mRNA_H-canaliculatus_M_contigs828.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs828.1.1
Unique NamemRNA_H-canaliculatus_M_contigs828.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs828.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL5_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 1.730e-38
Identity = 128/160 (80.00%), Postives = 131/160 (81.88%), Query Frame = 1
Query:  121 YNRRPGDWECPSCGNNCFASRVECNRCQTPKPEGXXXXXXXXXXXXXXYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNRRPGDWDCPGCGNHCFASRTECNRCGTLKPEGAGGGFDRXXXXXFQXXXXXXXXXXXXXXXXXXXXXXXXYNKRPGDW 600
            YNRRPGDWECPSCGNNCFASRVECNRCQTPKP G          XXXX   XXXXXXXXXXXXX   XXXXXXXXXXXXXYNRRPGDWDCP CGNHCFASR  CNRC T +PEGAGGGF+R XXXX  XXXXXXXXXXXXXXXXXXXX    Y+KRPGDW
Sbjct:   49 YNRRPGDWECPSCGNNCFASRVECNRCQTPKPAGAGGGGYGERGXXXXXX-XXXXXXXXXXXXXGYSXXXXXXXXXXXXXYNRRPGDWDCPSCGNHCFASRVVCNRCPTPRPEGAGGGFERGXXXXXXXXXXXXXXXXXXXXXXXXXX----YSKRPGDW 203          
BLAST of mRNA_H-canaliculatus_M_contigs828.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ0_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 4.600e-26
Identity = 83/116 (71.55%), Postives = 85/116 (73.28%), Query Frame = 1
Query:  124 NRRPGDWECPSCGNNCFASRVECNRCQTPKPEGXXXXXXXXXXXXXXYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNRRPGDWDCPGCGNHCFASRTECNRCGTLKPEGAGG 471
            N+RPGDWECPSCGNNCFASR ECNRCQTPKP G   XXXX XXXXXXY            XXXXXX XXXXXXXXXXXX   R GDW CP CGN+CFA R ECNRC T KP G GG
Sbjct:   47 NKRPGDWECPSCGNNCFASRSECNRCQTPKPAGAGGXXXXYXXXXXXYX-----------XXXXXXYXXXXXXXXXXXXXXXREGDWTCPSCGNNCFAFRQECNRCQTPKPGGEGG 151          
BLAST of mRNA_H-canaliculatus_M_contigs828.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NK80_9CHLO)

HSP 1 Score: 96.3 bits (238), Expect = 1.330e-19
Identity = 73/113 (64.60%), Postives = 76/113 (67.26%), Query Frame = 1
Query:  130 RPGDWECPSCGNNCFASRVECNRCQTPKPEGXXXXXXXXXXXXXXYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNRRPGDWDCPGCGNHCFASRTECNRCGTLKPEGAG 468
            RPGDW CPSCGNNC+A R  CNRC TPKP+G      XXXXX               XXXXXXXXXXXXXXXXXXXX   RPGDW CPGCGN+CF  R  CNRCG  KP GAG
Sbjct:  147 RPGDWPCPSCGNNCYAFRNACNRCGTPKPDGGGGAAGXXXXXGYGXX----------XXXXXXXXXXXXXXXXXXXXXXXRPGDWPCPGCGNNCFGWREACNRCGAPKPPGAG 249          
BLAST of mRNA_H-canaliculatus_M_contigs828.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8L8_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 6.440e-19
Identity = 79/111 (71.17%), Postives = 80/111 (72.07%), Query Frame = 1
Query:  130 RPGDWECPSCGNNCFASRVECNRCQTPKPEGXXXXXXXXXXXXXXYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNRRPGDWDCPGCGNHCFASRTECNRCGTLKPEG 462
            R GDW CPSCGNNCFA R ECNRCQTPKP G  XXXXXXXXXXXX             XXXXXXXXXXXXXXXXXXX   R GDW CP CGN+CFA R ECNRC T KP G
