKEEITEDDMVEEY--DGFKCVIDPKSVLYLYGLELDFSDALIGGGFQFQNPNAESSCGCGKSFGV 359
            EE  + +++I+P AM  L++LR+ Q +    + LRMGVR+GGCSGLSY MD   ++EI EDD+V+EY  +G KCV+D KS+LYLYGLELD+SD LIGGGF+F NPNAE SCGCG SFGV
Sbjct:   53 EEPEDAVIHIKPPAMSRLRELREKQADPSSALILRMGVRNGGCSGLSYAMDFSTEDEIQEDDVVDEYPSEGIKCVVDAKSMLYLYGLELDYSDELIGGGFKFFNPNAEESCGCGSSFGV 171
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BLAST of mRNA_H-canaliculatus_M_contigs83.1.1 vs.
Match: Fe-S_biosyn (domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D487_9STRA)

HSP 1 Score: 149 bits (376), Expect = 5.730e-40
Identity = 69/117 (58.97%), Postives = 90/117 (76.92%), Query Frame = 3 
Query:   15 EVAEKIVNIRPKAMDHLQKLRQSQGNEGDIFLRMGVRSGGCSGLSYIMDLVQKEEITEDDMVEEYDG--FKCVIDPKSVLYLYGLELDFSDALIGGGFQFQNPNAESSCGCGKSFGV 359
            +V E+++ +   A+ HL+ LR  QG E  ++LRMGVRSGGCSG+SY++D+++ EE+TE+D VE Y    F CV+DPKS+LYL+GL LDF D LIGGGF F NPNA+ SCGCG SFGV
Sbjct:   74 DVTERVITVSDSALKHLEDLRAKQGVE-HLYLRMGVRSGGCSGMSYVLDVMKPEEVTEEDHVESYSEHHFSCVVDPKSLLYLFGLRLDFKDQLIGGGFAFLNPNAQESCGCGSSFGV 189
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BLAST of mRNA_H-canaliculatus_M_contigs83.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P3T9_HETAK)

HSP 1 Score: 149 bits (376), Expect = 5.730e-40
Identity = 67/114 (58.77%), Postives = 90/114 (78.95%), Query Frame = 3 
Query:   27 KIVNIRPKAMDHLQKLRQSQGN-EGDIFLRMGVRSGGCSGLSYIMDLVQKEEITEDDMVE--EYDGFKCVIDPKSVLYLYGLELDFSDALIGGGFQFQNPNAESSCGCGKSFGV 359
            ++V +   A+ HL +L++ QG  +  + LRMGV+SGGCSG+SY+MD ++ E++ +DD +E  E  G KC IDPKS+LYLYGLELD+SD LIGGGF+F+NPNAE +CGCGKSFGV
Sbjct:   76 RVVTLSANALKHLAELKEKQGKADAQLHLRMGVKSGGCSGMSYVMDFMEAEDVADDDHIELWEEQGLKCAIDPKSLLYLYGLELDYSDELIGGGFEFRNPNAEQTCGCGKSFGV 189
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BLAST of mRNA_H-canaliculatus_M_contigs83.1.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SMF6_9STRA)

HSP 1 Score: 149 bits (376), Expect = 6.650e-40
Identity = 71/113 (62.83%), Postives = 90/113 (79.65%), Query Frame = 3 
Query:   30 IVNIRPKAMDHLQKLRQSQGN-EGDIFLRMGVRSGGCSGLSYIMDLVQKEEITEDDMVEEY--DGFKCVIDPKSVLYLYGLELDFSDALIGGGFQFQNPNAESSCGCGKSFGV 359
            ++ I+P AM+ L++L+  Q + +  + LRMGVR+GGCSGLSY+MD   ++EI EDD V+EY  DG KCV+D KS+LYLYGLELD+SD LIGGGF+F NPNAE SCGCG SFGV
Sbjct:   82 VIQIKPPAMERLRELKAKQADPKTALVLRMGVRNGGCSGLSYVMDFSTEDEIQEDDAVDEYQKDGIKCVVDAKSMLYLYGLELDYSDELIGGGFKFFNPNAEESCGCGSSFGV 194
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BLAST of mRNA_H-canaliculatus_M_contigs83.1.1 vs.
Match: Iron-sulfur (cluster assembly accessory protein n=25 Tax=Moorena TaxID=1155738 RepID=A0A6P0NFR2_9CYAN)