Sbjct:   75 REGDWACPSCGNNCFAFRQECNRCQTPKPGGDGXXXXXXXXXXXXXX-----------XXXXXXXXXXXXXXXXXXXXXXRDGDWACPSCGNNCFAFRNECNRCQTPKPSG 174          
BLAST of mRNA_H-canaliculatus_M_contigs828.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STL9_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.850e-16
Identity = 66/116 (56.90%), Postives = 75/116 (64.66%), Query Frame = 1
Query:  124 NRRPGDWECPSCGNNCFASRVECNRCQTPKPEGXXXXXXXXXXXXXXYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNRRPGDWDCPGCGNHCFASRTECNRCGTLKPEGAGG 471
            +RR GDW+CPSCG   FAS+  C +CQTP+P+G     XXXXXXXXX                   XXXXXXXXXXXXX +RR GDWDCP CG HCFASR+ C +CGT  P G GG
Sbjct:   37 DRRAGDWDCPSCGALVFASKSNCYKCQTPRPDGGGGYGXXXXXXXXXXX-----------------XXXXXXXXXXXXXXDRRAGDWDCPSCGAHCFASRSTCFKCGTPNP-GPGG 134          
BLAST of mRNA_H-canaliculatus_M_contigs828.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUK3_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.870e-16
Identity = 70/116 (60.34%), Postives = 79/116 (68.10%), Query Frame = 1
Query:  124 NRRPGDWECPSCGNNCFASRVECNRCQTPKPEGXXXXXXXXXXXXXXYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNRRPGDWDCPGCGNHCFASRTECNRCGTLKPEGAGG 471
            NRRPGDW+C  CG   FASR  C +C  P+ +G                G XXXXXXXXXXXXXXXXXXXXXXXXXXXX  RRPGDWDCP CG H FAS++ C +CGT +P+G GG
Sbjct:   27 NRRPGDWDCTKCGAMNFASRNSCFKCHEPRADG----------------GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPGDWDCPSCGAHVFASKSNCFKCGTPRPDGGGG 126          
BLAST of mRNA_H-canaliculatus_M_contigs828.1.1 vs.
Match: RNA-binding (cabeza n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XE95_9CHLO)

HSP 1 Score: 86.3 bits (212), Expect = 2.780e-16
Identity = 70/113 (61.95%), Postives = 74/113 (65.49%), Query Frame = 1
Query:  130 RPGDWECPSCGNNCFASRVECNRCQTPKPEGXXXXXXXXXXXXXXYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNRRPGDWDCPGCGNHCFASRTECNRCGTLKPEGAG 468
            RPGDW CP C NNCFAS+  C +C  PKP                 AGXXXXXXXXXXXXXXXXXXXXXXXXXX      RPGDW CP C N CFAS+ +CNRC T KP GAG
Sbjct:  180 RPGDWPCPGCNNNCFASKSACPKCGAPKPAD---------------AGXXXXXXXXXXXXXXXXXXXXXXXXXXPRPKEARPGDWPCPNCNNICFASKDKCNRCDTPKPPGAG 277          
BLAST of mRNA_H-canaliculatus_M_contigs828.1.1 vs.
Match: Ewing (sarcoma breakpoint region 1b n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH5_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.540e-15
Identity = 74/88 (84.09%), Postives = 75/88 (85.23%), Query Frame = 1
Query:  121 YNRRPGDWECPSCGNNCFASRVECNRCQTPKPEGXXXXXXXXXXXXXXYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNRRPGDW 384
            YNRRPGDWECP+CGNNCFASRVECNRCQTPKP G   XX   XXXXXX  G  XXXXXXXXXXXXXXXXXXXXXXXXX  YNRRPGDW
Sbjct:   49 YNRRPGDWECPNCGNNCFASRVECNRCQTPKPVGAGGXXYGEXXXXXXXQGGGXXXXXXXXXXXXXXXXXXXXXXXXXG-YNRRPGDW 135          
BLAST of mRNA_H-canaliculatus_M_contigs828.1.1 vs.
Match: RNA-binding (Zn-finger-containing protein n=2 Tax=environmental samples TaxID=68359 RepID=A0A075GQT5_9EURY)

HSP 1 Score: 79.3 bits (194), Expect = 3.490e-14
Identity = 44/118 (37.29%), Postives = 51/118 (43.22%), Query Frame = 1
Query:  124 NRRPGDWECPSCGNNCFASRVECNR--CQTPKPEGXXXXXXXXXXXXXXYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNRRPGDWDCPGCGNHCFASRTECNRCGTLKP-EGAG 468
            N +PGDW CP C N+ +A++  CNR  C+ PKP G                G                              N +PGDW CP C NH FASRTECNRC   KP EG G
Sbjct:  181 NMKPGDWRCPKCKNHNYANKKVCNRTGCEEPKPRGGSGSRNSRGHRSSNSGGFRDS--------------------------NMKPGDWTCPSCSNHNFASRTECNRCDARKPVEGKG 272          
BLAST of mRNA_H-canaliculatus_M_contigs828.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D5J3_EMIHU)

HSP 1 Score: 77.0 bits (188), Expect = 1.030e-13
Identity = 53/111 (47.75%), Postives = 58/111 (52.25%), Query Frame = 1
Query:  130 RPGDWECPSCGNNCFASRVECNRCQTPKPEGXXXXXXXXXXXXXXYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNRRPGDWDCPGCGNHCFASRTECNRCGTLKPEG 462
            RPGDW CPSC  N FAS++ C RCQTPKP G   XXXXXXXXXXX                                 N RPGDW CP C ++ FAS+T C RC T KP G
Sbjct:   40 RPGDWTCPSCNANVFASKMACFRCQTPKPGGEGGXXXXXXXXXXXXXXT-----------------------------NVRPGDWTCPQCNSNVFASKTNCYRCDTPKPGG 121          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs828.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.730e-3880.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.600e-2671.55protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.330e-1964.60protein n=1 Tax=Raphidocelis subcapitata TaxID=307... [more]
Uncharacterized6.440e-1971.17protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical1.850e-1656.90protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical1.870e-1660.34protein (Fragment) n=1 Tax=Rhizochromulina marina ... [more]
RNA-binding2.780e-1661.95cabeza n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 Re... [more]
Ewing1.540e-1584.09sarcoma breakpoint region 1b n=1 Tax=Ectocarpus si... [more]
RNA-binding3.490e-1437.29Zn-finger-containing protein n=2 Tax=environmental... [more]
Uncharacterized1.030e-1347.75protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs828contigH-canaliculatus_M_contigs828:577..1550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LIQ0
PFAMsRRM_1,zf-RanBP
Model size603
Max annot lvl2759|Eukaryota
KEGG koko:K13098,ko:K14651,ko:K18270
KEGG Pathwayko03022,ko05202,map03022,map05202
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons2
Evalue7.54e-27
EggNOG OGsKOG1995@1|root,KOG1995@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, RanBP2-type
Ec32 orthologEc-25_002370.1
DescriptionRNA binding
Cds size603
COG categoryJ
BRITEko00000,ko00001,ko03019,ko03021,ko03041,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854144.0649183-CDS-H-canaliculatus_M_contigs828:576..7961696854144.0649183-CDS-H-canaliculatus_M_contigs828:576..796Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs828 577..796 -