HSP 1 Score: 145 bits (366), Expect = 2.000e-39
Identity = 68/115 (59.13%), Postives = 87/115 (75.65%), Query Frame = 3 
Query:   15 EVAEKIVNIRPKAMDHLQKLRQSQGNEGDIFLRMGVRSGGCSGLSYIMDLVQKEEITEDDMVEEYDGFKCVIDPKSVLYLYGLELDFSDALIGGGFQFQNPNAESSCGCGKSFGV 359
            E  +K + +  KA+ H+  L+QSQG   D++LR+GVR GGCSG+SY+MD  +   I E+D + +YDGFK + DPKS+LYLYGL LD+SDA+IGGGFQF NPNA  SCGCGKSF V
Sbjct:    6 ESQQKGIQLTDKALKHVLALQQSQGK--DLYLRVGVRQGGCSGMSYMMDFEEPSNIRENDEIFDYDGFKIICDPKSLLYLYGLVLDYSDAMIGGGFQFTNPNANQSCGCGKSFSV 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs83.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Iron-sulfur1.400e-7194.92assembly protein n=1 Tax=Ectocarpus siliculosus Ta... [more]
Iron-sulfur6.040e-5273.68assembly protein n=1 Tax=Tribonema minus TaxID=303... [more]
Fe-S_biosyn1.670e-4163.39domain-containing protein n=1 Tax=Fragilariopsis c... [more]
Hypothetical1.710e-4163.96protein n=2 Tax=Calcidiscus leptoporus TaxID=12754... [more]
Hypothetical2.890e-4163.03protein n=1 Tax=Trieres chinensis TaxID=1514140 Re... [more]
Hypothetical4.330e-4161.34protein n=1 Tax=Pseudictyota dubia TaxID=2749911 R... [more]
Fe-S_biosyn5.730e-4058.97domain-containing protein n=3 Tax=Monodopsidaceae ... [more]
Hypothetical5.730e-4058.77protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical6.650e-4062.83protein n=2 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Iron-sulfur2.000e-3959.13cluster assembly accessory protein n=25 Tax=Mooren... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs83contigH-canaliculatus_M_contigs83:677..2133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJK1
PFAMsFe-S_biosyn
Model size1116
Max annot lvl2759|Eukaryota
KEGG koko:K22063
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005198,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0010467,GO:0016043,GO:0016226,GO:0016530,GO:0019538,GO:0022607,GO:0031163,GO:0031974,GO:0034986,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0048037,GO:0051186,GO:0051536,GO:0051537,GO:0051540,GO:0051604,GO:0070013,GO:0071704,GO:0071840,GO:0097428,GO:0140104,GO:1901564
Exons2
Evalue1.49e-66
EggNOG OGsCOG0316@1|root,KOG1120@2759|Eukaryota
Ec32 ortholog descriptioniron-sulfur assembly protein
Ec32 orthologEc-04_006410.1
Descriptionprotein maturation by iron-sulfur cluster transfer
Cds size309
COG categoryC
BRITEko00000,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854145.5813582-UTR-H-canaliculatus_M_contigs83:676..7291696854145.5813582-UTR-H-canaliculatus_M_contigs83:676..729Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs83 677..729 +
1696854145.619009-UTR-H-canaliculatus_M_contigs83:1379..21331696854145.619009-UTR-H-canaliculatus_M_contigs83:1379..2133Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs83 1380..2133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854145.5955527-CDS-H-canaliculatus_M_contigs83:729..8491696854145.5955527-CDS-H-canaliculatus_M_contigs83:729..849Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs83 730..849 +
1696854145.6073716-CDS-H-canaliculatus_M_contigs83:1190..13791696854145.6073716-CDS-H-canaliculatus_M_contigs83:1190..1379Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs83 1191..1379 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs83.1.1prot_H-canaliculatus_M_contigs83.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs83 730..1379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs83.1.1