1696854144.080696-CDS-H-canaliculatus_M_contigs828:1167..15501696854144.080696-CDS-H-canaliculatus_M_contigs828:1167..1550Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs828 1168..1550 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs828.1.1prot_H-canaliculatus_M_contigs828.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs828 577..1550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs828.1.1

>prot_H-canaliculatus_M_contigs828.1.1 ID=prot_H-canaliculatus_M_contigs828.1.1|Name=mRNA_H-canaliculatus_M_contigs828.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=201bp
MSYYNDGGGQGGGFDQQGGGGSWSRGGGGGGGGGRGGGGGYNRRPGDWEC
PSCGNNCFASRVECNRCQTPKPEGAGGGGYGDRGGGGGYAGGGGYQGGGG
GYGGGGGGGGGFGGGGGGGGYNRRPGDWDCPGCGNHCFASRTECNRCGTL
KPEGAGGGFDRGGGGGFQGGGGFQGGGGGGYGGGGGGGGGGGYNKRPGDW
*
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mRNA from alignment at H-canaliculatus_M_contigs828:577..1550-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs828.1.1 ID=mRNA_H-canaliculatus_M_contigs828.1.1|Name=mRNA_H-canaliculatus_M_contigs828.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=974bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs828:577..1550- (Hapterophycus canaliculatus Oshoro7m male)
ATGAGCTACTACAACGACGGAGGTGGCCAAGGTGGCGGCTTTGACCAACA AGGCGGTGGCGGCAGCTGGAGCCGCGGCGGCGGCGGCGGCGGCGGTGGCG GTCGCGGAGGCGGCGGTGGCTACAACCGCAGGCCTGGAGACTGGGAGTGT CCCTCGTGCGGCAACAACTGCTTCGCATCCCGCGTAGAGTGCAACCGCTG CCAAACCCCCAAACCCGAAGGCGCCGGGGGTGGTGGTTACGGTGACCGCG GTGGCGGGGGAGGATACGCCGGCGGCGGAGGCTACCAGGGCGGAGGCGGC GGCTACGGTGGAGGCGGCGGCGGCGGCGGCGGCTTCGGTGGAGGCGGCGG TGGGGGCGGCTACAACCGCAGGCCTGGAGACTGGTGAGATTGTCAAACAT GTAACGCCGATCGCACGGTTCATACGCCCCCCCCCAGGAGAACGGGGCTC TGTCTCACAGAAGATCACACAAGCTTCGCGGAGCGCTTGGCCTTTCCCAC GCCTCCACTGGACGCCCGCTCTGGTTTTATTTCATGTAGGATGCTCTCCA GGATTCTCGAGAGATGACGGAAAGCGCGCGCGACCACCGCCGGAATTCAG AGGAGACGCATGCGCTCGCTCTTTGGGTGTGACGCGCTCTCTTTCCTCGC CCTTCTTTTCTCGCGTGCATTTGCGTTTCTTACGGCCCACTTTGCCCTCC CTTCGAACCTCCCGTCCTCATGCCACCTACCGCTCGGTTGATCCTCTCGC CCAGGGACTGCCCCGGCTGCGGCAACCACTGCTTCGCCTCTCGCACAGAG TGCAACCGTTGCGGGACGCTGAAGCCTGAGGGCGCCGGAGGGGGATTCGA CCGTGGAGGAGGAGGCGGCTTCCAGGGTGGCGGCGGCTTCCAGGGTGGCG GCGGCGGCGGGTACGGCGGCGGTGGCGGCGGTGGCGGCGGCGGGGGCTAC AACAAGCGCCCCGGGGACTGGTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs828:577..1550-

>mRNA_H-canaliculatus_M_contigs828.1.1 ID=mRNA_H-canaliculatus_M_contigs828.1.1|Name=mRNA_H-canaliculatus_M_contigs828.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=603bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs828:577..1550- (Hapterophycus canaliculatus Oshoro7m male)
ATGAGCTACTACAACGACGGAGGTGGCCAAGGTGGCGGCTTTGACCAACA
AGGCGGTGGCGGCAGCTGGAGCCGCGGCGGCGGCGGCGGCGGCGGTGGCG
GTCGCGGAGGCGGCGGTGGCTACAACCGCAGGCCTGGAGACTGGGAGTGT
CCCTCGTGCGGCAACAACTGCTTCGCATCCCGCGTAGAGTGCAACCGCTG
CCAAACCCCCAAACCCGAAGGCGCCGGGGGTGGTGGTTACGGTGACCGCG
GTGGCGGGGGAGGATACGCCGGCGGCGGAGGCTACCAGGGCGGAGGCGGC
GGCTACGGTGGAGGCGGCGGCGGCGGCGGCGGCTTCGGTGGAGGCGGCGG
TGGGGGCGGCTACAACCGCAGGCCTGGAGACTGGGACTGCCCCGGCTGCG
GCAACCACTGCTTCGCCTCTCGCACAGAGTGCAACCGTTGCGGGACGCTG
AAGCCTGAGGGCGCCGGAGGGGGATTCGACCGTGGAGGAGGAGGCGGCTT
CCAGGGTGGCGGCGGCTTCCAGGGTGGCGGCGGCGGCGGGTACGGCGGCG
GTGGCGGCGGTGGCGGCGGCGGGGGCTACAACAAGCGCCCCGGGGACTGG
TAA
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