>prot_H-canaliculatus_M_contigs83.1.1 ID=prot_H-canaliculatus_M_contigs83.1.1|Name=mRNA_H-canaliculatus_M_contigs83.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=103bp
MDHLQKLRQSQGNEGDIFLRMGVRSGGCSGLSYIMDLVQKEEITEDDMVE
EYDGFKCVIDPKSVLYLYGLELDFSDALIGGGFQFQNPNAESSCGCGKSF
GV*
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mRNA from alignment at H-canaliculatus_M_contigs83:677..2133+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs83.1.1 ID=mRNA_H-canaliculatus_M_contigs83.1.1|Name=mRNA_H-canaliculatus_M_contigs83.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1457bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs83:677..2133+ (Hapterophycus canaliculatus Oshoro7m male)
CAGAGGTTGAAGAAGAAGTTGCAGAAAAGATCGTGAACATCCGCCCTAAG
GCAATGGACCATCTTCAGAAGCTTCGACAAAGCCAAGGGAACGAGGGTGA
CATATTTTTGCGGATGGGGGTGCGGTCCGGAGGGTGCTCCGGCTTATCCT
ATATCATGGACTTGGTCCAAAAGGTGAGACCAGGCCCACGCTGAATGTGT
TTCCTCGCGTGTTTCACGTCGCTTCGTCGCTTCACTCACTGCTCAACGGT
GAGCCTGGCTTCAACTTGTACCGTTGACCGGTCCTGAATCGTTGCAGTTA
TTTTGGTACTACTCGGTGTTGGTGTGTATATCCACATTTTGCCGTCCATG
ATTGCGTTTGAATTTGTTTTGGGATCTCGAACTTCTGAATTGAAGTGAAG
GCGGGCCTTTCCTGCAGAAGATATGCTTTAATCACGAAGTCGAATTGCGT
AAGGAGATAGATTTTCGTATCCGCTTGTTTGCAATGGGACCGCTCGTCGT
GTTCACTGCCGCAGGAGGAAATCACAGAGGATGACATGGTGGAGGAGTAC
GATGGCTTCAAGTGCGTAATTGATCCGAAAAGTGTCCTCTACTTGTACGG
CCTGGAACTGGACTTCAGCGACGCCCTCATCGGGGGCGGCTTTCAATTCC
AAAATCCGAACGCCGAGAGCTCTTGTGGCTGTGGAAAATCCTTCGGTGTA
TAGATGGGGGTGTTCACCCTTTAACATCGGGTTGTGAAAGTCAGCAGCCG
TGGGTTTTGGCTGATCATCTCACAGAAATTGCTCTGGGCTGTCGCTTCCA
ACTTTCTCTCTTGAATGGAAAGCTAGATCTGGCGTAGGCCACAGCATCCC
AAAGCGATTATATCGGGCGATTGTTATCCGAGGCACGGTGTTGATGAGGC
AAATGTAAACTACTGGTTGAAGCGTTGAAGACGTATATGGTGGAAAACAA
GTCGGAAAATAAAAAGGGATAATGGGAAGAATTCTCAACCCCATCCACTG
AGCTTGAATACCGGTTAGTTGAATACCGGGGTCGATCCGGAACCTCTAAT
CTAGCCCGACTGACGGGAGGTTGGATCGTTGAAACGGCGTTCTTGTAGGC
TGGCGAGACTCTGTCTGAAGGCAGCGCTGTAACCCGGGTGTTCGCCCGGC
AAGCTCTGATTAGAGGTAATCCATTTCTTCGAGGCTACAAGGAGCTTGTT
CTCGATCGCATTTTACATGTACGGTTCTCGGGTTACGGCACTTGCTGACG
CGATTCACGCGGTGCGGCCGCACGCCGCAAGACGTTTGCTCCGTTTGTTA
TTGCAAAGTTCAACGTTCTCGCCATGGCTGTCAATCGTTACGAAGGGTTT
GTTGTGCGTCGCCCGGTGGCTTCGGACCTGGCACCACGGCTTATTCCACA
CTCTGTACCTCGACACTGAAGAGTAGTGTCGGCATAACGAAGATTTTCGG
AAACTTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs83:677..2133+

>mRNA_H-canaliculatus_M_contigs83.1.1 ID=mRNA_H-canaliculatus_M_contigs83.1.1|Name=mRNA_H-canaliculatus_M_contigs83.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=309bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs83:677..2133+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGACCATCTTCAGAAGCTTCGACAAAGCCAAGGGAACGAGGGTGACAT
ATTTTTGCGGATGGGGGTGCGGTCCGGAGGGTGCTCCGGCTTATCCTATA
TCATGGACTTGGTCCAAAAGGAGGAAATCACAGAGGATGACATGGTGGAG
GAGTACGATGGCTTCAAGTGCGTAATTGATCCGAAAAGTGTCCTCTACTT
GTACGGCCTGGAACTGGACTTCAGCGACGCCCTCATCGGGGGCGGCTTTC
AATTCCAAAATCCGAACGCCGAGAGCTCTTGTGGCTGTGGAAAATCCTTC
GGTGTATAG
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